+D GENES KO
#
KEGG Orthology (KO) - Candidatus Portiera aleyrodidarum TV
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pld00010]
D PalTV_215 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PalTV_168 aceE; pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PalTV_167 aceF; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00020 Citrate cycle (TCA cycle) [PATH:pld00020]
D PalTV_077 sucA; 2-oxoglutarate dehydrogenase, E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D PalTV_076 sucB; 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PalTV_168 aceE; pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PalTV_167 aceF; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:pld00030]
D PalTV_216 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PalTV_171 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PalTV_233 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
C 00040 Pentose and glucuronate interconversions
C 00051 Fructose and mannose metabolism
C 00052 Galactose metabolism
D PalTV_215 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism
D PalTV_215 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pld00520]
D PalTV_215 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00620 Pyruvate metabolism [PATH:pld00620]
D PalTV_168 aceE; pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PalTV_167 aceF; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PalTV_040 leuA; isopropylmalate/homocitrate/citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00640 Propanoate metabolism
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00650 Butanoate metabolism
D PalTV_098 ilvI; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PalTV_097 ilvH; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:pld00660]
D PalTV_098 ilvI; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PalTV_097 ilvH; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PalTV_043 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PalTV_044 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PalTV_045 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pld00190]
D PalTV_279 nuoA; NADH:ubiquinone oxidoreductase subunit 3 (chain A) K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D PalTV_280 nuoB; NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D PalTV_281 nuoC; NADH dehydrogenase subunit C/D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D PalTV_282 nuoE; NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D PalTV_283 nuoF; NADH dehydrogenase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D PalTV_284 nuoG; NADH dehydrogenase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D PalTV_285 nuoH; NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D PalTV_286 nuoI; NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D PalTV_287 nuoJ; NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D PalTV_288 nuoK; NADH dehydrogenase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D PalTV_289 nuoL; NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D PalTV_290 nuoM; NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D PalTV_291 nuoN; NADH:ubiquinone oxidoreductase subunit 2 (chain N) K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D PalTV_151 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PalTV_152 cyoD; cytochrome bo3 quinol oxidase subunit 4 K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D PalTV_153 cyoC; cytochrome bo3 quinol oxidase subunit 3 K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D PalTV_154 cyoB; cytochrome bo3 quinol oxidase subunit 1 K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D PalTV_155 cyoA; cytochrome bo3 quinol oxidase subunit 2 K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D PalTV_262 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PalTV_260 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PalTV_261 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PalTV_263 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PalTV_259 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PalTV_266 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PalTV_264 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PalTV_265 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle
C 00720 Other carbon fixation pathways
D PalTV_218 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
C 00680 Methane metabolism
C 00910 Nitrogen metabolism
C 00920 Sulfur metabolism
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis
D PalTV_037 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis
D PalTV_037 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
C 00564 Glycerophospholipid metabolism
D PalTV_205 cls; phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism
D PalTV_233 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
C 00240 Pyrimidine metabolism [PATH:pld00240]
D PalTV_012 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PalTV_013 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PalTV_242 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pld00250]
D PalTV_249 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PalTV_294 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PalTV_012 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PalTV_013 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
C 00260 Glycine, serine and threonine metabolism [PATH:pld00260]
D PalTV_194 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PalTV_046 asd; aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PalTV_092 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PalTV_297 thrB; putative homoserine kinase type II (protein kinase fold) K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D PalTV_091 thrC; L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PalTV_277 ilvA; threonine ammonia-lyase, biosynthetic, long form K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PalTV_070 trpA; tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PalTV_071 trpB; tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:pld00270]
D PalTV_028 metE; methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PalTV_194 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PalTV_046 asd; aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PalTV_092 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
C 00280 Valine, leucine and isoleucine degradation [PATH:pld00280]
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pld00290]
D PalTV_277 ilvA; threonine ammonia-lyase, biosynthetic, long form K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PalTV_043 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PalTV_044 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PalTV_045 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D PalTV_098 ilvI; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PalTV_097 ilvH; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PalTV_096 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PalTV_188 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PalTV_040 leuA; isopropylmalate/homocitrate/citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:pld00300]
D PalTV_092 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PalTV_194 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PalTV_046 asd; aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PalTV_169 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PalTV_014 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D PalTV_019 dapD; tetrahydrodipicolinate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D PalTV_067 argD; acetylornithine/succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PalTV_018 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PalTV_292 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PalTV_293 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00310 Lysine degradation [PATH:pld00310]
D PalTV_076 sucB; 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00220 Arginine biosynthesis [PATH:pld00220]
D PalTV_258 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D PalTV_249 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PalTV_294 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PalTV_012 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PalTV_013 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PalTV_067 argD; acetylornithine/succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism
C 00340 Histidine metabolism [PATH:pld00340]
D PalTV_225 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D PalTV_183 hisZ; ATP phosphoribosyltransferase involved in histidine biosynthesis K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D PalTV_055 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D PalTV_300 hisA; 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D PalTV_301 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D PalTV_299 hisF; imidazoleglycerol-phosphate synthase K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D PalTV_302 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D PalTV_298 hisC; histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00350 Tyrosine metabolism
D PalTV_298 hisC; histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism
D PalTV_298 hisC; histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism
D PalTV_076 sucB; 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pld00400]
D PalTV_027 aroF; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PalTV_033 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D PalTV_220 aroQ; 3-dehydroquinate dehydratase II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D PalTV_213 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D PalTV_032 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D PalTV_253 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D PalTV_042 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D PalTV_240 trpE; anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PalTV_239 trpG; anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PalTV_238 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D PalTV_048 trpF; phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D PalTV_237 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D PalTV_070 trpA; tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PalTV_071 trpB; tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PalTV_254 pheA; prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D PalTV_298 hisC; histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:pld00450]
D PalTV_028 metE; methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PalTV_179 sufS; cysteine desulfurase-like protein, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
C 00460 Cyanoamino acid metabolism
C 00470 D-Amino acid metabolism [PATH:pld00470]
D PalTV_292 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PalTV_293 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:pld00480]
D PalTV_171 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PalTV_216 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis
C 00550 Peptidoglycan biosynthesis
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism
C 00740 Riboflavin metabolism
C 00750 Vitamin B6 metabolism
D PalTV_091 thrC; L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism
C 00770 Pantothenate and CoA biosynthesis [PATH:pld00770]
D PalTV_098 ilvI; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PalTV_097 ilvH; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PalTV_096 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PalTV_188 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
C 00780 Biotin metabolism
C 00785 Lipoic acid metabolism [PATH:pld00785]
D PalTV_198 lipB; lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D PalTV_197 lipA; lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PalTV_168 aceE; pyruvate dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PalTV_167 aceF; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PalTV_077 sucA; 2-oxoglutarate dehydrogenase, E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D PalTV_076 sucB; 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
C 00790 Folate biosynthesis
C 00670 One carbon pool by folate
D PalTV_218 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pld00860]
D PalTV_078 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PalTV_151 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:pld00906]
D PalTV_230 crtB; phytoene/squalene synthetase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D PalTV_229 crtI; phytoene desaturase K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31]
D PalTV_231 crtY; lycopene cyclase protein K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:pld00261]
D PalTV_194 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PalTV_046 asd; aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PalTV_169 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PalTV_014 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis
D PalTV_215 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D PalTV_215 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis
D PalTV_298 hisC; histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D PalTV_240 trpE; anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PalTV_239 trpG; anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D PalTV_037 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D PalTV_213 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pld03020]
D PalTV_141 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PalTV_140 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PalTV_110 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pld03010]
D PalTV_252 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PalTV_021 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PalTV_128 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PalTV_111 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PalTV_117 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PalTV_163 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PalTV_138 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PalTV_120 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PalTV_223 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PalTV_135 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PalTV_112 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PalTV_139 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PalTV_113 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PalTV_121 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D PalTV_004 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PalTV_095 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PalTV_125 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PalTV_162 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PalTV_130 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PalTV_104 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PalTV_157 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D PalTV_131 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PalTV_134 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PalTV_133 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PalTV_122 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PalTV_119 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PalTV_142 rplL; ribosomal protein L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PalTV_161 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PalTV_143 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PalTV_144 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PalTV_224 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PalTV_124 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PalTV_116 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PalTV_127 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PalTV_109 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PalTV_118 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PalTV_093 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PalTV_060 rplT; LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D PalTV_107 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PalTV_129 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PalTV_132 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PalTV_123 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PalTV_234 rplY; ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PalTV_106 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PalTV_086 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PalTV_126 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PalTV_031 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PalTV_085 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PalTV_271 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D PalTV_061 rpmI; LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D PalTV_114 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D PalTV_083 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PalTV_081 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PalTV_080 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pld00970]
D PalTV_017 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PalTV_247 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PalTV_192 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PalTV_209 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PalTV_257 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PalTV_236 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PalTV_164 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PalTV_246 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PalTV_304 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PalTV_176 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PalTV_149 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PalTV_175 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PalTV_208 tRNA-His K14226 tRNA-His; tRNA His
D PalTV_082 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PalTV_009 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PalTV_051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PalTV_245 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PalTV_241 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PalTV_008 tRNA-Met K14230 tRNA-Met; tRNA Met
D PalTV_235 tRNA-Met K14230 tRNA-Met; tRNA Met
D PalTV_274 tRNA-Met K14230 tRNA-Met; tRNA Met
D PalTV_303 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PalTV_210 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PalTV_200 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PalTV_193 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PalTV_199 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PalTV_172 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PalTV_148 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PalTV_295 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PalTV_305 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PalTV_147 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PalTV_150 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PalTV_166 tRNA-Val K14237 tRNA-Val; tRNA Val
D PalTV_243 tRNA-Val K14237 tRNA-Val; tRNA Val
D PalTV_078 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PalTV_227 gatA; glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PalTV_228 gatB; glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PalTV_212 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PalTV_195 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PalTV_203 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PalTV_276 glyQ; glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PalTV_275 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PalTV_050 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PalTV_211 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PalTV_068 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PalTV_073 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PalTV_103 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PalTV_089 lysS; lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PalTV_063 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PalTV_190 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PalTV_059 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PalTV_058 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PalTV_016 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PalTV_084 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pld03060]
D PalTV_115 secY; protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D PalTV_146 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PalTV_269 yidC; membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PalTV_256 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PalTV_065 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PalTV_102 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pld04122]
D PalTV_052 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D PalTV_178 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
C 03050 Proteasome
C 03018 RNA degradation [PATH:pld03018]
D PalTV_035 rne; ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D PalTV_003 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PalTV_079 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PalTV_026 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PalTV_001 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PalTV_251 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pld03030]
D PalTV_057 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PalTV_024 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PalTV_170 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PalTV_038 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PalTV_074 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PalTV_272 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PalTV_160 dnaB; primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PalTV_108 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
C 03410 Base excision repair
C 03420 Nucleotide excision repair
C 03430 Mismatch repair [PATH:pld03430]
D PalTV_196 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D PalTV_186 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D PalTV_108 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PalTV_024 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PalTV_272 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PalTV_170 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PalTV_074 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PalTV_038 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PalTV_057 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
C 03440 Homologous recombination [PATH:pld03440]
D PalTV_108 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PalTV_202 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PalTV_024 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PalTV_272 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PalTV_170 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PalTV_074 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PalTV_038 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PalTV_057 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:pld03070]
D PalTV_146 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PalTV_115 secY; protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D PalTV_269 yidC; membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PalTV_256 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pld02020]
D PalTV_039 trypsin-like serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pld02024]
D PalTV_240 trpE; anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PalTV_239 trpG; anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PalTV_027 aroF; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PalTV_269 yidC; membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PalTV_146 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PalTV_115 secY; protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D PalTV_256 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D PalTV_156 rpoD; RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
C 01502 Vancomycin resistance
C 01503 Cationic antimicrobial peptide (CAMP) resistance
D PalTV_039 trypsin-like serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pld01000]
C 01001 Protein kinases
C 01009 Protein phosphatases and associated proteins
C 01002 Peptidases and inhibitors [BR:pld01002]
D PalTV_102 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D PalTV_018 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PalTV_020 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PalTV_010 ftsH; membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PalTV_039 trypsin-like serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D PalTV_207 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PalTV_189 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D PalTV_065 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PalTV_056 sohB; protease sohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D PalTV_030 hslV; HslV component of HslUV peptidase K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
C 01003 Glycosyltransferases
C 01005 Lipopolysaccharide biosynthesis proteins
C 01011 Peptidoglycan biosynthesis and degradation proteins
C 01004 Lipid biosynthesis proteins
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:pld01006]
D PalTV_230 crtB; phytoene/squalene synthetase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D PalTV_185 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PalTV_151 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:pld01007]
D PalTV_078 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PalTV_212 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PalTV_016 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PalTV_084 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PalTV_211 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PalTV_103 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PalTV_068 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PalTV_073 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PalTV_089 lysS; lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PalTV_203 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PalTV_190 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PalTV_276 glyQ; glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PalTV_275 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PalTV_050 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PalTV_063 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PalTV_195 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PalTV_059 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PalTV_058 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PalTV_298 hisC; histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PalTV_067 argD; acetylornithine/succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:pld00194]
D PalTV_259 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PalTV_260 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PalTV_261 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PalTV_262 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PalTV_263 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PalTV_264 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PalTV_265 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PalTV_266 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pld03000]
C 03021 Transcription machinery [BR:pld03021]
D PalTV_110 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PalTV_141 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PalTV_140 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PalTV_156 rpoD; RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D PalTV_087 rpoH; RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D PalTV_007 nusA; NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D PalTV_145 nusG; transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D PalTV_011 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D PalTV_026 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:pld03019]
D PalTV_035 rne; ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D PalTV_079 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PalTV_003 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PalTV_026 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PalTV_001 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PalTV_251 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
C 03041 Spliceosome
C 03011 Ribosome [BR:pld03011]
D PalTV_252 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PalTV_021 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PalTV_128 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PalTV_111 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PalTV_117 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PalTV_163 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PalTV_138 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PalTV_120 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PalTV_223 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PalTV_135 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PalTV_112 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PalTV_139 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PalTV_113 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PalTV_121 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D PalTV_004 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PalTV_095 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PalTV_125 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PalTV_162 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PalTV_130 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PalTV_104 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PalTV_157 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D PalTV_131 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PalTV_134 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PalTV_133 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PalTV_122 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PalTV_119 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PalTV_161 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PalTV_143 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PalTV_144 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PalTV_142 rplL; ribosomal protein L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PalTV_224 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PalTV_124 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PalTV_116 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PalTV_127 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PalTV_109 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PalTV_118 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PalTV_093 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PalTV_060 rplT; LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D PalTV_107 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PalTV_129 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PalTV_132 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PalTV_123 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PalTV_106 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PalTV_086 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PalTV_126 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PalTV_031 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PalTV_085 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PalTV_271 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D PalTV_061 rpmI; LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D PalTV_114 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D PalTV_234 rplY; ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PalTV_080 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PalTV_083 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PalTV_081 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:pld03009]
D PalTV_064 era; GTP-binding protein Era K03595 era; GTPase
D PalTV_105 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D PalTV_007 nusA; NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D PalTV_145 nusG; transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D PalTV_159 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PalTV_088 rsmD; 16S rRNA m(2)G-966 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PalTV_221 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PalTV_036 rluC_rpmF; fused reading frame encoding pseudouridine synthase and ribosomal protein L32 K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D PalTV_101 rluD; 23S RNA-specific pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PalTV_094 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D PalTV_035 rne; ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D PalTV_079 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PalTV_191 engA; small GTP-binding protein domain protein K03977 engA; GTPase
D PalTV_005 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D PalTV_072 null; metalloprotein, YbeY/UPF0054 family K07042 ybeY; probable rRNA maturation factor
C 03016 Transfer RNA biogenesis [BR:pld03016]
D PalTV_078 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PalTV_063 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PalTV_103 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PalTV_073 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PalTV_212 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PalTV_089 lysS; lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PalTV_203 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PalTV_195 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PalTV_050 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PalTV_211 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PalTV_068 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PalTV_190 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PalTV_059 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PalTV_058 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PalTV_016 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PalTV_084 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PalTV_047 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PalTV_185 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PalTV_268 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PalTV_267 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PalTV_270 RNase P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D PalTV_222 Bacterial RNase P class A K01978 rnpB; M1 RNA
D PalTV_276 glyQ; glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PalTV_275 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PalTV_178 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PalTV_052 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D PalTV_025 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PalTV_165 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PalTV_003 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:pld03012]
D PalTV_006 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PalTV_062 infC; bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D PalTV_022 tsf; translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D PalTV_136 tufA; translation elongation factor Tu K02358 tuf; elongation factor Tu
D PalTV_137 fusA; translation elongation factor G K02355 fusA; elongation factor G
D PalTV_232 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D PalTV_023 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D PalTV_177 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D PalTV_090 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:pld03110]
D PalTV_100 clpB; ATP-dependent chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PalTV_206 clpX; ATP-dependent protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D PalTV_029 hslU; ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D PalTV_001 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PalTV_251 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PalTV_002 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PalTV_307 grpE; molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D PalTV_250 groES; chaperonin GroES K04078 groES; chaperonin GroES
D PalTV_039 trypsin-like serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D PalTV_010 ftsH; membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PalTV_266 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PalTV_248 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
C 04131 Membrane trafficking
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:pld03032]
D PalTV_160 dnaB; primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PalTV_108 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PalTV_024 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PalTV_272 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PalTV_074 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PalTV_038 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PalTV_057 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PalTV_170 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PalTV_255 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PalTV_273 gyrB; type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
C 03036 Chromosome and associated proteins [BR:pld03036]
D PalTV_267 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PalTV_244 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
C 03400 DNA repair and recombination proteins [BR:pld03400]
D PalTV_141 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PalTV_140 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PalTV_110 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PalTV_196 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D PalTV_186 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D PalTV_024 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PalTV_272 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PalTV_074 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PalTV_038 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PalTV_057 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PalTV_170 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PalTV_108 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PalTV_202 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PalTV_255 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PalTV_273 gyrB; type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
C 03029 Mitochondrial biogenesis [BR:pld03029]
D PalTV_006 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PalTV_062 infC; bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D PalTV_022 tsf; translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D PalTV_136 tufA; translation elongation factor Tu K02358 tuf; elongation factor Tu
D PalTV_137 fusA; translation elongation factor G K02355 fusA; elongation factor G
D PalTV_064 era; GTP-binding protein Era K03595 era; GTPase
D PalTV_016 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PalTV_073 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PalTV_203 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PalTV_227 gatA; glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PalTV_228 gatB; glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PalTV_108 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PalTV_001 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PalTV_307 grpE; molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D PalTV_251 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PalTV_250 groES; chaperonin GroES K04078 groES; chaperonin GroES
D PalTV_002 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PalTV_248 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin
D PalTV_244 ATPase involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PalTV_151 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PalTV_269 yidC; membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pld02000]
D PalTV_173 ABC-type polysaccharide/polyol phosphate export systems, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D PalTV_174 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PalTV_181 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D PalTV_217 MFS transporter, sugar porter (SP) family K08137 galP; MFS transporter, SP family, galactose:H+ symporter
D PalTV_204 mgtE; Mg2+ transporter MgtE K06213 mgtE; magnesium transporter
D PalTV_219 Na+/H+ dicarboxylate symporter K11102 gltP; proton glutamate symport protein
D PalTV_049 lysine efflux permease K06895 lysE; L-lysine exporter family protein LysE/ArgO
D PalTV_099 marC; multiple antibiotic transporter K05595 marC; multiple antibiotic resistance protein
D PalTV_201 hypothetical protein K03640 pal; peptidoglycan-associated lipoprotein
C 02044 Secretion system [BR:pld02044]
D PalTV_015 YGGT family protein K02221 yggT; YggT family protein
D PalTV_256 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PalTV_146 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PalTV_115 secY; protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D PalTV_269 yidC; membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins
C 02022 Two-component system
C 02035 Bacterial motility proteins
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins
C 04147 Exosome [BR:pld04147]
D PalTV_251 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PalTV_001 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PalTV_136 tufA; translation elongation factor Tu K02358 tuf; elongation factor Tu
D PalTV_294 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PalTV_249 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PalTV_075 lpd; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PalTV_216 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
C 02048 Prokaryotic defense system [BR:pld02048]
D PalTV_078 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pld03100]
D PalTV_017 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PalTV_247 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PalTV_192 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PalTV_209 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PalTV_257 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PalTV_236 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PalTV_164 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PalTV_246 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PalTV_304 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PalTV_176 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PalTV_149 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PalTV_175 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PalTV_208 tRNA-His K14226 tRNA-His; tRNA His
D PalTV_082 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PalTV_009 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PalTV_051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PalTV_245 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PalTV_241 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PalTV_008 tRNA-Met K14230 tRNA-Met; tRNA Met
D PalTV_235 tRNA-Met K14230 tRNA-Met; tRNA Met
D PalTV_274 tRNA-Met K14230 tRNA-Met; tRNA Met
D PalTV_303 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PalTV_210 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PalTV_200 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PalTV_193 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PalTV_199 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PalTV_172 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PalTV_148 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PalTV_295 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PalTV_305 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PalTV_147 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PalTV_150 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PalTV_166 tRNA-Val K14237 tRNA-Val; tRNA Val
D PalTV_243 tRNA-Val K14237 tRNA-Val; tRNA Val
D PalTV_083 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PalTV_081 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PalTV_080 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PalTV_222 Bacterial RNase P class A K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D PalTV_278 flavodoxin reductase family protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D PalTV_214 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D PalTV_041 cold shock protein K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D PalTV_306 smpB; tmRNA-binding protein K03664 smpB; SsrA-binding protein
D PalTV_053 nfuA; Fe-S biogenesis protein nfuA K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
C 99978 Cell growth
C 99993 Cell motility
C 99995 Signaling proteins
C 99992 Structural proteins
C 99994 Others
B
B 09194 Poorly characterized
C 99996 General function prediction only
D PalTV_182 sufB; Iron-regulated ABC transporter membrane component SufB K09014 sufB; Fe-S cluster assembly protein SufB
D PalTV_180 sufD; ABC-type transport system involved in Fe-S cluster assembly, permease component K09015 sufD; Fe-S cluster assembly protein SufD
D PalTV_054 sufE; SufE protein probably involved in Fe-S center assembly K02426 sufE; cysteine desulfuration protein SufE
C 99997 Function unknown
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 22, 2024