+D GENES KO #

  KEGG Orthology (KO) - Planctopirus limnophila

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:plm00010] D Plim_2404 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_1388 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_3994 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Plim_0062 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2613 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2681 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2153 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Plim_2049 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Plim_0647 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Plim_1252 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Plim_0773 phosphonopyruvate decarboxylase-related protein K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Plim_0308 proposed homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Plim_2603 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Plim_3274 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Plim_2420 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Plim_3532 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Plim_3533 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_1746 Lactate/malate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Plim_1203 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Plim_2975 Alcohol dehydrogenase GroES domain protein K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Plim_4118 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Plim_3008 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Plim_0702 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Plim_2884 Haloacid dehalogenase domain protein hydrolase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D Plim_1409 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Plim_3603 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Plim_0758 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D Plim_2259 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:plm00020] D Plim_0895 2-methylcitrate synthase/citrate synthase II K01647 CS; citrate synthase [EC:2.3.3.1] D Plim_2285 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Plim_0079 Isocitrate dehydrogenase (NADP(+)) K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D Plim_0622 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Plim_0621 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_2405 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Plim_2406 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Plim_2452 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Plim_2453 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Plim_2451 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Plim_0853 fumarate lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Plim_1133 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Plim_2259 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Plim_3532 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Plim_3533 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:plm00030] D Plim_3994 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Plim_1200 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Plim_3679 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D Plim_2297 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Plim_0648 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Plim_0338 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Plim_0339 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Plim_3832 Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Plim_2593 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Plim_2692 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Plim_2334 PfkB domain protein K00852 rbsK; ribokinase [EC:2.7.1.15] D Plim_1409 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Plim_3603 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Plim_4145 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Plim_0451 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Plim_2059 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Plim_3181 short-chain dehydrogenase/reductase SDR K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47] D Plim_4017 Alcohol dehydrogenase zinc-binding domain protein K22969 gdh; glucose 1-dehydrogenase [EC:1.1.1.47] D Plim_1972 heme-binding protein K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2] D Plim_3928 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D Plim_2162 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Plim_2098 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D Plim_3346 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D Plim_1831 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Plim_2153 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Plim_0062 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2613 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2681 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:plm00040] D Plim_2217 short-chain dehydrogenase/reductase SDR K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D Plim_2160 amidohydrolase 2 K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D Plim_1355 hypothetical protein K21619 uxaE; tagaturonate epimerase [EC:5.1.2.7] D Plim_3818 oxidoreductase domain protein K18106 GAAA; D-galacturonate reductase [EC:1.1.1.-] D Plim_3736 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Plim_1208 Xylose isomerase domain protein TIM barrel K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D Plim_0648 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Plim_0722 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Plim_1287 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D Plim_3420 carbohydrate kinase FGGY K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D Plim_3771 dehydratase, YjhG/YagF family K22396 yjhG; xylonate dehydratase [EC:4.2.1.82] D Plim_2548 Dihydrodipicolinate synthase K22397 yjhH; 2-dehydro-3-deoxy-D-pentonate aldolase [EC:4.1.2.28] D Plim_2320 fumarylacetoacetate (FAA) hydrolase K14259 kdaD; 2-dehydro-3-deoxy-D-arabinonate dehydratase [EC:4.2.1.141] D Plim_1474 Aldehyde Dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Plim_1747 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:plm00051] D Plim_1998 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Plim_1482 Phosphomannose isomerase-like protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Plim_3476 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Plim_1316 Phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Plim_3603 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Plim_2939 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Plim_3411 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Plim_1041 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Plim_1747 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D Plim_1189 Mandelate racemase/muconate lactonizing protein K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68] D Plim_3420 carbohydrate kinase FGGY K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D Plim_0062 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2613 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2681 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_1287 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D Plim_2153 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Plim_2049 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Plim_2593 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Plim_2692 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00052 Galactose metabolism [PATH:plm00052] D Plim_3008 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Plim_0702 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Plim_1971 UDP-glucose--hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Plim_1343 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Plim_1962 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Plim_1409 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Plim_3603 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Plim_2404 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_1388 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_0062 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2613 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2681 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00053 Ascorbate and aldarate metabolism [PATH:plm00053] D Plim_3736 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Plim_3928 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D Plim_2162 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Plim_3735 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Plim_1208 Xylose isomerase domain protein TIM barrel K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Plim_2320 fumarylacetoacetate (FAA) hydrolase K14259 kdaD; 2-dehydro-3-deoxy-D-arabinonate dehydratase [EC:4.2.1.141] D Plim_1474 Aldehyde Dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00500 Starch and sucrose metabolism [PATH:plm00500] D Plim_3683 HAD-superfamily hydrolase, subfamily IIB K00696 E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14] D Plim_3684 alpha amylase catalytic region K05341 E2.4.1.4; amylosucrase [EC:2.4.1.4] D Plim_1974 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Plim_1691 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Plim_1134 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D Plim_0413 glycoside hydrolase family 13 domain protein K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Plim_2229 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Plim_3493 alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Plim_1410 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D Plim_1919 4-alpha-glucanotransferase K22451 jgt; 4-alpha-glucanotransferase [EC:2.4.1.25] D Plim_2700 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D Plim_3980 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D Plim_1409 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Plim_3603 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Plim_2404 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_1388 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_3994 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Plim_1998 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:plm00520] D Plim_2913 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Plim_2730 glucosamine/galactosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D Plim_1998 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Plim_1342 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Plim_2612 sugar isomerase (SIS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Plim_3969 GCN5-related N-acetyltransferase K00621 GNPNAT1; glucosamine-phosphate N-acetyltransferase [EC:2.3.1.4] D Plim_3650 Glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Plim_4027 UTP--glucose-1-phosphate uridylyltransferase K00972 UAP1; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase [EC:2.7.7.23 2.7.7.83] D Plim_1195 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Plim_0011 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Plim_4103 nucleotide sugar dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D Plim_2198 oxidoreductase domain protein K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D Plim_3791 NAD-dependent epimerase/dehydratase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D Plim_2404 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_1388 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_0758 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D Plim_1409 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Plim_3603 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Plim_3736 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Plim_1971 UDP-glucose--hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Plim_1343 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Plim_1962 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Plim_3735 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Plim_3994 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Plim_1482 Phosphomannose isomerase-like protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Plim_3476 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Plim_1316 Phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Plim_2939 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Plim_3411 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Plim_1041 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Plim_1974 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Plim_1691 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:plm00620] D Plim_4118 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Plim_3532 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Plim_3533 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_2975 Alcohol dehydrogenase GroES domain protein K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183] D Plim_1754 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Plim_1757 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Plim_3274 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Plim_2174 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Plim_0064 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Plim_0063 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Plim_0650 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Plim_1746 Lactate/malate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Plim_1203 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Plim_3935 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Plim_1183 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Plim_2946 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Plim_1786 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Plim_1133 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Plim_0853 fumarate lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Plim_2699 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Plim_2259 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Plim_2420 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Plim_0093 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Plim_2070 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Plim_1227 pyruvate carboxyltransferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:plm00630] D Plim_4118 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Plim_1133 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Plim_0895 2-methylcitrate synthase/citrate synthase II K01647 CS; citrate synthase [EC:2.3.3.1] D Plim_2285 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Plim_2684 FAD linked oxidase domain protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D Plim_4100 FAD linked oxidase domain protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D Plim_3498 protein of unknown function DUF224 cysteine-rich region domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D Plim_1720 Haloacid dehalogenase domain protein hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Plim_1387 Haloacid dehalogenase domain protein hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Plim_0873 Haloacid dehalogenase domain protein hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Plim_0683 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_1921 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_2187 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Plim_2595 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Plim_2596 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Plim_2455 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_3311 glycine cleavage H-protein K02437 gcvH; glycine cleavage system H protein D Plim_2594 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Plim_1831 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Plim_2059 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Plim_3053 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Plim_0191 formyl transferase domain protein K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:plm00640] D Plim_4118 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Plim_1754 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Plim_1757 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_2174 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Plim_0064 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Plim_0063 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Plim_0650 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Plim_2637 aminotransferase class-III K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Plim_2406 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Plim_2405 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Plim_2962 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D Plim_1746 Lactate/malate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Plim_1203 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] C 00650 Butanoate metabolism [PATH:plm00650] D Plim_1498 Phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19] D Plim_2452 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Plim_2453 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Plim_2451 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Plim_2637 aminotransferase class-III K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Plim_1406 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Plim_1192 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:plm00660] D Plim_1406 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Plim_1192 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Plim_2406 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Plim_2405 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Plim_0323 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Plim_0321 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Plim_3900 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:plm00562] D Plim_3418 3'(2'),5'-bisphosphate nucleotidase K15422 SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57] D Plim_1820 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Plim_1797 Inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D Plim_3702 Xylose isomerase domain protein TIM barrel K06606 iolI; 2-keto-myo-inositol isomerase [EC:5.3.99.11] D Plim_2049 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:plm00190] D Plim_1331 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D Plim_3856 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D Plim_2388 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Plim_3857 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Plim_1330 NADH (or F420H2) dehydrogenase, subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D Plim_3858 NADH dehydrogenase (ubiquinone) 30 kDa subunit K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D Plim_1329 NADH dehydrogenase (quinone) K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D Plim_3859 NADH dehydrogenase (quinone) K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D Plim_3860 NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Plim_3862 NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D Plim_3863 ferredoxin K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D Plim_0266 NADH dehydrogenase (quinone) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D Plim_3864 NADH dehydrogenase (quinone) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D Plim_1333 4Fe-4S ferredoxin iron-sulfur binding domain protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D Plim_3865 NADH-quinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D Plim_3866 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D Plim_0267 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D Plim_3867 NADH-ubiquinone oxidoreductase chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D Plim_0268 NADH-ubiquinone oxidoreductase chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D Plim_0269 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D Plim_3868 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D Plim_0270 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D Plim_3869 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D Plim_0271 NADH/Ubiquinone/plastoquinone (complex I) K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D Plim_3870 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D Plim_0924 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Plim_2452 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Plim_2453 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Plim_2451 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Plim_0424 Cytochrome b/b6 domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Plim_0423 Rieske (2Fe-2S) domain protein K03886 qcrA; quinol---cytochrome c reductase iron-sulfur subunit, bacillus type [EC:7.1.1.8] D Plim_2955 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Plim_3992 caa(3)-type oxidase, subunit IV K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D Plim_2953 caa(3)-type oxidase, subunit IV K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D Plim_3991 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Plim_3993 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Plim_2954 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Plim_3990 cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Plim_2957 Cytochrome-c oxidase K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Plim_3989 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Plim_2958 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Plim_2956 Uncharacterized protein required for cytochrome oxidase assembly-like protein K02259 COX15; heme a synthase [EC:1.17.99.9] D Plim_2688 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Plim_2687 cytochrome bd ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Plim_0174 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Plim_0176 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Plim_0175 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Plim_0173 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Plim_0177 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Plim_0170 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Plim_0172 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Plim_0171 H+transporting two-sector ATPase C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Plim_3667 Inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D Plim_2402 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:plm00710] D Plim_1252 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Plim_0647 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Plim_2153 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Plim_0338 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Plim_0339 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Plim_2593 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Plim_2692 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Plim_2049 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Plim_0648 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Plim_3832 Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Plim_2699 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Plim_2259 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Plim_2420 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Plim_1133 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:plm00720] D Plim_2420 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Plim_2699 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Plim_1133 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Plim_0853 fumarate lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Plim_2452 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Plim_2453 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Plim_2451 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Plim_2405 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Plim_2406 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Plim_2285 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Plim_2174 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Plim_0064 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Plim_0063 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Plim_0650 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Plim_3436 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Plim_3996 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Plim_1757 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Plim_1754 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Plim_4118 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:plm00680] D Plim_3053 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Plim_2187 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Plim_1831 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Plim_2603 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Plim_2699 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Plim_1133 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Plim_2153 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Plim_0062 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2613 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_2681 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Plim_1687 formylmethanofuran dehydrogenase subunit A K00200 fwdA; formylmethanofuran dehydrogenase subunit A [EC:1.2.7.12] D Plim_2299 Formylmethanofuran dehydrogenase subunit B-like protein K00201 fwdB; formylmethanofuran dehydrogenase subunit B [EC:1.2.7.12] D Plim_1421 glutamate synthase alpha subunit domain protein K00202 fwdC; formylmethanofuran dehydrogenase subunit C [EC:1.2.7.12] D Plim_0767 formylmethanofuran/tetrahydromethanopterin N-formyltransferase K00672 ftr; formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101] D Plim_2586 methenyltetrahydromethanopterin cyclohydrolase K01499 mch; methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] D Plim_3754 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K00300 mtdA; methylenetetrahydrofolate/methylenetetrahydromethanopterin dehydrogenase (NADP+) [EC:1.5.1.5 1.5.1.-] D Plim_1285 formaldehyde-activating enzyme K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147] D Plim_3519 formaldehyde-activating enzyme K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147] D Plim_1754 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Plim_4118 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Plim_0773 phosphonopyruvate decarboxylase-related protein K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Plim_0308 proposed homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Plim_1680 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Plim_2827 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Plim_1744 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Plim_1320 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] D Plim_0283 protein of unknown function DUF201 K06914 mfnD; tyramine---L-glutamate ligase [EC:6.3.4.24] D Plim_1240 conserved hypothetical protein K09733 mfnB; (5-formylfuran-3-yl)methyl phosphate synthase [EC:4.2.3.153] D Plim_2332 Uncharacterized aspartokinase uridylate kinase-like protein K07144 mfnE; 5-(aminomethyl)-3-furanmethanol phosphate kinase [EC:2.7.4.31] D Plim_0257 H4MPT-linked C1 transfer pathway protein K07072 mfnF; (4-(4-[2-(gamma-L-glutamylamino)ethyl]phenoxymethyl)furan-2-yl)methanamine synthase [EC:2.5.1.131] C 00910 Nitrogen metabolism [PATH:plm00910] D Plim_3052 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Plim_3055 precorrin-3B synthase K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1] D Plim_0683 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_1921 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_2694 Glutamate synthase (NADH) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Plim_2693 glutamate synthase, NADH/NADPH, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Plim_2571 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D Plim_3696 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D Plim_2716 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:plm00920] D Plim_3186 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Plim_3185 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Plim_3184 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Plim_3183 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Plim_1772 Sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Plim_0313 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Plim_2584 inositol monophosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Plim_3418 3'(2'),5'-bisphosphate nucleotidase K15422 SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57] D Plim_0422 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D Plim_0369 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Plim_3931 Sulfite oxidase K00387 SUOX; sulfite oxidase [EC:1.8.3.1] D Plim_3056 FAD-binding domain protein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D Plim_2758 Sulfite reductase (NADPH) K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1] D Plim_2817 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Plim_1307 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Plim_3256 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Plim_2776 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Plim_2737 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Plim_1427 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D Plim_0611 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Plim_3306 Cystathionine gamma-lyase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:plm00061] D Plim_2174 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Plim_0064 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Plim_0063 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Plim_0650 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Plim_2565 acyl carrier protein K02078 acpP; acyl carrier protein D Plim_3122 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D Plim_2566 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Plim_2221 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Plim_3120 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_2564 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_2562 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_3658 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_1694 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_3965 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_1144 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_3123 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_2034 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_0880 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_3297 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Plim_3121 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Plim_3124 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Plim_3893 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Plim_1674 short-chain dehydrogenase/reductase SDR K10780 fabL; enoyl-[acyl-carrier protein] reductase III [EC:1.3.1.104] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:plm00071] D Plim_2369 AMP-dependent synthetase and ligase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:plm00561] D Plim_1831 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Plim_2002 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Plim_2567 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Plim_0829 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Plim_3130 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Plim_2911 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] C 00564 Glycerophospholipid metabolism [PATH:plm00564] D Plim_1353 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Plim_0829 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Plim_3130 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Plim_2911 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Plim_3666 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Plim_2369 AMP-dependent synthetase and ligase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D Plim_1783 Ethanolamine ammonia-lyase K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D Plim_1784 Ethanolamine ammonia-lyase K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D Plim_3315 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Plim_0720 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Plim_1537 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Plim_0446 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D Plim_0043 conserved hypothetical protein K13622 btaA; S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase D Plim_4002 Methyltransferase type 11 K13623 btaB; S-adenosylmethionine-diacylgycerolhomoserine-N-methlytransferase D Plim_1578 3-dehydroquinate synthase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism [PATH:plm00600] D Plim_0354 sulfatase K01134 ARSA; arylsulfatase A [EC:3.1.6.8] D Plim_1879 sulfatase K01134 ARSA; arylsulfatase A [EC:3.1.6.8] D Plim_2738 sulfatase K01134 ARSA; arylsulfatase A [EC:3.1.6.8] D Plim_1520 sulfatase K01134 ARSA; arylsulfatase A [EC:3.1.6.8] D Plim_3913 sulfatase K01134 ARSA; arylsulfatase A [EC:3.1.6.8] D Plim_2856 Neuraminidase (sialidase)-like protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] D Plim_3447 glycosyl hydrolase BNR repeat-containing protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:plm00230] D Plim_1409 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Plim_3603 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Plim_4145 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Plim_0451 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Plim_1264 phosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Plim_1777 phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Plim_1759 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Plim_3854 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Plim_1829 phosphoribosylformylglycinamidine synthase II K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3] D Plim_0738 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Plim_1324 phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D Plim_1323 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Plim_3848 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Plim_3831 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Plim_1423 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Plim_3653 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Plim_1187 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Plim_2216 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D Plim_2918 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Plim_3508 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Plim_2031 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Plim_2323 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Plim_3496 NUDIX hydrolase K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17] D Plim_0163 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Plim_2052 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Plim_3177 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Plim_2137 hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D Plim_2403 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Plim_2265 adenylyl cyclase class-3/4/guanylyl cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D Plim_2432 adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D Plim_2072 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Plim_2965 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Plim_0733 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Plim_1357 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Plim_1563 metallophosphoesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D Plim_0313 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Plim_1772 Sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:plm00240] D Plim_0334 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Plim_2032 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Plim_2268 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Plim_0292 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Plim_2269 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Plim_0772 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Plim_4143 oxidoreductase FAD/NAD(P)-binding domain protein K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D Plim_1455 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Plim_2904 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Plim_3192 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Plim_2031 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Plim_1357 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Plim_0198 Maf family protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Plim_3496 NUDIX hydrolase K01518 NUDT2; bis(5'-nucleosidyl)-tetraphosphatase [EC:3.6.1.17] D Plim_1716 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Plim_0331 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Plim_1187 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Plim_0157 HAD-superfamily hydrolase, subfamily IA, variant 1 K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D Plim_0612 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Plim_3177 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Plim_2137 hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D Plim_2209 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Plim_0014 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:plm00250] D Plim_0135 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Plim_1270 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Plim_1012 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Plim_3421 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Plim_2615 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Plim_3804 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Plim_1395 fumarate lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D Plim_4163 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Plim_1940 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Plim_2072 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Plim_3831 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Plim_2268 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Plim_2637 aminotransferase class-III K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Plim_2694 Glutamate synthase (NADH) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Plim_2693 glutamate synthase, NADH/NADPH, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Plim_4195 Aldehyde Dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Plim_1670 Aldehyde Dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Plim_0683 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_1921 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_0334 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Plim_2032 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Plim_1319 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Plim_1503 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Plim_3854 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Plim_1342 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Plim_2612 sugar isomerase (SIS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Plim_1264 phosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:plm00260] D Plim_1425 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Plim_1776 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Plim_2809 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Plim_2963 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Plim_2168 Threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Plim_2187 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Plim_1831 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Plim_0773 phosphonopyruvate decarboxylase-related protein K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Plim_0308 proposed homoserine kinase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Plim_1680 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Plim_2827 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Plim_1744 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Plim_2077 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Plim_2076 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D Plim_2381 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Plim_2595 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Plim_2596 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Plim_2455 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_3311 glycine cleavage H-protein K02437 gcvH; glycine cleavage system H protein D Plim_2594 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Plim_0116 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Plim_1722 Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Plim_3190 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Plim_3191 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:plm00270] D Plim_1307 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Plim_3256 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Plim_2776 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Plim_2737 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Plim_2467 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Plim_2224 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Plim_3746 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Plim_2319 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Plim_1743 purine or other phosphorylase family 1 K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Plim_1381 translation initiation factor, aIF-2BI family K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D Plim_3834 putative GAF sensor protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D Plim_3615 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Plim_1425 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Plim_1776 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Plim_2809 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Plim_1427 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D Plim_0611 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Plim_4098 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Plim_3306 Cystathionine gamma-lyase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D Plim_3544 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Plim_1939 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Plim_0135 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Plim_2817 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Plim_1746 Lactate/malate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Plim_1203 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Plim_1133 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Plim_0116 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Plim_1680 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Plim_2827 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Plim_1744 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:plm00280] D Plim_3544 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Plim_1939 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_1371 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Plim_2637 aminotransferase class-III K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:plm00290] D Plim_1722 Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Plim_0323 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Plim_0321 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Plim_3900 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Plim_1406 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Plim_1192 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Plim_1193 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Plim_3236 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Plim_3544 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Plim_1939 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Plim_1678 aminotransferase class I and II K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D Plim_0093 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Plim_2070 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Plim_1227 pyruvate carboxyltransferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:plm00300] D Plim_2809 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Plim_1425 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Plim_1776 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Plim_1370 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Plim_1676 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Plim_3278 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Plim_2767 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Plim_0185 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Plim_3995 aminotransferase class I and II K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Plim_1775 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Plim_0681 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Plim_0680 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:plm00310] D Plim_0621 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_2637 aminotransferase class-III K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Plim_3423 FAD dependent oxidoreductase K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:plm00220] D Plim_2766 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Plim_4163 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Plim_1940 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Plim_1319 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Plim_1503 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Plim_3854 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Plim_0683 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_1921 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_0334 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Plim_2032 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Plim_0135 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Plim_0382 GCN5-related N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D Plim_1589 arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D Plim_2768 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Plim_2484 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Plim_2767 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Plim_4229 peptidase M20 K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:plm00330] D Plim_3789 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Plim_0290 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Plim_3803 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Plim_2319 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Plim_3746 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Plim_2381 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Plim_2835 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Plim_4195 Aldehyde Dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Plim_1670 Aldehyde Dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Plim_1538 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Plim_2499 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Plim_0135 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Plim_2539 Mandelate racemase/muconate lactonizing protein K21624 c3lhypd; cis-L-3-hydroxyproline dehydratase [EC:4.2.1.171] C 00340 Histidine metabolism [PATH:plm00340] D Plim_2331 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Plim_1557 phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D Plim_2330 Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D Plim_2080 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Plim_2081 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Plim_2829 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Plim_3413 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Plim_3414 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Plim_2305 inositol monophosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15] D Plim_2170 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Plim_2381 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] C 00350 Tyrosine metabolism [PATH:plm00350] D Plim_0135 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Plim_3414 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Plim_2381 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Plim_3155 2-dehydro-3-deoxyglucarate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] C 00360 Phenylalanine metabolism [PATH:plm00360] D Plim_2381 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Plim_1303 Phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D Plim_0135 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Plim_3414 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Plim_3032 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Plim_2712 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Plim_1663 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00380 Tryptophan metabolism [PATH:plm00380] D Plim_0621 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_2381 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Plim_1663 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:plm00400] D Plim_0134 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Plim_0047 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Plim_1543 3-dehydroquinate dehydratase-like protein K13832 aroDE; 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] D Plim_1839 3-dehydroquinate dehydratase, type I K13832 aroDE; 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] D Plim_1840 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Plim_1108 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Plim_1702 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Plim_0761 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Plim_0052 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Plim_0847 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Plim_4032 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Plim_2195 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Plim_3190 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Plim_3191 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Plim_2048 Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D Plim_2024 chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5] D Plim_1828 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Plim_0135 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Plim_3414 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:plm00410] D Plim_4106 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D Plim_2637 aminotransferase class-III K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Plim_2254 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] C 00430 Taurine and hypotaurine metabolism [PATH:plm00430] D Plim_3208 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Plim_3804 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Plim_1757 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Plim_1754 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:plm00440] D Plim_3627 phosphonoacetaldehyde hydrolase K05306 phnX; phosphonoacetaldehyde hydrolase [EC:3.11.1.1] D Plim_3677 Aldehyde Dehydrogenase K00206 phnY; phosphonoacetaldehyde dehydrogenase [EC:1.2.1.-] D Plim_2290 beta-lactamase domain protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:plm00450] D Plim_0611 Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Plim_2467 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Plim_1322 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Plim_1633 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Plim_1772 Sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Plim_1132 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:plm00460] D Plim_3208 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Plim_1012 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Plim_2187 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:plm00470] D Plim_0009 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Plim_1319 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Plim_1503 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Plim_3854 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Plim_1571 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Plim_2715 Mandelate racemase/muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D Plim_0185 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Plim_1775 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Plim_2713 4-hydroxyproline epimerase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D Plim_2714 dihydrodipicolinate synthetase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D Plim_1474 Aldehyde Dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Plim_3032 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Plim_2712 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:plm00480] D Plim_3208 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Plim_2569 5-oxoprolinase (ATP-hydrolyzing) K01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9] D Plim_3886 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Plim_2297 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Plim_1200 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Plim_2909 Peroxiredoxin K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Plim_3803 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D Plim_2319 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis [PATH:plm00515] D Plim_3397 4-amino-4-deoxy-L-arabinose transferase-like glycosyltransferase of PMT family K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] C 00514 Other types of O-glycan biosynthesis [PATH:plm00514] D Plim_3397 4-amino-4-deoxy-L-arabinose transferase-like glycosyltransferase of PMT family K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:plm00511] D Plim_2856 Neuraminidase (sialidase)-like protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] D Plim_3447 glycosyl hydrolase BNR repeat-containing protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] C 00540 Lipopolysaccharide biosynthesis [PATH:plm00540] D Plim_0918 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Plim_0919 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Plim_2360 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Plim_2359 protein of unknown function DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Plim_0943 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Plim_0158 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Plim_3740 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Plim_4193 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Plim_1717 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Plim_2366 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Plim_1862 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Plim_1528 sugar isomerase (SIS) K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Plim_0898 cytidyltransferase-related domain protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Plim_1964 glycosyl transferase family 9 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D Plim_0899 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Plim_0900 glycosyl transferase group 1 K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] C 00542 O-Antigen repeat unit biosynthesis [PATH:plm00542] D Plim_2437 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:plm00541] D Plim_1343 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Plim_1962 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Plim_3736 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Plim_3735 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Plim_3248 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Plim_3582 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Plim_1527 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Plim_3292 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Plim_1482 Phosphomannose isomerase-like protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D Plim_3476 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Plim_1316 Phosphoglucosamine mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Plim_2939 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Plim_3411 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Plim_1041 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Plim_3650 Glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Plim_4103 nucleotide sugar dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D Plim_2198 oxidoreductase domain protein K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] C 00550 Peptidoglycan biosynthesis [PATH:plm00550] D Plim_1195 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Plim_0011 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Plim_0012 Mur ligase middle domain protein K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Plim_1571 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Plim_0681 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Plim_0009 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Plim_0680 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Plim_0265 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Plim_1823 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Plim_1131 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Plim_0205 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Plim_4064 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Plim_1789 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:plm00552] D Plim_1823 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Plim_2437 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:plm00543] D Plim_2437 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Plim_1307 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:plm00730] D Plim_1742 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Plim_3794 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Plim_2172 FAD dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19] D Plim_2440 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Plim_3633 thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D Plim_0604 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Plim_1244 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Plim_0549 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Plim_3159 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Plim_2965 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Plim_0733 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:plm00740] D Plim_2277 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Plim_3461 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Plim_3600 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Plim_2602 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Plim_0714 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Plim_2148 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:plm00750] D Plim_4023 putative pyridoxamine-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D Plim_1744 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Plim_1334 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Plim_2318 Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D Plim_2963 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:plm00760] D Plim_1270 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Plim_1159 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Plim_0194 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Plim_2216 purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D Plim_1187 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Plim_0081 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Plim_1357 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Plim_3277 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D Plim_3948 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Plim_1515 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Plim_1521 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Plim_3567 pyridine nucleotide-disulfide oxidoreductase dimerization region K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1] C 00770 Pantothenate and CoA biosynthesis [PATH:plm00770] D Plim_1406 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Plim_1192 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Plim_1193 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Plim_3236 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Plim_1631 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Plim_2980 Ketopantoate reductase ApbA/PanE domain protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Plim_2254 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Plim_3950 transcriptional activator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Plim_1357 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Plim_1290 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Plim_3598 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Plim_1572 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Plim_2984 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D Plim_1673 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D Plim_3544 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Plim_1939 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Plim_4106 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:plm00780] D Plim_3120 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_2564 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_2562 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_3658 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_1694 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_3965 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_1144 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_3123 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_2034 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_0880 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_3297 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Plim_3121 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Plim_3124 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Plim_3893 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Plim_2540 BioH protein, putative K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D Plim_1470 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Plim_1143 aminotransferase class-III K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Plim_0526 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D Plim_1928 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Plim_1586 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:plm00785] D Plim_3383 Lipoate-protein ligase B-like protein K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Plim_2597 biotin/lipoate A/B protein ligase K23734 lipM; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Plim_3382 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Plim_2611 biotin/lipoate A/B protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_3532 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Plim_3533 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Plim_0622 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Plim_0621 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Plim_2595 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Plim_2596 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Plim_2455 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Plim_3311 glycine cleavage H-protein K02437 gcvH; glycine cleavage system H protein D Plim_2594 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:plm00790] D Plim_0748 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Plim_3159 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Plim_1695 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Plim_3028 Phosphodiesterase/alkaline phosphatase D-like protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Plim_0874 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Plim_1925 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Plim_0591 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Plim_2277 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Plim_2037 glutamine amidotransferase of anthranilate synthase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D Plim_2036 Anthranilate synthase K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D Plim_4125 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Plim_2408 conserved hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Plim_4232 transcriptional coactivator/pterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Plim_1577 short-chain dehydrogenase/reductase SDR K03793 PTR1; pteridine reductase [EC:1.5.1.33] D Plim_1943 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Plim_1942 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Plim_2723 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Plim_2423 beta-ribofuranosylaminobenzene 5'-phosphate synthase family K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54] D Plim_3318 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Plim_0132 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Plim_0864 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Plim_1982 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Plim_3362 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Plim_1920 Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:plm00670] D Plim_3436 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Plim_3754 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K00300 mtdA; methylenetetrahydrofolate/methylenetetrahydromethanopterin dehydrogenase (NADP+) [EC:1.5.1.5 1.5.1.-] D Plim_2187 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Plim_1759 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Plim_1423 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Plim_2729 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Plim_2455 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Plim_2467 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Plim_0014 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Plim_0191 formyl transferase domain protein K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Plim_3996 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Plim_1246 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:plm00860] D Plim_2659 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Plim_3343 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Plim_1296 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Plim_2747 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Plim_1546 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Plim_3202 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Plim_2288 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D Plim_2287 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D Plim_2286 protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D Plim_1905 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Plim_3790 Chlorite dismutase K00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5] D Plim_1555 uroporphyrin-III C-methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D Plim_2903 cobalamin (vitamin B12) biosynthesis CbiX protein K03794 sirB; sirohydrochlorin ferrochelatase [EC:4.99.1.4] D Plim_2955 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Plim_2956 Uncharacterized protein required for cytochrome oxidase assembly-like protein K02259 COX15; heme a synthase [EC:1.17.99.9] D Plim_3905 ATP/cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Plim_1024 cobalamin-5-phosphate synthase CobS K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Plim_1023 nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D Plim_1164 magnesium protoporphyrin chelatase, putative K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1] D Plim_3758 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:plm00130] D Plim_3757 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Plim_4242 UbiD family decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Plim_2150 3-polyprenyl-4-hydroxybenzoate decarboxylase-like decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Plim_2148 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Plim_2149 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Plim_2810 protein of unknown function DUF178 K11782 mqnA; chorismate dehydratase [EC:4.2.1.151] D Plim_0097 Radical SAM domain protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120] D Plim_3188 amidohydrolase K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40] D Plim_2811 Radical SAM domain protein K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1] D Plim_1988 protein of unknown function DUF191 K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29] D Plim_4089 flavoprotein WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:plm00900] D Plim_2440 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Plim_3364 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Plim_0764 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Plim_2769 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Plim_2447 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D Plim_0610 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Plim_3455 hydroxymethylbutenyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Plim_2148 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Plim_3117 NUDIX hydrolase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D Plim_2441 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Plim_2915 protein of unknown function DUF116 K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Plim_0149 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Plim_0265 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:plm00909] D Plim_0903 Squalene cyclase-like protein K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129] D Plim_1904 squalene-hopene cyclase K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129] D Plim_4048 cycloartenol synthase-like protein K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129] C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:plm00906] D Plim_2244 Phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D Plim_2742 phytoene desaturase K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31] D Plim_2740 phytoene desaturase K10210 crtP; diapolycopene oxygenase [EC:1.14.99.44] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation [PATH:plm00907] D Plim_2975 Alcohol dehydrogenase GroES domain protein K12957 ahr; alcohol/geraniol dehydrogenase (NADP+) [EC:1.1.1.2 1.1.1.183] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Plim_0338 Transketolase central region K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Plim_0339 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:plm00523] D Plim_3248 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Plim_3582 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Plim_1527 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Plim_3292 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D Plim_3582 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D Plim_1607 aminotransferase class V K04127 cefD; isopenicillin-N epimerase [EC:5.1.1.17] C 00332 Carbapenem biosynthesis [PATH:plm00332] D Plim_1538 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Plim_2499 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:plm00261] D Plim_1772 Sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Plim_1425 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Plim_1776 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Plim_1370 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Plim_1676 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Plim_3278 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:plm00521] D Plim_2404 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_1388 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_1409 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Plim_3603 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Plim_1797 Inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D Plim_1820 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Plim_3248 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Plim_3582 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Plim_1527 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Plim_3292 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Plim_2404 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Plim_1388 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:plm00525] D Plim_3248 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Plim_3582 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:plm00401] D Plim_1828 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Plim_0135 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Plim_3414 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Plim_0761 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Plim_0052 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Plim_2566 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Plim_3965 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_1144 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_3123 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_2034 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_0880 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_3893 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Plim_2565 acyl carrier protein K02078 acpP; acyl carrier protein D Plim_3122 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:plm00999] D Plim_2224 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Plim_1543 3-dehydroquinate dehydratase-like protein K13832 aroDE; 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] D Plim_1839 3-dehydroquinate dehydratase, type I K13832 aroDE; 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D Plim_0804 intradiol ring-cleavage dioxygenase K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00627 Aminobenzoate degradation D Plim_2148 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation [PATH:plm00364] D Plim_3842 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:plm00625] D Plim_1868 Retinal dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:plm00361] D Plim_3842 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:plm00623] D Plim_3842 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation D Plim_3928 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D Plim_2162 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation D Plim_0804 intradiol ring-cleavage dioxygenase K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:plm03020] D Plim_0443 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Plim_0472 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Plim_0499 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Plim_0602 RNA polymerase alpha subunit domain protein K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Plim_2053 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Plim_2215 aspartic acid-rich protein aspolin2-1-like protein K03048 rpoE; DNA-directed RNA polymerase subunit delta C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:plm03010] D Plim_1620 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Plim_3194 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Plim_0483 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Plim_0732 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Plim_0494 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Plim_2627 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Plim_0474 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Plim_0491 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Plim_2878 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Plim_0476 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Plim_0498 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Plim_0473 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Plim_0497 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Plim_0490 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Plim_0379 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Plim_0180 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Plim_0486 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Plim_0863 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Plim_0481 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Plim_0856 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Plim_0852 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Plim_0440 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Plim_0480 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Plim_0477 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Plim_0478 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Plim_0489 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Plim_0492 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Plim_0442 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Plim_2625 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Plim_0441 Ribosomal protein L10-like protein K02864 RP-L10; large subunit ribosomal protein L10 D Plim_0439 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Plim_2877 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Plim_0487 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Plim_0495 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Plim_0484 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Plim_0500 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Plim_0493 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Plim_0178 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Plim_2503 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Plim_0356 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Plim_0482 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Plim_0479 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Plim_0488 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Plim_2629 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D Plim_0238 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Plim_2279 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Plim_0485 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Plim_0923 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Plim_2568 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Plim_0436 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Plim_2502 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Plim_R0024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Plim_R0046 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Plim_R0055 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Plim_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:plm00970] D Plim_R0056 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Plim_R0068 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Plim_R0058 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Plim_R0034 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0048 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0013 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0041 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0043 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0003 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Plim_R0005 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Plim_R0016 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Plim_R0050 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Plim_R0027 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Plim_R0060 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Plim_R0018 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Plim_R0006 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Plim_R0009 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Plim_R0053 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Plim_R0063 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Plim_R0020 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Plim_R0052 tRNA-His K14226 tRNA-His; tRNA His D Plim_R0022 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Plim_R0057 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Plim_R0051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0031 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0032 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0014 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0037 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0047 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0015 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0035 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Plim_R0039 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Plim_R0002 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Plim_R0023 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Plim_R0021 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Plim_R0069 tRNA-Met K14230 tRNA-Met; tRNA Met D Plim_R0042 tRNA-Met K14230 tRNA-Met; tRNA Met D Plim_R0065 tRNA-Met K14230 tRNA-Met; tRNA Met D Plim_R0028 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Plim_R0067 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Plim_R0045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Plim_R0044 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Plim_R0026 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Plim_R0059 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Plim_R0062 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Plim_R0066 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Plim_R0010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Plim_R0012 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Plim_R0007 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Plim_R0011 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Plim_R0008 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Plim_R0001 tRNA-Val K14237 tRNA-Val; tRNA Val D Plim_R0017 tRNA-Val K14237 tRNA-Val; tRNA Val D Plim_R0061 tRNA-Val K14237 tRNA-Val; tRNA Val D Plim_R0033 tRNA-Val K14237 tRNA-Val; tRNA Val D Plim_2659 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Plim_3343 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Plim_2281 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Plim_2282 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Plim_2280 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Plim_3486 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Plim_2551 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Plim_3302 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Plim_3465 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Plim_1654 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Plim_4204 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Plim_0842 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Plim_2442 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Plim_1132 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Plim_2729 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Plim_2069 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Plim_3733 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Plim_2426 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Plim_0837 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Plim_1338 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Plim_2498 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Plim_0025 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Plim_2505 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Plim_2262 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Plim_2197 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Plim_0771 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:plm03060] D Plim_0496 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Plim_0437 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Plim_2050 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Plim_1349 protein-export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D Plim_1348 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Plim_1710 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Plim_2368 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Plim_0181 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Plim_R0029 ffs; SRP RNA; RNA component of signal recognitionparti cle K01983 ffs; SRP RNA D Plim_4170 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Plim_0184 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Plim_2724 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Plim_2725 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Plim_2680 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Plim_1364 peptidase A8 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:plm04122] D Plim_3794 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Plim_2817 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D Plim_4028 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Plim_0865 thiamineS protein K21232 MOCS2A; molybdopterin synthase sulfur carrier subunit D Plim_0864 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Plim_3318 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Plim_3716 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Plim_0132 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Plim_1982 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Plim_0247 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:plm03018] D Plim_0357 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Plim_2603 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Plim_0380 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Plim_2449 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Plim_1259 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Plim_1686 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Plim_1229 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Plim_2040 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Plim_3599 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Plim_2017 YmdA/YtgF protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D Plim_2047 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Plim_2333 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_1501 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_3585 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_2926 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2928 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2524 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2402 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Plim_1864 tRNA adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:plm03030] D Plim_1265 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Plim_0692 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Plim_1351 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Plim_3591 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Plim_0036 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Plim_2624 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Plim_0213 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Plim_2626 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Plim_4135 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Plim_3011 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Plim_2844 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:plm03410] D Plim_0613 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Plim_3349 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Plim_2633 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Plim_0200 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Plim_1386 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Plim_2581 Endonuclease/exonuclease/phosphatase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Plim_0383 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Plim_3011 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Plim_0674 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Plim_2844 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:plm03420] D Plim_3728 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Plim_1595 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Plim_0682 ABC transporter related protein K03701 uvrA; excinuclease ABC subunit A D Plim_3242 ABC transporter related protein K03701 uvrA; excinuclease ABC subunit A D Plim_0981 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Plim_4113 excinuclease ABC C subunit domain protein K03703 uvrC; excinuclease ABC subunit C D Plim_1235 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Plim_3457 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Plim_0849 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Plim_3011 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Plim_2844 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:plm03430] D Plim_4057 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Plim_1838 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Plim_1235 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Plim_3457 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Plim_0849 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Plim_0430 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Plim_1991 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Plim_0674 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Plim_2626 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Plim_1265 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Plim_0036 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Plim_0692 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Plim_3591 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Plim_1351 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Plim_2844 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Plim_4275 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:plm03440] D Plim_0674 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Plim_2626 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Plim_0725 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Plim_0694 recombination protein RecR K06187 recR; recombination protein RecR D Plim_2553 recA protein K03553 recA; recombination protein RecA D Plim_3011 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Plim_2446 helix-hairpin-helix motif protein K03550 ruvA; holliday junction DNA helicase RuvA D Plim_2430 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Plim_2444 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Plim_0908 DEAD/DEAH box helicase domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Plim_2653 AAA-4 family protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Plim_1265 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Plim_0036 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Plim_0692 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Plim_3591 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Plim_1351 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Plim_1374 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:plm03250] D Plim_3119 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:plm02010] D Plim_3186 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Plim_3185 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Plim_3184 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Plim_3183 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Plim_4006 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Plim_4005 hypothetical protein K02011 afuB; iron(III) transport system permease protein D Plim_2066 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Plim_2064 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Plim_2065 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Plim_0778 ribose ABC transporter periplasmic-binding protein K10439 rbsB; ribose transport system substrate-binding protein D Plim_0780 inner-membrane translocator K10440 rbsC; ribose transport system permease protein D Plim_0779 ABC transporter related protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Plim_1490 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Plim_1489 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Plim_1488 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Plim_1487 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Plim_2306 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Plim_2307 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Plim_2308 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Plim_2309 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Plim_2310 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Plim_1995 periplasmic solute binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein D Plim_1993 ABC-3 protein K11708 troC; manganese/zinc/iron transport system permease protein D Plim_1992 ABC-3 protein K11709 troD; manganese/zinc/iron transport system permease protein D Plim_1994 ABC transporter related protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D Plim_2352 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Plim_0769 Abortive infection protein K09696 natB; sodium transport system permease protein D Plim_3144 Abortive infection protein K09696 natB; sodium transport system permease protein D Plim_3143 ABC transporter related protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Plim_0768 ABC transporter related protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Plim_2518 protein of unknown function DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein D Plim_3433 ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Plim_2517 ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Plim_2512 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Plim_0324 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Plim_1126 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Plim_2765 ABC transporter related protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Plim_0935 ABC transporter related protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] C 02060 Phosphotransferase system (PTS) [PATH:plm02060] D Plim_0359 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Plim_0360 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr D Plim_2395 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Plim_0361 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:plm03070] D Plim_3688 type II and III secretion system protein K02453 gspD; general secretion pathway protein D D Plim_0156 type II secretion system protein K02455 gspF; general secretion pathway protein F D Plim_3388 type II secretion system protein K02455 gspF; general secretion pathway protein F D Plim_2895 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Plim_3351 hypothetical protein K02456 gspG; general secretion pathway protein G D Plim_3387 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Plim_1349 protein-export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D Plim_0437 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Plim_2050 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Plim_0496 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Plim_1348 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Plim_1710 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Plim_2368 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Plim_4170 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Plim_0181 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Plim_2724 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Plim_2725 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Plim_2680 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:plm02020] D Plim_1491 PAS sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Plim_0429 ATP-binding region ATPase domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Plim_3822 ATP-binding region ATPase domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Plim_1485 response regulator receiver K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Plim_2180 response regulator receiver K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Plim_3821 response regulator receiver K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Plim_3159 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Plim_1695 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Plim_3028 Phosphodiesterase/alkaline phosphatase D-like protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Plim_1490 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Plim_3620 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1243 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1379 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1809 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1811 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_2772 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_2552 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1010 Trypsin-like protein serine protease typically periplasmic containing C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1231 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D Plim_1232 acriflavin resistance protein K07788 mdtB; multidrug efflux pump D Plim_1233 acriflavin resistance protein K07789 mdtC; multidrug efflux pump D Plim_2756 ATP-binding region ATPase domain protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Plim_3359 flagellin domain protein K02406 fliC; flagellin D Plim_1142 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA D Plim_2583 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Plim_1874 Osmosensitive K channel His kinase sensor K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D Plim_1875 response regulator receiver K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D Plim_1871 potassium-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D Plim_1872 K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D Plim_1873 potassium-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit D Plim_2956 Uncharacterized protein required for cytochrome oxidase assembly-like protein K02259 COX15; heme a synthase [EC:1.17.99.9] D Plim_2347 peptidase S1 and S6 chymotrypsin/Hap K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D Plim_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Plim_3410 Chromosomal replication initiator DnaA domain protein K02313 dnaA; chromosomal replication initiator protein D Plim_4152 hypothetical protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Plim_2407 triphosphoribosyl-dephospho-CoA protein K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D Plim_1786 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Plim_3143 ABC transporter related protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Plim_0768 ABC transporter related protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Plim_0769 Abortive infection protein K09696 natB; sodium transport system permease protein D Plim_3144 Abortive infection protein K09696 natB; sodium transport system permease protein D Plim_3217 ATP-binding region ATPase domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Plim_2876 response regulator receiver K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Plim_2278 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_0311 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_2998 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_0341 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_1973 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_2136 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_3470 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_3427 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_4282 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_0798 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Plim_0875 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Plim_1817 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Plim_0795 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Plim_3839 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Plim_0794 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Plim_0793 response regulator receiver K02282 cpaE; pilus assembly protein CpaE D Plim_1918 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Plim_1815 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Plim_1814 type II secretion system protein K12510 tadB; tight adherence protein B D Plim_1917 type II secretion system protein K12510 tadB; tight adherence protein B D Plim_1916 type II secretion system protein K12511 tadC; tight adherence protein C D Plim_1813 type II secretion system protein K12511 tadC; tight adherence protein C D Plim_2275 protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Plim_2273 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Plim_2274 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Plim_0683 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_1921 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_1847 sigma-54 factor interaction domain-containing protein K07713 zraR; two-component system, NtrC family, response regulator HydG D Plim_2937 sigma-54 factor interaction domain-containing protein K07713 zraR; two-component system, NtrC family, response regulator HydG D Plim_1639 sigma-54 factor interaction domain-containing protein K07713 zraR; two-component system, NtrC family, response regulator HydG D Plim_0139 sigma-54 factor interaction domain-containing protein K07714 atoC; two-component system, NtrC family, response regulator AtoC D Plim_3050 PAS sensor protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Plim_0695 RNA polymerase sigma-54 factor, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Plim_1912 Protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Plim_1909 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Plim_1907 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D Plim_1906 ATP-binding region ATPase domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Plim_1910 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Plim_2874 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Plim_1911 Protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Plim_1651 PAS sensor protein K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Plim_3265 regulatory protein Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Plim_1319 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Plim_1503 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Plim_0424 Cytochrome b/b6 domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Plim_2688 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Plim_2687 cytochrome bd ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Plim_3062 MCP methyltransferase, CheR-type K19620 phcB; extracellular factor (EF) 3-hydroxypalmitic acid methyl ester biosynthesis protein D Plim_4112 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Plim_2510 Hpt domain protein K20976 hptB; histidine phosphotransfer protein HptB D Plim_3367 response regulator receiver K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D Plim_2760 Sulfate transporter/antisigma-factor antagonist STAS K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D Plim_3803 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:plm02024] D Plim_0761 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Plim_0052 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Plim_0134 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Plim_1875 response regulator receiver K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D Plim_2306 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Plim_2307 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Plim_2308 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Plim_2309 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Plim_2310 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Plim_0574 Hemagluttinin repeat-containing protein K20276 bapA; large repetitive protein D Plim_3265 regulatory protein Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Plim_3461 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Plim_1923 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Plim_1403 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Plim_1700 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Plim_1404 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Plim_1405 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Plim_2226 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Plim_1710 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Plim_1349 protein-export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D Plim_0437 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Plim_2050 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Plim_0496 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Plim_1348 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Plim_2368 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Plim_4170 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Plim_0181 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Plim_4152 hypothetical protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:plm02030] D Plim_1909 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Plim_0778 ribose ABC transporter periplasmic-binding protein K10439 rbsB; ribose transport system substrate-binding protein D Plim_1906 ATP-binding region ATPase domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Plim_1907 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D Plim_1910 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Plim_2874 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Plim_2875 CheC domain protein K03409 cheX; chemotaxis protein CheX D Plim_0811 chemotaxis protein CheX, putative K03409 cheX; chemotaxis protein CheX D Plim_1911 Protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Plim_1912 Protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Plim_3096 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Plim_2500 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Plim_4069 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Plim_4041 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Plim_2583 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Plim_4077 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Plim_2582 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:plm02040] D Plim_3956 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Plim_3095 secretory protein YscJ/FliF family protein K02409 fliF; flagellar M-ring protein FliF D Plim_3096 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Plim_3097 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Plim_3098 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Plim_3099 hypothetical protein K02413 fliJ; flagellar protein FliJ D Plim_2500 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Plim_4069 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Plim_4041 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Plim_4068 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D Plim_4067 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Plim_4066 export protein FliQ family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Plim_4065 type III secretion system inner membrane R protein K02421 fliR; flagellar biosynthesis protein FliR D Plim_1138 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Plim_1391 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Plim_2704 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D Plim_3954 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Plim_3955 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Plim_3102 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Plim_3682 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Plim_2702 protein of unknown function DUF1078 domain protein K02391 flgF; flagellar basal-body rod protein FlgF D Plim_2703 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Plim_2705 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Plim_2706 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Plim_2709 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Plim_2711 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Plim_3359 flagellin domain protein K02406 fliC; flagellin D Plim_1693 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Plim_1692 hypothetical protein K02422 fliS; flagellar secretion chaperone FliS D Plim_2583 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Plim_4077 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Plim_2582 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Plim_1616 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Plim_0214 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D Plim_0893 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Plim_1128 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Plim_0381 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Plim_0695 RNA polymerase sigma-54 factor, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Plim_1142 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells [PATH:plm04820] D Plim_2314 hypothetical protein K19720 COL3A; collagen type III alpha D Plim_2603 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:plm04980] D Plim_3905 ATP/cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Plim_2467 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:plm01501] D Plim_1016 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1 D Plim_1017 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Plim_2852 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Plim_4064 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Plim_1789 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:plm01502] D Plim_0009 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Plim_0680 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Plim_1131 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Plim_0205 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:plm01503] D Plim_3620 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1243 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1379 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1809 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1811 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_2772 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_2552 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1010 Trypsin-like protein serine protease typically periplasmic containing C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_3119 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Plim_2852 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Plim_0918 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:plm01000] C 01001 Protein kinases [BR:plm01001] D Plim_3400 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2753 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_3456 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2445 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_3648 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2182 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_4042 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_0008 RNA polymerase sigma factor, sigma-70 family K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_0227 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_0540 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_1473 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_1234 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2849 tyrosine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2353 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2492 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2186 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2266 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2175 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_0821 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_3370 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_3446 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_3104 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2941 Pyrrolo-quinoline quinone K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_3897 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_4000 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_4035 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_0987 Serine/threonine protein kinase-related protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Plim_2056 anti-sigma regulatory factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Plim_3668 Serine/threonine protein kinase-related protein K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1] D Plim_3874 capsular exopolysaccharide family K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D Plim_4111 capsular exopolysaccharide family K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D Plim_1491 PAS sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Plim_0429 ATP-binding region ATPase domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Plim_3822 ATP-binding region ATPase domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Plim_2756 ATP-binding region ATPase domain protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Plim_1874 Osmosensitive K channel His kinase sensor K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D Plim_0002 ATP-binding region ATPase domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Plim_3217 ATP-binding region ATPase domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Plim_3050 PAS sensor protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Plim_0237 ATP-binding region ATPase domain protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Plim_2085 ATP-binding region ATPase domain protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Plim_3849 ATP-binding region ATPase domain protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Plim_1906 ATP-binding region ATPase domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Plim_1651 PAS sensor protein K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Plim_2762 PAS sensor protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:plm01009] D Plim_3615 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Plim_1779 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D Plim_1800 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Plim_2397 Phosphoprotein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D Plim_2087 Phosphoprotein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:plm01002] D Plim_1364 peptidase A8 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D Plim_1574 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Plim_1841 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Plim_0796 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Plim_1819 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Plim_0163 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Plim_0813 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Plim_1264 phosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Plim_2694 Glutamate synthase (NADH) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Plim_1342 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Plim_2612 sugar isomerase (SIS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Plim_3421 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Plim_2615 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Plim_1677 ThiJ/PfpI domain protein K05520 yhbO; deglycase [EC:3.5.1.124] D Plim_0330 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D Plim_1524 ThiJ/PfpI domain protein K05520 yhbO; deglycase [EC:3.5.1.124] D Plim_2196 Abortive infection protein K07052 K07052; CAAX protease family protein D Plim_3105 Abortive infection protein K07052 K07052; CAAX protease family protein D Plim_3689 Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D Plim_0240 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Plim_3886 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Plim_2477 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Plim_3800 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Plim_1507 peptidase M20 K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Plim_1766 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Plim_2427 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Plim_0595 Carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D Plim_0067 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Plim_1623 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Plim_2044 peptidase M50 K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-] D Plim_3363 peptidase M50 K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Plim_0366 peptidase M50 K16922 yydH; putative peptide zinc metalloprotease protein D Plim_1016 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1 D Plim_1447 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase D Plim_3620 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1243 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1379 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1809 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1811 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_2772 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_2552 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1010 Trypsin-like protein serine protease typically periplasmic containing C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_2347 peptidase S1 and S6 chymotrypsin/Hap K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D Plim_2107 peptidase S8 and S53 subtilisin kexin sedolisin K17734 aprX; serine protease AprX [EC:3.4.21.-] D Plim_0588 Prolyl oligopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D Plim_2538 Dipeptidyl-peptidase IV K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Plim_3912 peptidase S9 prolyl oligopeptidase active site domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Plim_3337 Endopeptidase Clp K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Plim_3338 Endopeptidase Clp K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Plim_4252 peptidase S14 ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Plim_2243 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Plim_1152 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Plim_2514 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Plim_0662 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Plim_3471 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Plim_1402 signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-] D Plim_2159 signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-] D Plim_0515 Cyanophycinase-like exopeptidase K13282 cphB; cyanophycinase [EC:3.4.15.6] D Plim_2919 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D Plim_3276 Rhomboid family protein K19225 gluP; rhomboid protease GluP [EC:3.4.21.105] D Plim_1385 Rhomboid family protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D Plim_1588 Rhomboid family protein K07059 K07059; rhomboid family protein D Plim_1012 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Plim_3208 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Plim_2966 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Plim_2640 proteinase inhibitor I11 ecotin K08276 eco; ecotin D Plim_1157 alpha-2-macroglobulin domain protein K06894 yfhM; alpha-2-macroglobulin C 01003 Glycosyltransferases [BR:plm01003] D Plim_3541 glycosyl transferase family 2 K00729 ALG5; dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] D Plim_1630 Dolichyl-phosphate beta-D-mannosyltransferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D Plim_3397 4-amino-4-deoxy-L-arabinose transferase-like glycosyltransferase of PMT family K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] D Plim_1408 TPR repeat-containing protein K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-] D Plim_0656 TPR repeat-containing protein K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-] D Plim_3244 Tetratricopeptide TPR_2 repeat protein K23424 TMTC; protein O-mannosyl-transferase [EC:2.4.1.-] D Plim_1042 putative LPS biosynthesis related glycosyltransferase K20151 fucT; alpha(1,3/1,4) fucosyltransferase [EC:2.4.1.65 2.4.1.152] D Plim_1134 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D Plim_2437 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Plim_0891 glycosyl transferase family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] D Plim_3714 Sterol 3-beta-glucosyltransferase K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173] C 01005 Lipopolysaccharide biosynthesis proteins [BR:plm01005] D Plim_0918 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Plim_0943 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Plim_0919 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Plim_2360 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Plim_2359 protein of unknown function DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Plim_0158 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Plim_1862 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Plim_2366 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Plim_4193 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Plim_1717 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Plim_3740 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Plim_1964 glycosyl transferase family 9 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D Plim_0899 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Plim_0900 glycosyl transferase group 1 K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] D Plim_1528 sugar isomerase (SIS) K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Plim_0898 cytidyltransferase-related domain protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Plim_2437 glycosyl transferase family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Plim_0633 Undecaprenyl-phosphate galactose phosphotransferase K13012 wbqP; O-antigen biosynthesis protein WbqP C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:plm01011] D Plim_1195 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Plim_0011 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Plim_0012 Mur ligase middle domain protein K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Plim_1571 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Plim_0681 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Plim_0009 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Plim_1131 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Plim_0205 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Plim_1823 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Plim_0195 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Plim_4064 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Plim_1789 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Plim_0600 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] C 01004 Lipid biosynthesis proteins [BR:plm01004] D Plim_2566 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Plim_2221 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Plim_3120 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_2564 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_2562 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_3658 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_1694 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Plim_3965 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_1144 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_3123 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_2034 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_0880 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Plim_3297 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Plim_3121 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Plim_3124 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Plim_3893 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Plim_1674 short-chain dehydrogenase/reductase SDR K10780 fabL; enoyl-[acyl-carrier protein] reductase III [EC:1.3.1.104] D Plim_4118 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Plim_2567 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Plim_0829 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Plim_3130 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:plm01008] D Plim_0463 PfaD family protein K15329 pksE; trans-AT polyketide synthase, acyltransferase and oxidoreductase domains D Plim_1607 aminotransferase class V K04127 cefD; isopenicillin-N epimerase [EC:5.1.1.17] C 01006 Prenyltransferases [BR:plm01006] D Plim_2441 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Plim_2915 protein of unknown function DUF116 K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Plim_0149 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Plim_0265 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Plim_2244 Phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D Plim_1559 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Plim_3757 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Plim_2955 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Plim_3681 Prenyltransferase/squalene oxidase K05956 RABGGTB; geranylgeranyl transferase type-2 subunit beta [EC:2.5.1.60] C 01007 Amino acid related enzymes [BR:plm01007] D Plim_2659 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Plim_3343 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Plim_3486 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Plim_2197 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Plim_0771 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Plim_2442 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Plim_1338 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Plim_1132 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Plim_2426 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Plim_2069 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Plim_3733 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Plim_0837 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Plim_3302 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Plim_3465 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Plim_0025 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Plim_1654 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Plim_0842 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Plim_2498 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Plim_4204 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Plim_2551 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Plim_2505 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Plim_2262 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Plim_0135 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Plim_1678 aminotransferase class I and II K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D Plim_2892 aminotransferase class I and II K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D Plim_3995 aminotransferase class I and II K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Plim_3414 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Plim_2077 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Plim_1470 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Plim_2767 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Plim_2637 aminotransferase class-III K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Plim_1143 aminotransferase class-III K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Plim_2747 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Plim_3544 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Plim_1939 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Plim_1744 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 [BR:plm00199] C 00194 Photosynthesis proteins [BR:plm00194] D Plim_0177 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Plim_0176 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Plim_0175 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Plim_0174 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Plim_0173 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Plim_0172 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Plim_0171 H+transporting two-sector ATPase C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Plim_0170 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:plm03000] D Plim_3111 helix-turn-helix-domain containing protein AraC type K07506 K07506; AraC family transcriptional regulator D Plim_0950 methylated-DNA/protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Plim_0774 helix-turn-helix-domain containing protein AraC type K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Plim_2801 helix-turn-helix-domain containing protein AraC type K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Plim_3035 helix-turn-helix-domain containing protein AraC type K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Plim_3906 helix-turn-helix-domain containing protein AraC type K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Plim_0468 Transcriptional regulator TetR K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D Plim_1118 regulatory protein TetR K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D Plim_1199 regulatory protein MarR K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D Plim_0747 ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Plim_2145 ferric-uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Plim_3265 regulatory protein Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Plim_2033 regulatory protein ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Plim_1768 regulatory protein ArsR K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D Plim_0013 regulatory protein ArsR K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D Plim_2241 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D Plim_1017 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Plim_1586 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Plim_3645 helix-turn-helix domain protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Plim_4195 Aldehyde Dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Plim_1670 Aldehyde Dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Plim_2339 FMN-binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D Plim_2897 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Plim_0278 amino acid-binding ACT domain protein K03567 gcvR; glycine cleavage system transcriptional repressor D Plim_3490 Negative transcriptional regulator K07734 paiB; transcriptional regulator D Plim_1432 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Plim_1282 zinc finger DksA/TraR C4-type K06204 dksA; RNA polymerase-binding transcription factor D Plim_4090 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Plim_1794 protein of unknown function UPF0040 K03925 mraZ; transcriptional regulator MraZ D Plim_2799 protein of unknown function UPF0040 K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:plm03021] D Plim_0499 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Plim_0602 RNA polymerase alpha subunit domain protein K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Plim_0443 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Plim_0472 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Plim_2215 aspartic acid-rich protein aspolin2-1-like protein K03048 rpoE; DNA-directed RNA polymerase subunit delta D Plim_2053 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Plim_1616 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Plim_0214 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D Plim_0893 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Plim_1128 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Plim_0381 RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor D Plim_0235 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Plim_1457 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Plim_2616 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Plim_2252 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Plim_0695 RNA polymerase sigma-54 factor, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Plim_1142 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA D Plim_2559 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D Plim_3601 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D Plim_0438 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D Plim_3158 Stage II sporulation E family protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Plim_0115 Stage II sporulation E family protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Plim_2083 Stage II sporulation E family protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Plim_2161 Stage II sporulation E family protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Plim_0812 Stage II sporulation E family protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Plim_3218 Stage II sporulation E family protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Plim_0427 anti-anti-sigma factor K04749 rsbV; anti-sigma B factor antagonist D Plim_1550 hypothetical protein K04749 rsbV; anti-sigma B factor antagonist D Plim_1390 hypothetical protein K04749 rsbV; anti-sigma B factor antagonist D Plim_2399 Sulfate transporter/antisigma-factor antagonist STAS K04749 rsbV; anti-sigma B factor antagonist D Plim_2057 anti-anti-sigma factor K04749 rsbV; anti-sigma B factor antagonist D Plim_2208 Sulfate transporter/antisigma-factor antagonist STAS K04749 rsbV; anti-sigma B factor antagonist D Plim_2056 anti-sigma regulatory factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Plim_1282 zinc finger DksA/TraR C4-type K06204 dksA; RNA polymerase-binding transcription factor D Plim_2487 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Plim_2040 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Plim_3599 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:plm03019] D Plim_0357 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Plim_0231 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Plim_2017 YmdA/YtgF protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D Plim_2449 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Plim_3334 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D Plim_2466 metal-dependent phosphohydrolase HD sub domain protein K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D Plim_1259 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Plim_1686 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Plim_1229 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Plim_2603 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Plim_0380 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Plim_2040 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Plim_3599 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Plim_2047 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Plim_2333 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_1501 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_3585 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_2926 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2928 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2524 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2402 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D Plim_1864 tRNA adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Plim_2278 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_0311 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_2998 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_0341 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_1973 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_2136 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_3470 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_3427 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_4282 carbon storage regulator K03563 csrA; carbon storage regulator D Plim_1384 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome [BR:plm03041] C 03011 Ribosome [BR:plm03011] D Plim_1620 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Plim_3194 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Plim_0483 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Plim_0732 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Plim_0494 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Plim_2627 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Plim_0474 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Plim_0491 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Plim_2878 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Plim_0476 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Plim_0498 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Plim_0473 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Plim_0497 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Plim_0490 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Plim_0379 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Plim_0180 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Plim_0486 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Plim_0863 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Plim_0481 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Plim_0856 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Plim_0852 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Plim_0440 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Plim_0480 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Plim_0477 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Plim_0478 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Plim_0489 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Plim_0492 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Plim_2625 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Plim_0441 Ribosomal protein L10-like protein K02864 RP-L10; large subunit ribosomal protein L10 D Plim_0439 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Plim_0442 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Plim_2877 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Plim_0487 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Plim_0495 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Plim_0484 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Plim_0500 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Plim_0493 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Plim_0178 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Plim_2503 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Plim_0356 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Plim_0482 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Plim_0479 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Plim_0488 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Plim_0238 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Plim_2279 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Plim_0485 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Plim_0923 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Plim_2568 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Plim_0436 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Plim_2502 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Plim_2629 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D Plim_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Plim_R0024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Plim_R0046 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Plim_R0055 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:plm03009] D Plim_0231 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Plim_4144 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] D Plim_1282 zinc finger DksA/TraR C4-type K06204 dksA; RNA polymerase-binding transcription factor D Plim_2559 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D Plim_3601 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D Plim_0438 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D Plim_3509 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Plim_1107 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Plim_2178 methyltransferase small K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Plim_0056 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Plim_3975 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Plim_4021 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Plim_2101 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Plim_1764 tRNA/rRNA methyltransferase (SpoU) K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Plim_1765 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Plim_4030 protein of unknown function Met10 K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Plim_3930 protein of unknown function Met10 K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Plim_2179 methyltransferase small K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Plim_2783 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Plim_4141 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Plim_2815 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Plim_2588 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Plim_2721 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Plim_0631 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Plim_3699 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Plim_1165 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Plim_2585 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Plim_0735 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Plim_0357 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Plim_0102 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Plim_1259 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Plim_1686 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Plim_0549 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Plim_2246 small GTP-binding protein K03977 engA; GTPase D Plim_1713 GTP-binding proten HflX K03665 hflX; GTPase D Plim_1857 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Plim_2557 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Plim_0053 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein D Plim_1339 iojap-like protein K09710 ybeB; ribosome-associated protein D Plim_2234 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Plim_0362 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D Plim_1659 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:plm03016] D Plim_3675 beta-lactamase domain protein K00784 rnz; ribonuclease Z [EC:3.1.26.11] D Plim_2995 Nuz K00784 rnz; ribonuclease Z [EC:3.1.26.11] D Plim_2095 Metal-dependent hydrolase of the beta-lactamase superfamily III-like protein K00784 rnz; ribonuclease Z [EC:3.1.26.11] D Plim_3334 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D Plim_3385 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D Plim_2659 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Plim_3343 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Plim_2498 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Plim_2426 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Plim_3733 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Plim_1132 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Plim_3486 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Plim_1338 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Plim_0837 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Plim_3302 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Plim_2551 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Plim_3465 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Plim_1654 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Plim_4204 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Plim_0842 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Plim_2442 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Plim_2069 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Plim_0025 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Plim_2505 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Plim_2262 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Plim_2197 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Plim_0771 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Plim_2173 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Plim_2973 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Plim_3296 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Plim_2576 putative methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Plim_0841 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Plim_2227 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Plim_0245 tRNA pseudouridine synthase D TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D Plim_3118 tRNA pseudouridine synthase D TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D Plim_3794 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Plim_1857 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Plim_1559 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Plim_1709 small GTP-binding protein K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Plim_1990 small GTP-binding protein K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Plim_2536 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Plim_1513 protein of unknown function DUF549 K10761 THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79] D Plim_2584 inositol monophosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Plim_1542 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Plim_R0064 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Plim_2745 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Plim_0672 Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D Plim_2147 ABC transporter related protein K06020 ettA; energy-dependent translational throttle protein EttA D Plim_3619 CMP/dCMP deaminase zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Plim_0199 dihydrouridine synthase DuS K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Plim_2300 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Plim_3680 dihydrouridine synthase DuS K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Plim_1655 RNA modification enzyme, MiaB family K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Plim_2207 RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D Plim_2247 Methyltransferase type 11 K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D Plim_0179 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Plim_1472 tRNA/rRNA methyltransferase (SpoU) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Plim_4028 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Plim_2978 iron-sulfur cluster assembly accessory protein K13628 iscA; iron-sulfur cluster assembly protein D Plim_0230 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D Plim_4213 FAD dependent oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D Plim_1792 S-adenosylmethionine/tRNA-ribosyltransferase-isom erase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Plim_1942 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Plim_4125 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Plim_2408 conserved hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Plim_1943 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Plim_2723 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Plim_3280 domain of unknown function DUF1730 K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Plim_1347 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Plim_2018 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Plim_1236 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Plim_2513 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Plim_0814 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Plim_2449 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Plim_0380 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Plim_2987 PilT protein domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] C 03012 Translation factors [BR:plm03012] D Plim_0024 translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1 D Plim_2558 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Plim_2501 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Plim_1648 ABC transporter related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Plim_3193 translation elongation factor Ts K02357 tsf; elongation factor Ts D Plim_0435 translation elongation factor Tu K02358 tuf; elongation factor Tu D Plim_0475 translation elongation factor G K02355 fusA; elongation factor G D Plim_2166 translation elongation factor G K02355 fusA; elongation factor G D Plim_0922 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D Plim_3273 ribosome recycling factor K02838 frr; ribosome recycling factor D Plim_3974 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Plim_2628 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Plim_4134 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Plim_1898 Elongation factor P K02356 efp; elongation factor P D Plim_0597 Lysine--tRNA ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D Plim_2354 hypothetical protein K02836 prfB; peptide chain release factor 2 D Plim_1368 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:plm03110] D Plim_2046 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Plim_0603 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D Plim_1734 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Plim_1779 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D Plim_1800 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Plim_2047 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Plim_2333 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_1501 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_3585 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_3027 Heat shock protein 70 K04045 hscC; molecular chaperone HscC D Plim_2926 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2928 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2524 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2925 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Plim_0663 chaperone DnaJ domain protein K05516 cbpA; curved DNA-binding protein D Plim_1085 heat shock protein DnaJ domain protein K05801 djlA; DnaJ like chaperone protein D Plim_2924 GrpE protein K03687 GRPE; molecular chaperone GrpE D Plim_1230 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Plim_1175 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Plim_1174 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Plim_2927 chaperonin Cpn10 K04078 groES; chaperonin GroES D Plim_2523 chaperonin Cpn10 K04078 groES; chaperonin GroES D Plim_2732 chaperonin Cpn10 K04078 groES; chaperonin GroES D Plim_3620 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1243 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1379 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1809 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1811 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_2772 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_2552 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_1010 Trypsin-like protein serine protease typically periplasmic containing C-terminal PDZ domain K04771 degP; serine protease Do [EC:3.4.21.107] D Plim_0067 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Plim_1623 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Plim_0170 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Plim_3119 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Plim_3654 Peptidylprolyl isomerase K09565 PPIF; peptidyl-prolyl isomerase F (cyclophilin D) [EC:5.2.1.8] D Plim_3331 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Plim_3747 peptidylprolyl isomerase FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D Plim_0243 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:plm04131] D Plim_2031 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Plim_3681 Prenyltransferase/squalene oxidase K05956 RABGGTB; geranylgeranyl transferase type-2 subunit beta [EC:2.5.1.60] D Plim_0184 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Plim_0647 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Plim_3274 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Plim_1779 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D Plim_1800 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:plm04121] C 03051 Proteasome [BR:plm03051] D Plim_1779 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D Plim_1800 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:plm03032] D Plim_4135 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Plim_1271 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta D Plim_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Plim_3410 Chromosomal replication initiator DnaA domain protein K02313 dnaA; chromosomal replication initiator protein D Plim_2624 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Plim_0213 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Plim_2626 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Plim_1265 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Plim_0036 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Plim_3591 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Plim_1351 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Plim_0692 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Plim_3011 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Plim_2844 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Plim_4275 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Plim_0106 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Plim_2267 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Plim_0105 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Plim_0450 DNA topoisomerase type IIA subunit B region 2 domain protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Plim_3565 ATP-binding region ATPase domain protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Plim_2200 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:plm03036] D Plim_0231 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Plim_1271 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta D Plim_0663 chaperone DnaJ domain protein K05516 cbpA; curved DNA-binding protein D Plim_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Plim_3410 Chromosomal replication initiator DnaA domain protein K02313 dnaA; chromosomal replication initiator protein D Plim_2476 Ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein D Plim_1167 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Plim_1683 chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A D Plim_2838 chromosome segregation and condensation protein ScpB K06024 scpB; segregation and condensation protein B D Plim_2190 segregation and condensation protein B K06024 scpB; segregation and condensation protein B D Plim_1789 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Plim_2063 cell division FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Plim_1130 cell cycle protein K03588 ftsW; cell division protein FtsW D Plim_1127 cell cycle protein K03588 ftsW; cell division protein FtsW D Plim_2852 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Plim_1318 Cobyrinic acid ac-diamide synthase K03609 minD; septum site-determining protein MinD D Plim_2620 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Plim_1365 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Plim_2897 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Plim_2536 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Plim_2346 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D Plim_1185 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D Plim_4272 integrase family protein K04763 xerD; integrase/recombinase XerD D Plim_0393 Cobyrinic acid ac-diamide synthase K03593 mrp; ATP-binding protein involved in chromosome partitioning C 03400 DNA repair and recombination proteins [BR:plm03400] D Plim_1430 DNA photolyase FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Plim_3349 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Plim_0613 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Plim_3895 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Plim_0950 methylated-DNA/protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Plim_3755 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D Plim_0200 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Plim_1386 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Plim_2633 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Plim_2581 Endonuclease/exonuclease/phosphatase K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Plim_0383 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Plim_0509 conserved hypothetical protein K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D Plim_0674 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Plim_2844 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Plim_3011 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Plim_1595 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Plim_0682 ABC transporter related protein K03701 uvrA; excinuclease ABC subunit A D Plim_3242 ABC transporter related protein K03701 uvrA; excinuclease ABC subunit A D Plim_0981 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Plim_4113 excinuclease ABC C subunit domain protein K03703 uvrC; excinuclease ABC subunit C D Plim_1235 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Plim_3457 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Plim_0849 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Plim_0443 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Plim_0472 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Plim_0499 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Plim_0602 RNA polymerase alpha subunit domain protein K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Plim_2215 aspartic acid-rich protein aspolin2-1-like protein K03048 rpoE; DNA-directed RNA polymerase subunit delta D Plim_2053 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Plim_3728 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Plim_4057 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Plim_1838 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Plim_0430 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Plim_1991 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Plim_1265 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Plim_0036 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Plim_3591 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Plim_1351 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Plim_0692 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Plim_2626 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Plim_4275 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Plim_2553 recA protein K03553 recA; recombination protein RecA D Plim_2446 helix-hairpin-helix motif protein K03550 ruvA; holliday junction DNA helicase RuvA D Plim_2430 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Plim_2444 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Plim_1374 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Plim_3342 DNA repair exonuclease-like protein K03547 sbcD; DNA repair protein SbcD/Mre11 D Plim_0908 DEAD/DEAH box helicase domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Plim_2653 AAA-4 family protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Plim_0725 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Plim_0694 recombination protein RecR K06187 recR; recombination protein RecR D Plim_1377 Exodeoxyribonuclease V K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Plim_1441 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Plim_0106 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Plim_2267 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Plim_0105 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Plim_0450 DNA topoisomerase type IIA subunit B region 2 domain protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Plim_3565 ATP-binding region ATPase domain protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Plim_2200 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Plim_1271 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta D Plim_1229 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Plim_0305 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Plim_2243 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Plim_1327 conserved hypothetical protein K14160 imuA; protein ImuA D Plim_1326 nucleotidyltransferase/DNA polymerase K14161 imuB; protein ImuB D Plim_1325 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D Plim_1730 DNA-directed DNA polymerase K02347 polX; DNA polymerase (family X) D Plim_0188 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Plim_1076 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Plim_3077 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Plim_3000 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Plim_3177 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Plim_0422 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:plm03029] D Plim_0424 Cytochrome b/b6 domain protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Plim_2558 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Plim_2501 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Plim_3193 translation elongation factor Ts K02357 tsf; elongation factor Ts D Plim_0435 translation elongation factor Tu K02358 tuf; elongation factor Tu D Plim_0475 translation elongation factor G K02355 fusA; elongation factor G D Plim_2166 translation elongation factor G K02355 fusA; elongation factor G D Plim_2197 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Plim_3733 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Plim_3302 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Plim_1654 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Plim_1338 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Plim_2281 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Plim_2282 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Plim_2280 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Plim_2626 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Plim_2365 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D Plim_2047 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Plim_2333 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_1501 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_3585 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_2924 GrpE protein K03687 GRPE; molecular chaperone GrpE D Plim_2926 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2928 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2524 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2927 chaperonin Cpn10 K04078 groES; chaperonin GroES D Plim_2523 chaperonin Cpn10 K04078 groES; chaperonin GroES D Plim_2732 chaperonin Cpn10 K04078 groES; chaperonin GroES D Plim_2925 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Plim_3794 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Plim_0393 Cobyrinic acid ac-diamide synthase K03593 mrp; ATP-binding protein involved in chromosome partitioning D Plim_2955 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Plim_2956 Uncharacterized protein required for cytochrome oxidase assembly-like protein K02259 COX15; heme a synthase [EC:1.17.99.9] D Plim_1710 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Plim_0216 protein of unknown function DUF420 K07152 SCO1; protein SCO1 D Plim_3988 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Plim_1779 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D Plim_1800 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:plm02000] D Plim_2765 ABC transporter related protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Plim_0935 ABC transporter related protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Plim_0740 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Plim_4037 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Plim_0741 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Plim_3290 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Plim_1650 ABC transporter related protein K15738 uup; ABC transport system ATP-binding/permease protein D Plim_3186 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D Plim_3185 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D Plim_3184 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D Plim_3183 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D Plim_4006 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Plim_4005 hypothetical protein K02011 afuB; iron(III) transport system permease protein D Plim_2868 NMT1/THI5 like domain protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Plim_2867 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Plim_2866 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Plim_0778 ribose ABC transporter periplasmic-binding protein K10439 rbsB; ribose transport system substrate-binding protein D Plim_0780 inner-membrane translocator K10440 rbsC; ribose transport system permease protein D Plim_0779 ABC transporter related protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Plim_2066 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Plim_2064 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Plim_2065 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Plim_2843 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Plim_1490 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Plim_1489 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Plim_1488 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Plim_1487 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Plim_2306 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Plim_2307 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D Plim_2308 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D Plim_2309 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D Plim_2310 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D Plim_2859 protein of unknown function DUF534 K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D Plim_2861 inner-membrane translocator K05832 K05832; putative tryptophan/tyrosine transport system permease protein D Plim_2862 ABC transporter related protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D Plim_1403 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Plim_1700 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Plim_1404 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Plim_1405 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Plim_2226 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Plim_1852 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Plim_1995 periplasmic solute binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein D Plim_1993 ABC-3 protein K11708 troC; manganese/zinc/iron transport system permease protein D Plim_1992 ABC-3 protein K11709 troD; manganese/zinc/iron transport system permease protein D Plim_1994 ABC transporter related protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D Plim_2352 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Plim_2512 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Plim_0324 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Plim_1126 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Plim_0769 Abortive infection protein K09696 natB; sodium transport system permease protein D Plim_3144 Abortive infection protein K09696 natB; sodium transport system permease protein D Plim_3143 ABC transporter related protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Plim_0768 ABC transporter related protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Plim_2203 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component-like protein K25151 gldF; gliding motility-associated transport system permease protein D Plim_2202 ABC transporter related protein K25152 gldA; gliding motility-associated transport system ATP-binding protein D Plim_2518 protein of unknown function DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein D Plim_3433 ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Plim_2517 ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Plim_0739 protein of unknown function DUF990 K25154 evrC; viologen exporter family transport system permease protein D Plim_3531 protein of unknown function DUF990 K25155 evrB; viologen exporter family transport system permease protein D Plim_1396 ABC transporter related protein K25156 evrA; viologen exporter family transport system ATP-binding protein D Plim_0215 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Plim_4114 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Plim_3749 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Plim_0256 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Plim_0070 heme exporter protein CcmA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Plim_3673 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Plim_3013 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Plim_1117 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Plim_0127 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Plim_0469 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Plim_1965 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Plim_3165 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Plim_3659 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Plim_0100 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Plim_3164 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Plim_3482 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Plim_0470 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Plim_1966 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Plim_1116 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Plim_3166 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Plim_2328 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Plim_2389 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D Plim_2103 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D Plim_0069 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Plim_3815 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Plim_1967 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Plim_1413 major facilitator superfamily MFS_1 K03290 nanT; MFS transporter, SHS family, sialic acid transporter D Plim_3052 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Plim_1774 major facilitator superfamily MFS_1 K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D Plim_0137 major facilitator superfamily MFS_1 K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D Plim_0359 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Plim_0360 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr D Plim_2395 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Plim_0361 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Plim_1895 MIP family channel protein K09874 NIP; aquaporin NIP D Plim_2272 ammonium transporter K03320 amt; ammonium transporter, Amt family D Plim_1530 ammonium transporter K03320 amt; ammonium transporter, Amt family D Plim_0678 ammonium transporter K03320 amt; ammonium transporter, Amt family D Plim_0521 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Plim_3527 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D Plim_3304 MscS Mechanosensitive ion channel K05802 mscK; potassium-dependent mechanosensitive channel D Plim_2879 magnesium transporter K06213 mgtE; magnesium transporter D Plim_2583 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Plim_4077 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Plim_2582 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Plim_0746 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Plim_3807 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Plim_3762 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Plim_3131 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Plim_1696 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Plim_1698 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Plim_1460 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Plim_3132 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Plim_3806 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Plim_3761 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Plim_1697 Biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR D Plim_4191 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D Plim_1996 protein of unknown function UPF0187 K08994 yneE; ion channel-forming bestrophin family protein D Plim_2717 protein of unknown function UPF0187 K08994 yneE; ion channel-forming bestrophin family protein D Plim_4087 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Plim_2235 CBS domain containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D Plim_1204 phosphate-selective porin O and P K07221 oprO_P; phosphate-selective porin OprO and OprP D Plim_1582 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D Plim_4112 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Plim_4102 Carbohydrate-selective porin OprB K07267 oprB; porin D Plim_2365 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D Plim_0598 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Plim_0221 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Plim_1848 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Plim_1930 WD40-like protein repeat-like protein K17713 bamB; outer membrane protein assembly factor BamB D Plim_2733 hypothetical protein K17713 bamB; outer membrane protein assembly factor BamB D Plim_3592 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Plim_4007 hypothetical protein K17713 bamB; outer membrane protein assembly factor BamB D Plim_0982 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Plim_4240 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Plim_4033 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Plim_0258 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Plim_2376 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Plim_0217 hypothetical protein K09800 tamB; translocation and assembly module TamB D Plim_0456 Parallel beta-helix repeat protein K21449 ata; trimeric autotransporter adhesin D Plim_1782 ethanolamine transporter K16238 eat; ethanolamine permease D Plim_2609 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D Plim_1583 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Plim_2294 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump D Plim_2295 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump D Plim_1232 acriflavin resistance protein K07788 mdtB; multidrug efflux pump D Plim_1233 acriflavin resistance protein K07789 mdtC; multidrug efflux pump D Plim_1510 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE D Plim_1923 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Plim_2096 Na+/solute symporter K14393 actP; cation/acetate symporter D Plim_1649 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D Plim_0754 sodium/hydrogen exchanger K26735 KEA4_5_6; K+:H+ antiporter D Plim_0757 sodium/hydrogen exchanger K26735 KEA4_5_6; K+:H+ antiporter D Plim_0736 sodium/hydrogen exchanger K26731 CHX; K+:H+ antiporter D Plim_2302 sodium/hydrogen exchanger K26731 CHX; K+:H+ antiporter D Plim_2635 H(+)-transporting two-sector ATPase K03498 trkH; trk/ktr system potassium uptake protein D Plim_1392 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Plim_2322 conserved hypothetical protein K06901 pbuG; adenine/guanine/hypoxanthine permease D Plim_1431 Chloride channel core K03281 clcA; chloride channel protein, CIC family D Plim_2367 Chloride channel core K03281 clcA; chloride channel protein, CIC family D Plim_0184 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D Plim_3774 NADH/Ubiquinone/plastoquinone (complex I) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D Plim_0195 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Plim_1130 cell cycle protein K03588 ftsW; cell division protein FtsW D Plim_1127 cell cycle protein K03588 ftsW; cell division protein FtsW D Plim_3729 WD40 domain protein beta Propeller K03641 tolB; TolB protein D Plim_1584 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D Plim_2293 efflux transporter, RND family, MFP subunit K18298 mexE; membrane fusion protein, multidrug efflux system D Plim_1613 efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D Plim_2852 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Plim_1231 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D Plim_3874 capsular exopolysaccharide family K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D Plim_4111 capsular exopolysaccharide family K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D Plim_2696 FeoA family protein K04758 feoA; ferrous iron transport protein A D Plim_2697 FeoA family protein K04758 feoA; ferrous iron transport protein A D Plim_2698 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D Plim_1888 nucleoside recognition domain protein K04759 feoB; ferrous iron transport protein B D Plim_4187 TspO/MBR family protein K05770 TSPO; translocator protein C 02044 Secretion system [BR:plm02044] D Plim_3688 type II and III secretion system protein K02453 gspD; general secretion pathway protein D D Plim_3387 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Plim_0156 type II secretion system protein K02455 gspF; general secretion pathway protein F D Plim_3388 type II secretion system protein K02455 gspF; general secretion pathway protein F D Plim_2895 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Plim_3351 hypothetical protein K02456 gspG; general secretion pathway protein G D Plim_1574 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Plim_1841 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Plim_0408 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D Plim_0410 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D Plim_0426 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D Plim_4189 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D Plim_0407 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Plim_0425 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Plim_1294 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Plim_3285 Tfp pilus assembly protein ATPase PilM-like protein K02662 pilM; type IV pilus assembly protein PilM D Plim_3281 type II and III secretion system protein K02666 pilQ; type IV pilus assembly protein PilQ D Plim_1933 twitching motility protein K02669 pilT; twitching motility protein PilT D Plim_0409 twitching motility protein K02669 pilT; twitching motility protein PilT D Plim_0796 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Plim_1819 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Plim_1817 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Plim_0795 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Plim_3839 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Plim_0794 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Plim_0793 response regulator receiver K02282 cpaE; pilus assembly protein CpaE D Plim_1918 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Plim_1815 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Plim_1814 type II secretion system protein K12510 tadB; tight adherence protein B D Plim_1917 type II secretion system protein K12510 tadB; tight adherence protein B D Plim_1916 type II secretion system protein K12511 tadC; tight adherence protein C D Plim_1813 type II secretion system protein K12511 tadC; tight adherence protein C D Plim_0798 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Plim_0875 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Plim_2967 Helix-hairpin-helix DNA-binding class 1 K02237 comEA; competence protein ComEA D Plim_2474 ComEC/Rec2-related protein K02238 comEC; competence protein ComEC D Plim_0623 beta-lactamase domain protein K02238 comEC; competence protein ComEC D Plim_1138 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Plim_1391 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Plim_3095 secretory protein YscJ/FliF family protein K02409 fliF; flagellar M-ring protein FliF D Plim_3097 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Plim_3098 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Plim_4069 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Plim_4041 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Plim_4068 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D Plim_4067 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Plim_4066 export protein FliQ family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Plim_4065 type III secretion system inner membrane R protein K02421 fliR; flagellar biosynthesis protein FliR D Plim_2368 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Plim_1349 protein-export membrane protein SecD K12257 secDF; SecD/SecF fusion protein D Plim_0437 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Plim_2050 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Plim_0496 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Plim_0181 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Plim_4170 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Plim_1348 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Plim_1710 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Plim_2724 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Plim_2725 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Plim_2680 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:plm02042] D Plim_4087 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Plim_2235 CBS domain containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:plm02022] D Plim_1491 PAS sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Plim_0429 ATP-binding region ATPase domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Plim_3822 ATP-binding region ATPase domain protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Plim_1485 response regulator receiver K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Plim_2180 response regulator receiver K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Plim_3821 response regulator receiver K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Plim_2756 ATP-binding region ATPase domain protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Plim_1874 Osmosensitive K channel His kinase sensor K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D Plim_1875 response regulator receiver K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D Plim_0002 ATP-binding region ATPase domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Plim_0003 response regulator receiver K02483 K02483; two-component system, OmpR family, response regulator D Plim_3217 ATP-binding region ATPase domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Plim_2876 response regulator receiver K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Plim_4152 hypothetical protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Plim_1847 sigma-54 factor interaction domain-containing protein K07713 zraR; two-component system, NtrC family, response regulator HydG D Plim_2937 sigma-54 factor interaction domain-containing protein K07713 zraR; two-component system, NtrC family, response regulator HydG D Plim_1639 sigma-54 factor interaction domain-containing protein K07713 zraR; two-component system, NtrC family, response regulator HydG D Plim_0139 sigma-54 factor interaction domain-containing protein K07714 atoC; two-component system, NtrC family, response regulator AtoC D Plim_3050 PAS sensor protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D Plim_0237 ATP-binding region ATPase domain protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Plim_2085 ATP-binding region ATPase domain protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Plim_3849 ATP-binding region ATPase domain protein K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Plim_1906 ATP-binding region ATPase domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Plim_1910 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Plim_2874 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Plim_1911 Protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Plim_1651 PAS sensor protein K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D Plim_3060 response regulator receiver K19623 phcQ; two-component system, probable response regulator PhcQ D Plim_2510 Hpt domain protein K20976 hptB; histidine phosphotransfer protein HptB D Plim_3367 response regulator receiver K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D Plim_2762 PAS sensor protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 02035 Bacterial motility proteins [BR:plm02035] D Plim_1906 ATP-binding region ATPase domain protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Plim_1907 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D Plim_2875 CheC domain protein K03409 cheX; chemotaxis protein CheX D Plim_0811 chemotaxis protein CheX, putative K03409 cheX; chemotaxis protein CheX D Plim_1912 Protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Plim_1911 Protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Plim_1910 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Plim_2874 response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Plim_1909 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Plim_3097 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Plim_3098 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Plim_3099 hypothetical protein K02413 fliJ; flagellar protein FliJ D Plim_4068 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D Plim_4067 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Plim_4066 export protein FliQ family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Plim_4065 type III secretion system inner membrane R protein K02421 fliR; flagellar biosynthesis protein FliR D Plim_1138 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Plim_1391 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Plim_3096 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Plim_2500 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Plim_4069 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Plim_4041 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Plim_3095 secretory protein YscJ/FliF family protein K02409 fliF; flagellar M-ring protein FliF D Plim_2706 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Plim_2704 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D Plim_2705 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Plim_3956 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Plim_3954 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Plim_3955 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Plim_3102 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Plim_2702 protein of unknown function DUF1078 domain protein K02391 flgF; flagellar basal-body rod protein FlgF D Plim_2703 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Plim_3682 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Plim_2709 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Plim_2711 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Plim_3505 protein of unknown function UPF0153 K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D Plim_3359 flagellin domain protein K02406 fliC; flagellin D Plim_1693 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Plim_1692 hypothetical protein K02422 fliS; flagellar secretion chaperone FliS D Plim_1142 RNA polymerase sigma factor, FliA/WhiG family K02405 fliA; RNA polymerase sigma factor FliA D Plim_2583 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Plim_4077 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Plim_2582 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Plim_1139 GTP-binding signal recognition particle SRP54 G-domain protein K02404 flhF; flagellar biosynthesis protein FlhF D Plim_1140 cobyrinic acid a,c-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG D Plim_1933 twitching motility protein K02669 pilT; twitching motility protein PilT D Plim_0409 twitching motility protein K02669 pilT; twitching motility protein PilT D Plim_0408 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D Plim_0410 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D Plim_0426 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D Plim_4189 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D Plim_0407 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Plim_0425 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Plim_1294 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Plim_1574 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Plim_1841 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Plim_3281 type II and III secretion system protein K02666 pilQ; type IV pilus assembly protein PilQ D Plim_3285 Tfp pilus assembly protein ATPase PilM-like protein K02662 pilM; type IV pilus assembly protein PilM D Plim_0798 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Plim_0875 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Plim_0796 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Plim_1819 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Plim_1817 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Plim_0795 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Plim_3839 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Plim_0794 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Plim_0793 response regulator receiver K02282 cpaE; pilus assembly protein CpaE D Plim_1918 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Plim_1815 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:plm04812] D Plim_2620 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Plim_1318 Cobyrinic acid ac-diamide synthase K03609 minD; septum site-determining protein MinD D Plim_1365 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Plim_2897 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:plm04147] D Plim_1779 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D Plim_1800 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Plim_2603 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Plim_0647 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Plim_1252 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Plim_3274 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Plim_3119 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Plim_2477 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Plim_2926 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2928 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2524 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Plim_2047 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Plim_2333 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_1501 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_3585 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Plim_3994 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Plim_2538 Dipeptidyl-peptidase IV K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Plim_3912 peptidase S9 prolyl oligopeptidase active site domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Plim_3928 Gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D Plim_2162 SMP-30/Gluconolaconase/LRE domain protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D Plim_3508 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Plim_0435 translation elongation factor Tu K02358 tuf; elongation factor Tu D Plim_2973 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Plim_1746 Lactate/malate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Plim_1203 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Plim_2103 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D Plim_3615 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Plim_2965 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Plim_0733 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Plim_3653 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Plim_1940 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Plim_4163 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Plim_0413 glycoside hydrolase family 13 domain protein K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Plim_2229 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Plim_2002 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Plim_0683 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_1921 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Plim_1546 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Plim_4232 transcriptional coactivator/pterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Plim_3159 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Plim_1680 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Plim_2827 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Plim_1423 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Plim_3309 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Plim_1200 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Plim_2049 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:plm02048] D Plim_1441 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Plim_1440 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D Plim_3147 CRISPR-associated helicase Cas3, Anaes-subtype K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Plim_3149 CRISPR-associated protein, GSU0053 family K19131 csb1; CRISPR-associated protein Csb1 D Plim_3150 CRISPR-associated protein, GSU0054 family K19132 csb2; CRISPR-associated protein Csb2 D Plim_3148 conserved hypothetical protein K19135 csx14; CRISPR-associated protein Csx14 D Plim_1217 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Plim_2656 EcoEI R domain protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Plim_1220 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Plim_2652 Restriction endonuclease S subunits-like protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Plim_1221 Site-specific DNA-methyltransferase (adenine-specific) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Plim_2651 Site-specific DNA-methyltransferase (adenine-specific) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Plim_4275 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Plim_3573 DNA methylase N-4/N-6 domain protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D Plim_2104 DNA methylase N-4/N-6 domain protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D Plim_4248 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D Plim_2491 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4 D Plim_3645 helix-turn-helix domain protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Plim_2987 PilT protein domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D Plim_2620 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Plim_2659 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Plim_3343 Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Plim_3794 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:plm04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:plm04090] D Plim_2538 Dipeptidyl-peptidase IV K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Plim_3912 peptidase S9 prolyl oligopeptidase active site domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] C 01504 Antimicrobial resistance genes [BR:plm01504] D Plim_1774 major facilitator superfamily MFS_1 K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D Plim_1016 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1 D Plim_1017 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Plim_2756 ATP-binding region ATPase domain protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D Plim_2852 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Plim_2293 efflux transporter, RND family, MFP subunit K18298 mexE; membrane fusion protein, multidrug efflux system D Plim_2294 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump D Plim_2295 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18299 mexF; multidrug efflux pump D Plim_1613 efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:plm00536] D Plim_2314 hypothetical protein K19720 COL3A; collagen type III alpha C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:plm00537] D Plim_3159 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Plim_2477 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:plm03100] D Plim_R0056 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Plim_R0068 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Plim_R0058 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Plim_R0034 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0048 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0013 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0041 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0043 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Plim_R0003 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Plim_R0005 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Plim_R0016 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Plim_R0050 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Plim_R0027 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Plim_R0060 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Plim_R0018 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Plim_R0006 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Plim_R0009 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Plim_R0053 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Plim_R0063 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Plim_R0020 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Plim_R0052 tRNA-His K14226 tRNA-His; tRNA His D Plim_R0022 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Plim_R0057 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Plim_R0051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0031 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0032 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0014 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0037 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0047 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0015 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Plim_R0035 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Plim_R0039 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Plim_R0002 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Plim_R0023 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Plim_R0021 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Plim_R0069 tRNA-Met K14230 tRNA-Met; tRNA Met D Plim_R0042 tRNA-Met K14230 tRNA-Met; tRNA Met D Plim_R0065 tRNA-Met K14230 tRNA-Met; tRNA Met D Plim_R0028 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Plim_R0067 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Plim_R0045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Plim_R0044 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Plim_R0026 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Plim_R0059 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Plim_R0062 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Plim_R0066 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Plim_R0010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Plim_R0012 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Plim_R0007 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Plim_R0011 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Plim_R0008 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Plim_R0001 tRNA-Val K14237 tRNA-Val; tRNA Val D Plim_R0017 tRNA-Val K14237 tRNA-Val; tRNA Val D Plim_R0061 tRNA-Val K14237 tRNA-Val; tRNA Val D Plim_R0033 tRNA-Val K14237 tRNA-Val; tRNA Val D Plim_R0024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Plim_R0046 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Plim_R0055 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Plim_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Plim_R0029 ffs; SRP RNA; RNA component of signal recognitionparti cle K01983 ffs; SRP RNA D Plim_R0064 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Plim_R0049 ssrA; tmRNA as predicted by Rfam (RF00023), score 155.35 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Plim_1635 3-beta hydroxysteroid dehydrogenase/isomerase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412] D Plim_0803 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D Plim_3453 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Plim_2822 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D Plim_3769 oxidoreductase molybdopterin binding protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D Plim_0026 Cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D Plim_0810 Cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D Plim_1247 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Plim_4209 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Plim_2520 Redoxin domain protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Plim_4080 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Plim_2534 Redoxin domain protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Plim_0807 alkylhydroperoxidase like protein, AhpD family K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D Plim_0808 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D Plim_0629 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D Plim_3813 oxidoreductase FAD/NAD(P)-binding domain protein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D Plim_3820 Stearoyl-CoA 9-desaturase K23036 desC2; sn-2 palmitoyl-lipid 9-desaturase [EC:1.14.19.27] D Plim_1896 Protein-tyrosine phosphatase, low molecular weight K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Plim_0186 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Plim_3940 macrocin-O-methyltransferase K05303 K05303; O-methyltransferase [EC:2.1.1.-] D Plim_4151 putative RNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D Plim_3232 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Plim_3685 GCN5-related N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D Plim_1300 glutamine cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5] D Plim_1293 transglutaminase domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D Plim_2238 transglutaminase domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D Plim_3323 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20] D Plim_0061 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D Plim_2253 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Plim_0905 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Plim_3767 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Plim_2338 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Plim_0071 phosphatidate cytidylyltransferase K18678 VTE5; phytol kinase [EC:2.7.1.182] D Plim_2324 (Glutamate--ammonia-ligase) adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D Plim_2043 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Plim_1190 protein of unknown function DUF147 K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D Plim_0763 ATP:guanido phosphotransferase K19405 mcsB; protein arginine kinase [EC:2.7.14.1] D Plim_0831 hypothetical protein K22905 stf3; omega-hydroxy-beta-dihydromenaquinone-9 sulfotransferase [EC:2.8.2.40] D Plim_2636 Sialate O-acetylesterase K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53] D Plim_1901 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D Plim_3314 hypothetical protein K25010 GE; (4-O-methyl)-D-glucuronate---lignin esterase [EC:3.1.1.117] D Plim_3458 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Plim_2936 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Plim_3504 Phosphoglycerate mutase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D Plim_2233 metal dependent phosphohydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D Plim_0679 response regulator receiver K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Plim_1567 sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6] D Plim_3632 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Plim_3031 N-acyl-D-amino-acid deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D Plim_0246 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Plim_1579 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D Plim_3879 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D Plim_3596 LmbE family protein K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D Plim_2396 LmbE family protein K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D Plim_1954 maf protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D Plim_1801 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Plim_1689 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Plim_1419 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Plim_4014 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Plim_2774 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Plim_0615 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Plim_2237 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Plim_3671 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Plim_3634 ATPase associated with various cellular activities AAA_5 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Plim_2592 Protein-tyrosine phosphatase, low molecular weight K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2] D Plim_2638 alpha/beta hydrolase fold protein K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114] D Plim_3799 Altronate dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5] D Plim_2185 conserved hypothetical protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D Plim_2400 protein of unknown function DUF111 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D Plim_1645 RbsD or FucU transport K02431 fucU; L-fucose mutarotase [EC:5.1.3.29] D Plim_0391 Xylose isomerase domain protein TIM barrel K18910 dpe; D-psicose/D-tagatose/L-ribulose 3-epimerase [EC:5.1.3.30 5.1.3.31] D Plim_2896 carbohydrate kinase, YjeF related protein K17759 NAXE; NAD(P)H-hydrate epimerase [EC:5.1.99.6] D Plim_3252 peptidylprolyl isomerase FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D Plim_3597 AMP-dependent synthetase and ligase K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1] D Plim_2671 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D Plim_2672 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D Plim_0263 ATPase, P-type (transporting), HAD superfamily, subfamily IC K12953 ctpF; cation-transporting P-type ATPase F [EC:7.2.2.-] C 99981 Carbohydrate metabolism D Plim_3622 protein of unknown function DUF224 cysteine-rich region domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D Plim_3623 protein of unknown function DUF162 K18929 lldF; L-lactate dehydrogenase complex protein LldF D Plim_3417 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D Plim_2617 4Fe-4S ferredoxin iron-sulfur binding domain protein K05524 fdxA; ferredoxin D Plim_0007 4Fe-4S ferredoxin iron-sulfur binding domain protein K05524 fdxA; ferredoxin D Plim_1321 nitrogen-fixing NifU domain protein K04488 iscU; nitrogen fixation protein NifU and related proteins C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Plim_0452 alanine racemase domain protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D Plim_3850 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D Plim_1029 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D Plim_1110 ABC-1 domain protein K03688 ubiB; ubiquinone biosynthesis protein D Plim_1508 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism C 99999 Others D Plim_0542 metallophosphoesterase K22390 ACP7; acid phosphatase type 7 D Plim_2974 metallophosphoesterase K22390 ACP7; acid phosphatase type 7 D Plim_3268 DoxX family protein K15977 K15977; putative oxidoreductase D Plim_0630 DoxX family protein K15977 K15977; putative oxidoreductase D Plim_0236 phospholipase/Carboxylesterase K06999 K06999; phospholipase/carboxylesterase B B 09192 Unclassified: genetic information processing C 99973 Transcription D Plim_2413 RNA binding S1 domain protein K06959 tex; protein Tex C 99974 Translation D Plim_1341 beta-lactamase domain protein K07576 K07576; metallo-beta-lactamase family protein D Plim_2916 mRNA 3'-end processing factor K07577 K07577; putative mRNA 3-end processing factor D Plim_0150 exonuclease of the beta-lactamase fold involved in RNA processing-like protein K07577 K07577; putative mRNA 3-end processing factor C 99975 Protein processing D Plim_0762 UvrB/UvrC protein K19411 mcsA; protein arginine kinase activator D Plim_3336 trigger factor K03545 tig; trigger factor D Plim_4169 SsrA-binding protein K03664 smpB; SsrA-binding protein D Plim_0159 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Plim_0730 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D Plim_2006 conserved hypothetical protein K07454 K07454; putative restriction endonuclease D Plim_3711 SMC domain protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D Plim_0460 protein of unknown function UPF0102 K07460 yraN; putative endonuclease D Plim_0049 DNA protecting protein DprA K04096 smf; DNA processing protein D Plim_0537 AAA ATPase central domain protein K07478 ycaJ; putative ATPase D Plim_3088 protein of unknown function DUF927 K06919 K06919; putative DNA primase/helicase D Plim_0041 conserved hypothetical protein K07501 K07501; 3'-5' exonuclease D Plim_0352 conserved hypothetical protein K07491 rayT; REP-associated tyrosine transposase D Plim_2531 transposase K07491 rayT; REP-associated tyrosine transposase D Plim_2607 protein of unknown function DUF1568 K07491 rayT; REP-associated tyrosine transposase D Plim_0885 protein of unknown function DUF1568 K07491 rayT; REP-associated tyrosine transposase C 99979 Viral proteins C 99998 Others D Plim_0315 PspA/IM30 family protein K03969 pspA; phage shock protein A D Plim_2922 protein of unknown function DUF450 K07504 K07504; predicted type IV restriction endonuclease D Plim_0693 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Plim_3386 amino acid permease-associated region K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D Plim_2886 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Plim_2851 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Plim_0559 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Plim_1248 TGF-beta receptor type I/II extracellular region K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D Plim_2816 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Plim_3448 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Plim_0955 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Plim_2261 sodium:dicarboxylate symporter K03309 TC.DAACS; dicarboxylate/amino acid:cation (Na+ or H+) symporter, DAACS family C 99978 Cell growth D Plim_2992 SpoVR family protein K06415 spoVR; stage V sporulation protein R C 99993 Cell motility C 99995 Signaling proteins D Plim_2325 UspA domain protein K14055 uspE; universal stress protein E D Plim_0148 carbon starvation protein CstA K06200 cstA; carbon starvation protein D Plim_1239 GTP-binding protein TypA K06207 typA; GTP-binding protein D Plim_2232 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Plim_3373 PhoH family protein K07175 phoH2; PhoH-like ATPase D Plim_2989 PrkA AAA domain protein K07180 prkA; serine protein kinase C 99992 Structural proteins D Plim_1397 hypothetical protein K05803 nlpI; lipoprotein NlpI D Plim_0471 secretion protein HlyD family protein K02005 ABC.CD.TX; HlyD family secretion protein D Plim_1596 secretion protein HlyD family protein K02005 ABC.CD.TX; HlyD family secretion protein D Plim_3483 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Plim_1115 secretion protein HlyD family protein K02005 ABC.CD.TX; HlyD family secretion protein C 99994 Others D Plim_1486 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D Plim_0888 periplasmic glucan biosynthesis protein MdoG K03670 mdoG; periplasmic glucans biosynthesis protein B B 09194 Poorly characterized C 99996 General function prediction only D Plim_2750 transport-associated protein K04065 osmY; hyperosmotically inducible periplasmic protein D Plim_0737 export-related chaperone CsaA K06878 K06878; tRNA-binding protein D Plim_1989 globin K06886 glbN; hemoglobin D Plim_0066 MMPL domain protein K06994 K06994; putative drug exporter of the RND superfamily D Plim_4115 HAD-superfamily hydrolase, subfamily IA, variant 1 K07025 K07025; putative hydrolase of the HAD superfamily D Plim_2390 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D Plim_2391 FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D Plim_2533 ribonuclease BN K07058 K07058; membrane protein D Plim_0792 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA D Plim_0233 Fe-S metabolism associated SufE K02426 sufE; cysteine desulfuration protein SufE D Plim_2969 pseudouridine synthase, RluA family K07146 K07146; UPF0176 protein D Plim_3163 conserved hypothetical protein K03745 slyX; SlyX protein D Plim_2073 SNARE associated Golgi protein-like protein K03975 dedA; membrane-associated protein D Plim_2917 protein of unknown function DUF202 K00389 yidH; putative membrane protein C 99997 Function unknown D Plim_0015 metal-dependent phosphohydrolase HD sub domain protein K06885 K06885; uncharacterized protein D Plim_1180 protein of unknown function DUF255 K06888 K06888; uncharacterized protein D Plim_2384 Hydrolase of the alpha/beta superfamily-like protein K06889 K06889; uncharacterized protein D Plim_2421 conserved hypothetical protein K06889 K06889; uncharacterized protein D Plim_2532 conserved hypothetical protein K06889 K06889; uncharacterized protein D Plim_3438 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein K06889 K06889; uncharacterized protein D Plim_2022 protein of unknown function DUF201 K06913 K06913; uncharacterized protein D Plim_0560 CoA-binding domain protein K06929 K06929; uncharacterized protein D Plim_0830 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Plim_3260 hypothetical protein K06940 K06940; uncharacterized protein D Plim_4133 GTP-binding protein HSR1-related protein K06946 K06946; uncharacterized protein D Plim_3005 metal-dependent phosphohydrolase HD sub domain protein K06950 K06950; uncharacterized protein D Plim_2419 hypothetical protein K06950 K06950; uncharacterized protein D Plim_0355 metallophosphoesterase K06953 K06953; uncharacterized protein D Plim_2270 protein of unknown function DUF901 K06962 K06962; uncharacterized protein D Plim_4105 peptidase membrane zinc metallopeptidase putative K06973 K06973; uncharacterized protein D Plim_3646 conserved hypothetical protein K06996 K06996; uncharacterized protein D Plim_0048 integral membrane protein K07003 K07003; uncharacterized protein D Plim_3348 hopanoid biosynthesis associated RND transporter like protein HpnN K07003 K07003; uncharacterized protein D Plim_3300 exporter of the RND superfamily protein-like protein K07003 K07003; uncharacterized protein D Plim_1021 exporter of the RND superfamily protein-like protein K07003 K07003; uncharacterized protein D Plim_1657 alpha/beta hydrolase fold protein K07019 K07019; uncharacterized protein D Plim_1549 TatD-related deoxyribonuclease K07051 K07051; uncharacterized protein D Plim_0961 domain of unknown function DUF1731 K07071 K07071; uncharacterized protein D Plim_1109 NAD-dependent epimerase/dehydratase K07071 K07071; uncharacterized protein D Plim_3694 protein of unknown function DUF897 K07086 K07086; uncharacterized protein D Plim_2236 permease K07089 K07089; uncharacterized protein D Plim_1182 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Plim_1475 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Plim_1399 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Plim_2910 metallophosphoesterase K07098 K07098; uncharacterized protein D Plim_0731 nuclear protein SET K07117 K07117; uncharacterized protein D Plim_1352 short-chain dehydrogenase/reductase SDR K07124 K07124; uncharacterized protein D Plim_0661 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Plim_3358 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein D Plim_0030 protein of unknown function DUF164 K07164 K07164; uncharacterized protein D Plim_1541 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Plim_2219 protein of unknown function DUF151 K08999 K08999; uncharacterized protein D Plim_2424 protein of unknown function DUF447 K09154 K09154; uncharacterized protein D Plim_0279 protein of unknown function DUF711 K09157 K09157; uncharacterized protein D Plim_0576 protein of unknown function DUF493 K09158 K09158; uncharacterized protein D Plim_1646 protein of unknown function DUF188 K09768 K09768; uncharacterized protein D Plim_2990 protein of unknown function DUF444 K09786 K09786; uncharacterized protein D Plim_2214 conserved hypothetical protein K09790 K09790; uncharacterized protein D Plim_1668 conserved hypothetical protein K09859 K09859; uncharacterized protein D Plim_3384 protein of unknown function DUF329 K09862 K09862; uncharacterized protein D Plim_0712 conserved hypothetical protein K09915 K09915; uncharacterized protein D Plim_4034 protein of unknown function DUF486 K09922 K09922; uncharacterized protein D Plim_3267 protein of unknown function DUF692 K09930 K09930; uncharacterized protein D Plim_1684 conserved hypothetical protein K09940 K09940; uncharacterized protein D Plim_0167 hypothetical protein K09942 K09942; uncharacterized protein D Plim_2665 protein of unknown function DUF1348 K09958 K09958; uncharacterized protein D Plim_1977 conserved hypothetical protein K09966 K09966; uncharacterized protein D Plim_1382 glycosyl hydrolase K09992 K09992; uncharacterized protein D Plim_2803 membrane-bound dehydrogenase domain protein K09992 K09992; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 19, 2024