+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pantoea ananatis LMG 5342

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PANA5342_3096 ogt; methylated-DNA/protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PANA5342_3129 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PANA5342_1138 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PANA5342_0839 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PANA5342_2421 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PANA5342_3582 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PANA5342_0128 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PANA5342_3096 ogt; methylated-DNA/protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PANA5342_3129 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PANA5342_1459 alkB; alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E PANA5342_1138 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PANA5342_0667 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E PANA5342_3942 uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PANA5342_3097 ada; DNA methylation and regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PANA5342_0839 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PANA5342_0021 tag; DNA-3-methyladenine glycosylase I Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PANA5342_0133 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PANA5342_3121 nei; DNA-(apurinic or apyrimidinic site) lyase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E PANA5342_2421 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PANA5342_2071 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PANA5342_1520 nfo; Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E PANA5342_4202 nfi; deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E PANA5342_0902 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PANA5342_0115 yicF; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PANA5342_1289 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PANA5342_0096 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PANA5342_4149 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E PANA5342_3069 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E PANA5342_2854 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E PANA5342_2534 ydjQ; nucleotide excision repair endonuclease K05984 cho; excinuclease Cho [EC:3.1.25.-] E PANA5342_1490 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PANA5342_4258 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PANA5342_0096 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E PANA5342_0115 yicF; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PANA5342_1289 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PANA5342_4210 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PANA5342_4209 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PANA5342_0446 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PANA5342_0113 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PANA5342_2720 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PANA5342_0996 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PANA5342_0506 mutL1; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E PANA5342_0913 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E PANA5342_1632 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PANA5342_1194 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PANA5342_3323 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E PANA5342_1871 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] E PANA5342_1978 exoX; exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E PANA5342_3500 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PANA5342_0002 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PANA5342_3803 holC; DNA polymerase III, chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PANA5342_3161 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PANA5342_2736 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PANA5342_3477 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PANA5342_3269 dnaX; DNA polymerase III tau subunit DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E PANA5342_1979 holE1; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] E PANA5342_3937 holE3; DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E PANA5342_0115 yicF; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PANA5342_1289 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PANA5342_1490 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PANA5342_4258 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PANA5342_4012 ssb1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E PANA5342_4148 ssb3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E PANA5342_0379 dam1; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E PANA5342_1784 vsr; DNA mismatch endonuclease, patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PANA5342_0925 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PANA5342_0923 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PANA5342_0926 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PANA5342_1001 recA; recombinase A K03553 recA; recombination protein RecA E PANA5342_1963 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PANA5342_1964 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PANA5342_1962 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PANA5342_0185 priA; primosomal protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PANA5342_0522 priB; Primosomal replication protein N K02686 priB; primosomal replication protein N E PANA5342_3272 priC; primosomal replication protein N PriC K04067 priC; primosomal replication protein N'' E PANA5342_0023 dnaI; primosomal protein DnaI K02317 dnaT; DNA replication protein DnaT E PANA5342_1632 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PANA5342_3352 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PANA5342_3351 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PANA5342_1001 recA; recombinase A K03553 recA; recombination protein RecA E PANA5342_3697 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E PANA5342_0003 recF1; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E PANA5342_0110 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PANA5342_0902 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PANA5342_1152 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PANA5342_3267 recR; recombination protein RecR K06187 recR; recombination protein RecR E PANA5342_1135 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PANA5342_3355 rdgC; putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC E PANA5342_1963 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PANA5342_1964 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PANA5342_1962 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PANA5342_1499 yejH; ATP-dependent helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E PANA5342_3352 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PANA5342_3351 sbcD; nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E PANA5342_3785 yjgR; ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PANA5342_1446 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PANA5342_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PANA5342_2117 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PANA5342_4200 hupA; transcriptional regulator HU subunit alpha K05787 hupA; DNA-binding protein HU-alpha F PANA5342_3300 hupB; histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PANA5342_0902 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PANA5342_1152 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PANA5342_3267 recR; recombination protein RecR K06187 recR; recombination protein RecR F PANA5342_0115 yicF; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F PANA5342_1289 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PANA5342_0465 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PANA5342_2514 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F PANA5342_2924 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F PANA5342_1632 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PANA5342_4250 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PANA5342_4149 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F PANA5342_3069 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B F PANA5342_2992 hns3; DNA-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS F PANA5342_2079 hns1; histone-like nucleoid-structuring protein (H-NS) K03746 hns; DNA-binding protein H-NS F PANA5342_p10060 hns; histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PANA5342_3427 dinB; DNA polymerase IV DinB K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PANA5342_2438 umuC1; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D PANA5342_2813 umuC3; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D PANA5342_3939 umuC5; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D PANA5342_2439 umuD1; DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D PANA5342_3952 umuD5; UV protection protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PANA5342_1001 recA; recombinase A K03553 recA; recombination protein RecA D PANA5342_4165 lexA; transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D PANA5342_1135 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PANA5342_3621 polB; DNA polymerase II PolB K02336 polB; DNA polymerase II [EC:2.7.7.7] D PANA5342_4012 ssb1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PANA5342_4148 ssb3; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PANA5342_2774 dinI; DNA damage-inducible protein I, inhibits UmuD K12149 dinI; DNA-damage-inducible protein I D PANA5342_1002 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PANA5342_4283 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PANA5342_2880 helD; helicase IV HelD K03658 helD; DNA helicase IV [EC:5.6.2.4] D PANA5342_2035 yoaA; putative ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PANA5342_3027 dinG; ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D PANA5342_3582 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PANA5342_0128 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PANA5342_1045 nrdE; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PANA5342_1443 nrdA; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PANA5342_1442 nrdB; ribonucleoside-diphosphate reductase 1 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PANA5342_1044 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024