+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Poecilia latipinna (sailfin molly)
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D 106936143 fbl; rRNA 2'-O-methyltransferase fibrillarin K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
D 106939063 uncharacterized protein LOC106939063 K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
D 106949150 nop56; nucleolar protein 56 K14564 NOP56; nucleolar protein 56
D 106952541 nop58; nucleolar protein 58 K14565 NOP58; nucleolar protein 58
D 106961746 snu13; NHP2-like protein 1 K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13
C Box H/ACA snoRNPs
D 106950000 dkc1; H/ACA ribonucleoprotein complex subunit 4 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D 106961689 gar1; H/ACA ribonucleoprotein complex subunit 1 K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1
D 106934715 nhp2; H/ACA ribonucleoprotein complex subunit 2 K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2
D 106945503 nop10; H/ACA ribonucleoprotein complex subunit 3 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D 106939652 naf1; H/ACA ribonucleoprotein complex non-core subunit NAF1 K14763 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1
D 106940103 shq1; protein SHQ1 homolog isoform X1 K14764 SHQ1; protein SHQ1
B 90S particles
C U3 small nucleolar RNA-associated proteins
D 106956393 imp3; U3 small nucleolar ribonucleoprotein protein IMP3 K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3
D 106956168 imp4; U3 small nucleolar ribonucleoprotein protein IMP4 K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
D 106957880 mphosph10; U3 small nucleolar ribonucleoprotein protein MPP10 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10
D 106963434 ngdn; neuroguidin K14765 NGDN; U3 small nucleolar ribonucleoprotein protein LCP5
D 106943619 ribosomal RNA-processing protein 7 homolog A-like K14545 RRP7; ribosomal RNA-processing protein 7
D 106961084 ribosomal RNA-processing protein 7 homolog A-like K14545 RRP7; ribosomal RNA-processing protein 7
D 106962507 periodic tryptophan protein 2 homolog K14558 PWP2; periodic tryptophan protein 2
D 106965223 nop14; nucleolar protein 14 K14766 NOP14; nucleolar protein 14
D 106945818 utp3; something about silencing protein 10 isoform X1 K14767 UTP3; U3 small nucleolar RNA-associated protein 3
D 106937674 utp4; cirhin K14548 UTP4; U3 small nucleolar RNA-associated protein 4
D 106957210 wdr43; WD repeat-containing protein 43 K14546 UTP5; U3 small nucleolar RNA-associated protein 5
D 106963084 utp6; U3 small nucleolar RNA-associated protein 6 homolog K14557 UTP6; U3 small nucleolar RNA-associated protein 6
D 106934923 wdr46; WD repeat-containing protein 46 isoform X1 K14768 UTP7; U3 small nucleolar RNA-associated protein 7
D 106937807 heatr1; HEAT repeat-containing protein 1 K14550 UTP10; U3 small nucleolar RNA-associated protein 10
D 106948725 utp11l; probable U3 small nucleolar RNA-associated protein 11 K14769 UTP11; U3 small nucleolar RNA-associated protein 11
D 106954236 wdr3; WD repeat-containing protein 3 K14556 DIP2; U3 small nucleolar RNA-associated protein 12
D 106948151 tbl3; transducin beta-like protein 3 K14555 UTP13; U3 small nucleolar RNA-associated protein 13
D 106934875 U3 small nucleolar RNA-associated protein 14 homolog A-like K14567 UTP14; U3 small nucleolar RNA-associated protein 14
D 106958052 utp15; U3 small nucleolar RNA-associated protein 15 homolog K14549 UTP15; U3 small nucleolar RNA-associated protein 15
D 106951657 wdr75; WD repeat-containing protein 75 K14552 NAN1; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
D 106935029 utp18; U3 small nucleolar RNA-associated protein 18 homolog isoform X1 K14553 UTP18; U3 small nucleolar RNA-associated protein 18
D 106946742 noc4l; nucleolar complex protein 4 homolog K14771 NOC4; U3 small nucleolar RNA-associated protein 19
D 106940415 nucleolar complex protein 4 homolog K14771 NOC4; U3 small nucleolar RNA-associated protein 19
D 106957907 utp20; small subunit processome component 20 homolog K14772 UTP20; U3 small nucleolar RNA-associated protein 20
D 106943018 wdr36; WD repeat-containing protein 36 K14554 UTP21; U3 small nucleolar RNA-associated protein 21
D 106953757 nol6; nucleolar protein 6 K14544 UTP22; U3 small nucleolar RNA-associated protein 22
D 106958855 utp23; rRNA-processing protein UTP23 homolog K14773 UTP23; U3 small nucleolar RNA-associated protein 23
D 106957606 fcf1; rRNA-processing protein FCF1 homolog K14566 UTP24; U3 small nucleolar RNA-associated protein 24
D 106954003 diexf; digestive organ expansion factor homolog K14774 UTP25; U3 small nucleolar RNA-associated protein 25
D 106960062 rsl1d1; ribosomal L1 domain-containing protein 1 K14775 UTP30; ribosome biogenesis protein UTP30
C Helicases
D 106937239 ddx10; probable ATP-dependent RNA helicase DDX10 K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7]
D 106939447 ddx18; ATP-dependent RNA helicase DDX18 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D 106937024 ddx47; probable ATP-dependent RNA helicase DDX47 K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7]
D 106944921 ddx49; probable ATP-dependent RNA helicase DDX49 K14778 DDX49; ATP-dependent RNA helicase DDX49/DBP8 [EC:5.6.2.7]
D 106955040 ddx52; probable ATP-dependent RNA helicase DDX52 K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7]
D 106946581 putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D 106948253 dhx15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D 106956810 dhx37; probable ATP-dependent RNA helicase DHX37 K14780 DHX37; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6]
D 106940127 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
C GTPase
D 106943081 ribosome biogenesis protein BMS1 homolog isoform X1 K14569 BMS1; ribosome biogenesis protein BMS1
D 106936479 bms1; ribosome biogenesis protein BMS1 homolog K14569 BMS1; ribosome biogenesis protein BMS1
C RNase
D 106951418 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D 106954969 rexo4; RNA exonuclease 4 K18327 REXO4; RNA exonuclease 4 [EC:3.1.-.-]
D 106950323 dbr1; lariat debranching enzyme K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-]
D 106950561 lariat debranching enzyme-like K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-]
C Kinase
D 106949356 casein kinase II subunit alpha'-like K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 106937199 csnk2a2; casein kinase II subunit alpha' K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 106945857 casein kinase II subunit alpha-like K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 106937753 casein kinase II subunit alpha-like K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 106959688 casein kinase II subunit alpha isoform X1 K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 106937748 casein kinase II subunit beta-like K03115 CSNK2B; casein kinase II subunit beta
D 106958853 casein kinase II subunit beta K03115 CSNK2B; casein kinase II subunit beta
C Other 90S particles
D 106936228 aatf; protein AATF K14782 AATF; protein AATF/BFR2
D 106964551 cmss1; protein CMSS1 isoform X1 K14784 CMS1; protein CMS1
D 106955757 emg1; ribosomal RNA small subunit methyltransferase NEP1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D 106941620 abt1; activator of basal transcription 1 isoform X1 K14785 ESF2; ESF2/ABP1 family protein
D 106954810 protein KRI1 homolog K14786 KRI1; protein KRI1
D 106963933 protein KRI1 homolog K14786 KRI1; protein KRI1
D 106952918 krr1; KRR1 small subunit processome component homolog K06961 KRR1; ribosomal RNA assembly protein
D 106944568 rbm19; probable RNA-binding protein 19 K14787 MRD1; multiple RNA-binding domain-containing protein 1
D 106957616 nat10; N-acetyltransferase 10 K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-]
D 106958623 ncl; nucleolin isoform X1 K11294 NCL; nucleolin
D 106964795 nucleolin-like isoform X1 K11294 NCL; nucleolin
D 106953965 nol10; nucleolar protein 10 K14788 NOL10; ribosome biogenesis protein ENP2
D 106962981 nop9; nucleolar protein 9 K14790 NOP9; nucleolar protein 9
D 106959616 pinx1; PIN2/TERF1-interacting telomerase inhibitor 1 isoform X1 K11135 PINX1; Pin2-interacting protein X1
D 106953800 pwp1; periodic tryptophan protein 1 homolog K14791 PWP1; periodic tryptophan protein 1
D 106948198 rcl1; RNA 3'-terminal phosphate cyclase-like protein K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein
D 106945661 pdcd11; protein RRP5 homolog K14792 RRP5; rRNA biogenesis protein RRP5
D 106959013 rrp9; U3 small nucleolar RNA-interacting protein 2 isoform X1 K14793 RRP9; ribosomal RNA-processing protein 9
D 106961068 rrp12; RRP12-like protein isoform X1 K14794 RRP12; ribosomal RNA-processing protein 12
D 106962699 rrp36; ribosomal RNA processing protein 36 homolog K14795 RRP36; ribosomal RNA-processing protein 36
D 106950891 dcaf13; DDB1- and CUL4-associated factor 13 K11806 DCAF13; DDB1- and CUL4-associated factor 13
B Pre-40S particles
C Kinases
D 106935188 riok1; serine/threonine-protein kinase RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D 106944593 riok2; serine/threonine-protein kinase RIO2 isoform X1 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D 106964205 dimt1; probable dimethyladenosine transferase K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183]
D 106957850 wbscr22; probable 18S rRNA (guanine-N(7))-methyltransferase K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309]
D 106955206 mettl5; methyltransferase-like protein 5 K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5
D 106954846 bysl; bystin K14797 ENP1; essential nuclear protein 1
D 106948734 ltv1; protein LTV1 homolog isoform X1 K14798 LTV1; protein LTV1
D 106938655 nob1; RNA-binding protein NOB1 K11883 NOB1; RNA-binding protein NOB1
D 106934780 pno1; RNA-binding protein PNO1 K11884 PNO1; RNA-binding protein PNO1
D 106938149 ran; GTP-binding nuclear protein Ran isoform X1 K07936 RAN; GTP-binding nuclear protein Ran
D 106943547 ak6; adenylate kinase isoenzyme 6 K18532 AK6; adenylate kinase [EC:2.7.4.3]
D 106947922 tsr1; pre-rRNA-processing protein TSR1 homolog K14799 TSR1; pre-rRNA-processing protein TSR1
D 106949336 tsr2; pre-rRNA-processing protein TSR2 homolog K14800 TSR2; pre-rRNA-processing protein TSR2
D 106936092 tsr3; ribosome biogenesis protein TSR3 homolog K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D 106940168 ribosome biogenesis protein TSR3 homolog K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D 106958990 pdcd2; programmed cell death protein 2 K14801 TSR4; pre-rRNA-processing protein TSR4
D 106939632 pdcd2l; programmed cell death protein 2-like K14801 TSR4; pre-rRNA-processing protein TSR4
D 106936815 rps19bp1; active regulator of SIRT1 K26536 RPS19BP1; active regulator of SIRT1
D 106962366 exportin-1-like K14290 XPO1; exportin-1
D 106952069 exportin-1 isoform X1 K14290 XPO1; exportin-1
D 106965228 kpnb1; importin subunit beta-1 K14293 KPNB1; importin subunit beta-1
D 106963590 tnpo1; transportin-1 K18752 TNPO1; transportin-1
D 106961451 ipo4; importin-4 K20221 IPO4; importin-4
D 106938231 ipo5; importin-5 K20222 IPO5; importin-5
D 106938535 ipo7; importin-7 K20223 IPO7; importin-7
D 106965145 ipo9; importin-9 K20224 IPO9; importin-9
C Other pre-40S particles
D 106956407 atp8a1; phospholipid-transporting ATPase IA isoform X1 K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1]
D 106944628 atp8a2; phospholipid-transporting ATPase IB isoform X1 K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1]
D 106947003 eif3j; eukaryotic translation initiation factor 3 subunit J isoform X1 K03245 EIF3J; translation initiation factor 3 subunit J
D 106952663 abce1; ATP-binding cassette sub-family E member 1 K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
D 106950832 probable ATP-dependent RNA helicase DDX5 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D 106937022 probable ATP-dependent RNA helicase DDX5 isoform X1 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D 106939447 ddx18; ATP-dependent RNA helicase DDX18 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D 106939845 ddx21; nucleolar RNA helicase 2 K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7]
D 106951698 ATP-dependent RNA helicase DDX24-like K14805 DDX24; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7]
D 106934508 ddx27; probable ATP-dependent RNA helicase DDX27 K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
D 106942342 probable ATP-dependent RNA helicase DDX31 K14806 DDX31; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7]
D 106937471 ddx51; ATP-dependent RNA helicase DDX51 K14807 DDX51; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7]
D 106944533 ddx54; ATP-dependent RNA helicase DDX54 isoform X1 K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7]
D 106954797 ddx55; ATP-dependent RNA helicase DDX55 K14809 DDX55; ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
D 106948120 ddx56; probable ATP-dependent RNA helicase DDX56 K14810 DDX56; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
D 106939763 skiv2l2; superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C GTPases
D 106950088 gnl3; guanine nucleotide-binding protein-like 3 K14538 NUG1; nuclear GTP-binding protein
D 106957359 gnl3l; guanine nucleotide-binding protein-like 3-like protein K14538 NUG1; nuclear GTP-binding protein
D 106954895 gnl2; nucleolar GTP-binding protein 2 K14537 NUG2; nuclear GTP-binding protein
D 106955202 gtpbp4; nucleolar GTP-binding protein 1 K06943 NOG1; nucleolar GTP-binding protein
D 106954418 lsg1; large subunit GTPase 1 homolog K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-]
D 106961261 eftud1; elongation factor Tu GTP-binding domain-containing protein 1 isoform X1 K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-]
C RNases
D 106941181 rexo2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D 106952920 RNA exonuclease 1 homolog isoform X1 K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 106959226 putative RNA exonuclease NEF-sp isoform X1 K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 106953033 rexo1; RNA exonuclease 1 homolog isoform X1 K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 106962108 xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D 106951812 xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D RNase MRP
E 106937905 pop1; ribonucleases P/MRP protein subunit POP1 isoform X1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
E 106938035 pop4; ribonuclease P protein subunit p29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E 106944891 pop5; ribonuclease P/MRP protein subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E 106939548 rpp30; ribonuclease P protein subunit p30 isoform X1 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
E 106963061 pop7; ribonuclease P protein subunit p20 K14527 RPP20; ribonuclease P/MRP protein subunit RPP20 [EC:3.1.26.5]
E 106943441 rpp25l; ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E 106940646 uncharacterized protein LOC106940646 K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E 106948466 ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E 106963876 rpp38; ribonuclease P protein subunit p38 K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5]
E 106935189 rpp40; ribonuclease P protein subunit p40 K14530 RPP40; ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5]
C Kinases
D 106936016 polynucleotide 5'-hydroxyl-kinase NOL9-like K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
D 106936021 polynucleotide 5'-hydroxyl-kinase NOL9-like K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
C Export and cytoplasmic maturation factors
D 106942571 abcf2; ATP-binding cassette sub-family F member 2 K06185 ABCF2; ATP-binding cassette, subfamily F, member 2
D 106943690 ATP-binding cassette sub-family F member 2-like K06185 ABCF2; ATP-binding cassette, subfamily F, member 2
D 106952441 dnajc21; dnaJ homolog subfamily C member 21 K09506 DNAJA5; DnaJ homolog subfamily A member 5
D 106956014 eif6; eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6
D 106961650 heat shock 70 kDa protein 1 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 106945881 LOW QUALITY PROTEIN: heat shock cognate 71 kDa protein-like K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 106946543 heat shock 70 kDa protein-like K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 106948160 heat shock cognate 71 kDa protein-like K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 106964361 hspa8; heat shock cognate 71 kDa protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 106954734 mrto4; mRNA turnover protein 4 homolog K14815 MRT4; mRNA turnover protein 4
D 106952942 nmd3; 60S ribosomal export protein NMD3 K07562 NMD3; 60S ribosomal export protein NMD3
D 106936705 nxf1; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
D 106964081 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D 106938149 ran; GTP-binding nuclear protein Ran isoform X1 K07936 RAN; GTP-binding nuclear protein Ran
D 106949215 znf622; zinc finger protein 622 K14816 REI1; pre-60S factor REI1
D 106947590 sbds; ribosome maturation protein SBDS K14574 SDO1; ribosome maturation protein SDO1
D 106948212 spata5; spermatogenesis-associated protein 5 isoform X1 K14575 AFG2; AAA family ATPase
D 106934389 spata5l1; spermatogenesis-associated protein 5-like protein 1 K26051 SPATA5L1; ribosome biogenesis protein SPATA5L1 [EC:3.6.4.10]
D 106950002 cinp; cyclin-dependent kinase 2-interacting protein isoform X1 K26052 CINP; cyclin-dependent kinase 2-interacting protein
D 106957542 uncharacterized protein C1orf109 homolog isoform X1 K26053 C1ORF109; ribosome biogenesis protein C1orf109
D 106962366 exportin-1-like K14290 XPO1; exportin-1
D 106952069 exportin-1 isoform X1 K14290 XPO1; exportin-1
D 106965228 kpnb1; importin subunit beta-1 K14293 KPNB1; importin subunit beta-1
D 106963590 tnpo1; transportin-1 K18752 TNPO1; transportin-1
D 106961451 ipo4; importin-4 K20221 IPO4; importin-4
D 106938231 ipo5; importin-5 K20222 IPO5; importin-5
D 106938535 ipo7; importin-7 K20223 IPO7; importin-7
D 106965145 ipo9; importin-9 K20224 IPO9; importin-9
D 106951356 dusp12; dual specificity protein phosphatase 12 K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48]
C 5-FMC complex
D 106945864 tex10; testis-expressed sequence 10 protein K14827 IPI1; pre-rRNA-processing protein IPI1
D 106957515 WD repeat-containing protein 18-like K14829 IPI3; pre-rRNA-processing protein IPI3
D 106947657 las1l; ribosomal biogenesis protein LAS1L K16912 LAS1; ribosomal biogenesis protein LAS1
D 106956128 pelp1; proline-, glutamic acid- and leucine-rich protein 1 isoform X1 K16913 PELP1; proline-, glutamic acid- and leucine-rich protein 1
D 106956110 sentrin-specific protease 3-like K08593 SENP3; sentrin-specific protease 3 [EC:3.4.22.68]
C Ribosome quality control proteins
D 106935359 ltn1; E3 ubiquitin-protein ligase listerin K22377 LTN1; E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
D 106951248 tcf25; transcription factor 25 K24970 TCF25; transcription factor 25
D 106936486 nemf; nuclear export mediator factor NEMF isoform X1 K24971 NEMF; nuclear export mediator factor NEMF
D 106944587 vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
D 106945994 transitional endoplasmic reticulum ATPase-like isoform X1 K13525 VCP; transitional endoplasmic reticulum ATPase
D 106960896 nploc4; nuclear protein localization protein 4 homolog K14015 NPLOC4; nuclear protein localization protein 4
D 106956801 ufd1l; ubiquitin fusion degradation protein 1 homolog K14016 UFD1; ubiquitin fusion degradation protein 1
D 106954084 ptrhd1; putative peptidyl-tRNA hydrolase PTRHD1 isoform X1 K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29]
D 106952809 ankzf1; ankyrin repeat and zinc finger domain-containing protein 1 K26089 ANKZF1; ankyrin repeat and zinc finger domain-containing protein 1
C Other pre-60S particles
D 106952444 brix1; ribosome biogenesis protein BRX1 homolog K14820 BRX1; ribosome biogenesis protein BRX1
D 106945620 znf593; zinc finger protein 593 K14821 BUD20; bud site selection protein 20
D 106949605 coiled-coil domain-containing protein 86-like K14822 CGR1; rRNA-processing protein CGR1
D 106948222 coiled-coil domain-containing protein 86-like K14822 CGR1; rRNA-processing protein CGR1
D 106961322 ebna1bp2; probable rRNA-processing protein EBP2 K14823 EBP2; rRNA-processing protein EBP2
D 106951836 bop1; ribosome biogenesis protein BOP1 isoform X1 K14824 ERB1; ribosome biogenesis protein ERB1
D 106938442 transmembrane emp24 domain-containing protein 5-like K14825 TMED5; p24 family protein gamma-2
D 106938648 pak1ip1; p21-activated protein kinase-interacting protein 1 K14830 MAK11; protein MAK11
D 106935338 mak16; protein MAK16 homolog K14831 MAK16; protein MAK16
D 106942583 cebpz; CCAAT/enhancer-binding protein zeta isoform X1 K14832 MAK21; ribosome biogenesis protein MAK21
D 106957767 mdn1; midasin isoform X1 K14572 MDN1; midasin
D 106950463 nip7; 60S ribosome subunit biogenesis protein NIP7 homolog K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
D 106949463 noc2l; nucleolar complex protein 2 homolog K14833 NOC2; nucleolar complex protein 2
D 106936411 noc3l; nucleolar complex protein 3 homolog isoform X1 K14834 NOC3; nucleolar complex protein 3
D 106955754 nop2; LOW QUALITY PROTEIN: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310]
D 106958008 rbm28; RNA-binding protein 28 isoform X1 K14573 NOP4; nucleolar protein 4
D 106939277 nucleolar protein 8-like K14836 NOP8; nucleolar protein 8
D 106962264 rbm34; RNA-binding protein 34 K14837 NOP12; nucleolar protein 12
D 106942612 nifk; MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X1 K14838 NOP15; nucleolar protein 15
D 106942900 glioma tumor suppressor candidate region gene 2 protein-like K14840 NOP53; nucleolar protein 53
D 106935428 gltscr2; glioma tumor suppressor candidate region gene 2 protein K14840 NOP53; nucleolar protein 53
D 106962662 wdr74; WD repeat-containing protein 74 K14841 NSA1; ribosome biogenesis protein NSA1
D 106954226 nsa2; ribosome biogenesis protein NSA2 homolog K14842 NSA2; ribosome biogenesis protein NSA2
D 106944561 pes1; pescadillo homolog isoform X1 K14843 PES1; pescadillo
D 106940675 pum3; pumilio domain-containing protein KIAA0020 homolog isoform X1 K14844 PUF6; pumilio homology domain family member 6
D 106953800 pwp1; periodic tryptophan protein 1 homolog K14791 PWP1; periodic tryptophan protein 1
D 106956956 dxo; decapping and exoribonuclease protein K14845 RAI1; RAT1-interacting protein
D 106962978 bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66-like isoform X1 K16914 RIOX1; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69]
D 106959547 nvl; nuclear valosin-containing protein-like K14571 RIX7; ribosome biogenesis ATPase
D 106959872 rpf1; ribosome production factor 1 K14846 RPF1; ribosome production factor 1
D 106953812 rpf2; ribosome production factor 2 homolog K14847 RPF2; ribosome production factor 2
D 106953522 grwd1; glutamate-rich WD repeat-containing protein 1 K14848 RRB1; ribosome assembly protein RRB1
D 106936078 ribosomal RNA processing protein 1 homolog A-like K14849 RRP1; ribosomal RNA-processing protein 1
D 106960553 rrp8; ribosomal RNA-processing protein 8 K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287]
D 106961068 rrp12; RRP12-like protein isoform X1 K14794 RRP12; ribosomal RNA-processing protein 12
D 106950704 nol12; nucleolar protein 12 K14851 RRP17; ribosomal RNA-processing protein 17
D 106935211 rrs1; ribosome biogenesis regulatory protein homolog K14852 RRS1; regulator of ribosome biosynthesis
D 106936261 nle1; notchless protein homolog 1 isoform X1 K14855 RSA4; ribosome assembly protein 4
D 106959056 sdad1; protein SDA1 homolog K14856 SDA1; protein SDA1
D 106959874 ftsj3; pre-rRNA processing protein FTSJ3 K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-]
D 106938334 suppressor of SWI4 1 homolog K14859 SSF1_2; ribosome biogenesis protein SSF1/2
D 106949046 tma16; LOW QUALITY PROTEIN: translation machinery-associated protein 16 K14860 TMA16; translation machinery-associated protein 16
D 106937925 urb1; nucleolar pre-ribosomal-associated protein 1 K14861 URB1; nucleolar pre-ribosomal-associated protein 1
D 106958999 urb2; unhealthy ribosome biogenesis protein 2 homolog K14862 URB2; nucleolar pre-ribosomal-associated protein 2
D 106952542 ribosome biogenesis protein wdr12-like K14863 WDR12; ribosome biogenesis protein
D 106964055 ribosome biogenesis protein wdr12 K14863 WDR12; ribosome biogenesis protein
D 106952540 nufip1; nuclear fragile X mental retardation-interacting protein 1 isoform X1 K23308 NUFIP1; nuclear fragile X mental retardation-interacting protein 1
D 106956651 znhit3; zinc finger HIT domain-containing protein 3 isoform X1 K23309 ZNHIT3; zinc finger HIT domain-containing protein 3
B Other ribosome biogenesis factors
C 106942888 protein BCCIP homolog K15262 BCP1; protein BCP1
C 106937666 protein BCCIP homolog K15262 BCP1; protein BCP1
C 106953654 lyar; cell growth-regulating nucleolar protein K15263 LYER; cell growth-regulating nucleolar protein
C 106958295 nsun4; 5-methylcytosine rRNA methyltransferase NSUN4 K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4 [EC:2.1.1.-]
C 106952891 nsun5; probable 28S rRNA (cytosine-C(5))-methyltransferase K15264 NSUN5; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311]
C 106962114 tfb1m; dimethyladenosine transferase 1, mitochondrial K15266 TFB1M; dimethyladenosine transferase 1, mitochondrial [EC:2.1.1.-]
C 106945439 mrm1; rRNA methyltransferase 1, mitochondrial K15507 MRM1; 21S rRNA (GM2251-2'-O)-methyltransferase [EC:2.1.1.-]
C 106958707 probable methyltransferase BTM2 homolog K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase [EC:2.1.1.286]
C 106947532 rnmtl1; rRNA methyltransferase 3, mitochondrial K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase [EC:2.1.1.-]
C 106941198 zcchc4; zinc finger CCHC domain-containing protein 4 K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4 [EC:2.1.1.-]
C 106945600 ddx28; probable ATP-dependent RNA helicase DDX28 K20096 DDX28; ATP-dependent RNA helicase DDX28 [EC:5.6.2.7]
C 106941559 dhx33; putative ATP-dependent RNA helicase DHX33 K17820 DHX33; ATP-dependent RNA helicase DHX33 [EC:5.6.2.6]
C 106955820 ighmbp2; DNA-binding protein SMUBP-2 K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
C 106953991 isg20l2; interferon-stimulated 20 kDa exonuclease-like 2 isoform X1 K18329 ISG20L2; interferon-stimulated 20 kDa exonuclease-like 2 [EC:3.1.-.-]
C 106962172 kdm8; lysine-specific demethylase 8 K10277 KDM8; [protein]-arginine 3-hydroxylase / protease [EC:1.14.11.73 3.4.-.-]
C 106953940 phf6; PHD finger protein 6 isoform X1 K23310 PHF6; PHD finger protein 6
C 106956660 eral1; GTPase Era, mitochondrial K03595 era; GTPase
C 106960205 uncharacterized protein C12orf45 homolog K26142 NOPCHAP1; NOP protein chaperone 1
C 106955348 proliferation-associated protein 2G4-like K26736 PA2G4; ERBB-3 binding protein
C 106963880 proliferation-associated protein 2G4 K26736 PA2G4; ERBB-3 binding protein
C 106944801 mtg1; mitochondrial ribosome-associated GTPase 1 isoform X1 K19828 MTG1; mitochondrial GTPase 1
C 106961158 mtg2; mitochondrial ribosome-associated GTPase 2 K03979 obgE; GTPase [EC:3.6.5.-]
C 106939776 noa1; nitric oxide-associated protein 1 K19832 NOA1; nitric oxide-associated protein 1
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D 106949150 nop56; nucleolar protein 56 K14564 NOP56; nucleolar protein 56
D 106964891 rpl7a; 60S ribosomal protein L7a K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D 106950000 dkc1; H/ACA ribonucleoprotein complex subunit 4 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D 106945503 nop10; H/ACA ribonucleoprotein complex subunit 3 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
B rRNA modification factors
C 16S rRNA modification factors
C 23S rRNA modification factors
D 106960486 ftsj2; rRNA methyltransferase 2, mitochondrial K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
B ribosomal protein modification factors
B rRNA processing factors
C 106951418 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
B rRNA helicases
B GTPases
C 106956660 eral1; GTPase Era, mitochondrial K03595 era; GTPase
C 106961158 mtg2; mitochondrial ribosome-associated GTPase 2 K03979 obgE; GTPase [EC:3.6.5.-]
B Other maturation factors
C 106948820 yrdc; yrdC domain-containing protein, mitochondrial K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024