+E Ribosome biogenesis KO
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Ribosome Biogenesis - Paracoccus marcusii
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D CP157_02768 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C CP157_02767 era; GTPase Era K03595 era; GTPase
C CP157_01681 cgtA; GTPase Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C CP157_01504 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
C CP157_02709 nusA; Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C CP157_02255 nusB; Transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C CP157_00523 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D CP157_02594 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CP157_00233 rsmB_1; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CP157_01456 rsmB_2; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CP157_01788 rsmC_1; Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D CP157_02676 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D CP157_02834 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CP157_00649 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CP157_02134 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D CP157_00518 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CP157_01922 rlmE; Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D CP157_02940 rlmH; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CP157_01972 rlmI; Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D CP157_00643 rlmJ; Ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D CP157_00204 rlmN; Dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CP157_02696 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D CP157_00220 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CP157_00683 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CP157_02439 rluC; Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D CP157_01598 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C CP157_00480 rimI; Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C CP157_00614 ydaF; Putative ribosomal N-acetyltransferase YdaF K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C CP157_00628 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C CP157_00379 rimO; Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C CP157_02832 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C CP157_02768 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C CP157_02092 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C CP157_00449 yrrK; Putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C CP157_01367 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C CP157_02767 era; GTPase Era K03595 era; GTPase
C CP157_00205 rsgA; Small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C CP157_00459 der; GTPase Der K03977 engA; GTPase
C CP157_01681 cgtA; GTPase Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C CP157_00703 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C CP157_02810 ywlC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C CP157_02505 rsh; GTP pyrophosphokinase rsh K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C CP157_00117 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C CP157_02708 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C CP157_02941 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
C CP157_01535 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
C CP157_00349 yvyD; Ribosome hibernation promotion factor K05808 hpf; ribosome hibernation promoting factor
C CP157_01794 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024