+D GENES KO
#
KEGG Orthology (KO) - Parabacteroides merdae
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pmer00010]
D INE87_01952 glcK; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D INE87_01423 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D INE87_00719 pfkA_1; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_01974 pfkA_2; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_02485 pfkA2; ATP-dependent 6-phosphofructokinase 2 K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D INE87_01524 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D INE87_01478 fbp; Fructose-1,6-bisphosphatase class 3 K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D INE87_01397 fbaB_2; Fructose-bisphosphate aldolase class 1 K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D INE87_01586 fda; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D INE87_02296 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D INE87_01623 gapA; Glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D INE87_01167 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D INE87_00722 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D INE87_02992 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D INE87_01484 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D INE87_03211 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D INE87_02969 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D INE87_00817 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_01039 Pyruvate:ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D INE87_00121 korA_1; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D INE87_02453 korA_2; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D INE87_00119 korB_1; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D INE87_02452 korB_2; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D INE87_01878 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D INE87_01212 mro_1; Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D INE87_01965 mro_2; Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D INE87_01132 D-ribitol-5-phosphate phosphatase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D INE87_03723 pgcA; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D INE87_02449 pckA; Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:pmer00020]
D INE87_00969 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D INE87_00971 acnA; Aconitate hydratase A K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D INE87_00970 icd; Isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D INE87_00498 pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_00121 korA_1; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D INE87_02453 korA_2; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D INE87_00119 korB_1; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D INE87_02452 korB_2; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D INE87_00118 padE; NADH-dependent phenylglyoxylate dehydrogenase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D INE87_00122 4Fe-4S binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D INE87_02845 frdA; Fumarate reductase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D INE87_02846 frdB; Fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D INE87_02844 sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D INE87_02352 fumA; Fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D INE87_00517 mdh_1; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D INE87_03610 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D INE87_02290 cfiA_2; 2-oxoglutarate carboxylase large subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D INE87_02449 pckA; Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D INE87_01039 Pyruvate:ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:pmer00030]
D INE87_01423 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D INE87_01198 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D INE87_01197 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D INE87_01811 pgl_2; 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D INE87_00737 pgl_1; 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D INE87_01199 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D INE87_00212 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D INE87_01216 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D INE87_02201 tal; Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D INE87_01217 rpiB; Ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D INE87_02652 DeoC/LacD family aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D INE87_01208 rbsK; Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D INE87_03723 pgcA; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D INE87_01933 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D INE87_02799 eda; Putative KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D INE87_02800 pfkB family carbohydrate kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D INE87_01397 fbaB_2; Fructose-bisphosphate aldolase class 1 K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D INE87_01586 fda; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D INE87_01478 fbp; Fructose-1,6-bisphosphatase class 3 K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D INE87_00719 pfkA_1; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_01974 pfkA_2; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_02485 pfkA2; ATP-dependent 6-phosphofructokinase 2 K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D INE87_01524 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:pmer00040]
D INE87_00353 Cupin domain protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D INE87_03138 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D INE87_02798 uxaC; Uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D INE87_02743 uxaB; Altronate oxidoreductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D INE87_02742 uxaA; Altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D INE87_03601 uxuA; Mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D INE87_00407 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D INE87_02404 tuaD; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D INE87_00212 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D INE87_02627 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D INE87_00138 xylB; Xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D INE87_00139 xylA; Xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D INE87_00461 rhaB; L-Rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D INE87_00464 rhaD; Rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D INE87_00397 hypothetical protein K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
C 00051 Fructose and mannose metabolism [PATH:pmer00051]
D INE87_01403 pfkB_1; ATP-dependent 6-phosphofructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D INE87_02721 scrK; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D INE87_02877 pfkB_2; ATP-dependent 6-phosphofructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D INE87_01382 manA; Mannose-6-phosphate isomerase ManA K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D INE87_03939 manC1; Mannose-1-phosphate guanylyltransferase 1 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D INE87_00216 algC; Phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D INE87_02887 rfbM_2; Mannose-1-phosphate guanylyltransferase RfbM K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D INE87_01057 rfbM_1; Mannose-1-phosphate guanylyltransferase RfbM K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D INE87_00075 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D INE87_00074 fcl; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D INE87_00462 rhaA; L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D INE87_00461 rhaB; L-Rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D INE87_00464 rhaD; Rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D INE87_00719 pfkA_1; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_01974 pfkA_2; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_02485 pfkA2; ATP-dependent 6-phosphofructokinase 2 K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D INE87_01524 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D INE87_01478 fbp; Fructose-1,6-bisphosphatase class 3 K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D INE87_00139 xylA; Xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D INE87_01397 fbaB_2; Fructose-bisphosphate aldolase class 1 K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D INE87_01586 fda; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D INE87_02296 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D INE87_01217 rpiB; Ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:pmer00052]
D INE87_01212 mro_1; Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D INE87_01965 mro_2; Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D INE87_01214 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D INE87_01718 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D INE87_03723 pgcA; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D INE87_01952 glcK; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D INE87_00352 lacZ_1; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_01138 Putative beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_01385 Putative beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_01699 ebgA_1; Evolved beta-galactosidase subunit alpha K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02051 Putative beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02120 lacZ_2; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02698 Glycosyl hydrolases family 2, TIM barrel domain K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02704 Glycosyl hydrolases family 2, TIM barrel domain K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_03560 lacZ_3; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_03878 Beta-galactosidase BoGH2A K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_03899 ebgA_2; Evolved beta-galactosidase subunit alpha K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02695 Glycosyl hydrolases family 35 K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D INE87_01081 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D INE87_00646 agaA; Alpha-galactosidase AgaA K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D INE87_00719 pfkA_1; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_01974 pfkA_2; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_02485 pfkA2; ATP-dependent 6-phosphofructokinase 2 K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D INE87_02701 D-galactonate dehydratase family member K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D INE87_00045 Glycosyl hydrolases family 31 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D INE87_00184 Retaining alpha-galactosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D INE87_01941 Retaining alpha-galactosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D INE87_01942 Retaining alpha-galactosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D INE87_02772 yicI; Alpha-xylosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism
D INE87_00407 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D INE87_02404 tuaD; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:pmer00500]
D INE87_00045 Glycosyl hydrolases family 31 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D INE87_00184 Retaining alpha-galactosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D INE87_01941 Retaining alpha-galactosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D INE87_01942 Retaining alpha-galactosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D INE87_02772 yicI; Alpha-xylosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D INE87_01381 xyl3A; Xylan 1,4-beta-xylosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D INE87_03053 Glycosyl hydrolase family 3 C-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D INE87_03129 Endoglucanase C307 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D INE87_00003 glgA; Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D INE87_01383 glgB; 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D INE87_00717 glgP_1; Glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D INE87_03740 glgP_2; Glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D INE87_03933 Glycosyl hydrolase family 57 K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1]
D INE87_01896 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D INE87_03723 pgcA; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D INE87_01952 glcK; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D INE87_01423 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D INE87_01403 pfkB_1; ATP-dependent 6-phosphofructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D INE87_02721 scrK; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D INE87_02877 pfkB_2; ATP-dependent 6-phosphofructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pmer00520]
D INE87_00107 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_00613 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02122 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02501 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02707 exoI; Beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03042 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03076 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03108 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_01687 nagA_2; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D INE87_01688 nagA_3; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D INE87_02565 nagA_4; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D INE87_01686 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D INE87_02087 nagB; Glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D INE87_02564 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D INE87_01403 pfkB_1; ATP-dependent 6-phosphofructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D INE87_02721 scrK; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D INE87_02877 pfkB_2; ATP-dependent 6-phosphofructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D INE87_01810 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D INE87_01750 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D INE87_00181 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D INE87_02674 ce; Cellobiose 2-epimerase K01787 RENBP; N-acylglucosamine 2-epimerase [EC:5.1.3.8]
D INE87_02675 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D INE87_01504 wecB_1; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D INE87_01600 wecB_2; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D INE87_01592 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D INE87_02436 Oxidoreductase family, NAD-binding Rossmann fold K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D INE87_02437 wbpE; UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D INE87_03224 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-D-glucuronate N-acetyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D INE87_03953 wbgU; UDP-N-acetylglucosamine 4-epimerase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
D INE87_02457 wbpA_1; UDP-N-acetyl-D-glucosamine 6-dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D INE87_03952 wbpA_2; UDP-N-acetyl-D-glucosamine 6-dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D INE87_00421 capD; UDP-glucose 4-epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D INE87_01472 abf2; Intracellular exo-alpha-L-arabinofuranosidase 2 K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D INE87_01952 glcK; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D INE87_03723 pgcA; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D INE87_00407 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D INE87_02404 tuaD; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D INE87_01214 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D INE87_01718 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D INE87_01081 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D INE87_01423 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D INE87_01382 manA; Mannose-6-phosphate isomerase ManA K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D INE87_00216 algC; Phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D INE87_02887 rfbM_2; Mannose-1-phosphate guanylyltransferase RfbM K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D INE87_01057 rfbM_1; Mannose-1-phosphate guanylyltransferase RfbM K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D INE87_03939 manC1; Mannose-1-phosphate guanylyltransferase 1 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D INE87_00075 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D INE87_00074 fcl; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D INE87_01603 L-fucokinase K25314 FKGP; fucokinase / fucose-1-phosphate guanylyltransferase [EC:2.7.1.52 2.7.7.30]
C 00620 Pyruvate metabolism [PATH:pmer00620]
D INE87_01878 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D INE87_01039 Pyruvate:ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D INE87_00121 korA_1; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D INE87_02453 korA_2; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D INE87_00119 korB_1; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D INE87_02452 korB_2; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_03069 pflB; Formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D INE87_02919 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D INE87_02918 pta; Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D INE87_02969 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D INE87_02255 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D INE87_00445 ldhA; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D INE87_00693 aldA; Lactaldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D INE87_01951 gloA; Lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D INE87_02137 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D INE87_01780 gloC; Hydroxyacylglutathione hydrolase GloC K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D INE87_01000 maeB; NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D INE87_01160 cfiA_1; 2-oxoglutarate carboxylase large subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D INE87_01413 gcdB_1; Glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D INE87_02291 gcdB_2; Glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D INE87_02289 Oxaloacetate decarboxylase, gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D INE87_02290 cfiA_2; 2-oxoglutarate carboxylase large subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D INE87_00517 mdh_1; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D INE87_03610 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D INE87_02352 fumA; Fumarate hydratase class I, aerobic K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D INE87_02449 pckA; Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D INE87_00817 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D INE87_03237 leuA_1; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pmer00630]
D INE87_01878 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D INE87_00517 mdh_1; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D INE87_03610 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D INE87_00969 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D INE87_00971 acnA; Aconitate hydratase A K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D INE87_01409 epi; Ethylmalonyl-CoA/methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D INE87_02253 pccB_2; Propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D INE87_01820 mutB; Methylmalonyl-CoA mutase large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D INE87_01821 Methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D INE87_03494 5'-nucleotidase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D INE87_00348 glnA_1; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_01937 glnA_2; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_03568 glnA_3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_00614 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D INE87_01781 gcvP; Glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D INE87_01490 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02736 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D INE87_02560 Xylose isomerase-like TIM barrel K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D INE87_01200 garK; Glycerate 2-kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D INE87_00693 aldA; Lactaldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D INE87_02799 eda; Putative KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D INE87_01293 hypothetical protein K01569 oxdD; oxalate decarboxylase [EC:4.1.1.2]
C 00640 Propanoate metabolism [PATH:pmer00640]
D INE87_01878 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D INE87_02919 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D INE87_02918 pta; Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D INE87_00497 Dehydrogenase E1 component K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_03069 pflB; Formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D INE87_02255 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D INE87_02253 pccB_2; Propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D INE87_01409 epi; Ethylmalonyl-CoA/methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D INE87_01820 mutB; Methylmalonyl-CoA mutase large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D INE87_01821 Methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D INE87_00715 mgsA_1; Methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D INE87_03241 mgsA_2; Methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D INE87_00508 yqhD; Alcohol dehydrogenase YqhD K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:pmer00650]
D INE87_01413 gcdB_1; Glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D INE87_02291 gcdB_2; Glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D INE87_01412 Biotin-requiring enzyme K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D INE87_02845 frdA; Fumarate reductase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D INE87_02846 frdB; Fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D INE87_02844 sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D INE87_02638 gadB; Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D INE87_03069 pflB; Formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D INE87_01039 Pyruvate:ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D INE87_00121 korA_1; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D INE87_02453 korA_2; 2-oxoglutarate oxidoreductase subunit KorA K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D INE87_00119 korB_1; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D INE87_02452 korB_2; 2-oxoglutarate oxidoreductase subunit KorB K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D INE87_03232 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D INE87_03233 ilvH; Putative acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:pmer00660]
D INE87_03232 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D INE87_03233 ilvH; Putative acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D INE87_03240 leuA_2; 2-isopropylmalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D INE87_03238 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D INE87_03239 leuD1; 3-isopropylmalate dehydratase small subunit 1 K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D INE87_03242 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:pmer00562]
D INE87_02266 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D INE87_00161 Myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D INE87_00176 Oxidoreductase family, C-terminal alpha/beta domain K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D INE87_02912 iolI; Inosose isomerase K06606 iolI; 2-keto-myo-inositol isomerase [EC:5.3.99.11]
D INE87_01683 iolU_2; scyllo-inositol 2-dehydrogenase (NADP(+)) IolU K22230 iolU; scyllo-inositol 2-dehydrogenase (NADP+) [EC:1.1.1.-]
D INE87_03516 Xylose isomerase-like TIM barrel K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D INE87_02296 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pmer00190]
D INE87_02845 frdA; Fumarate reductase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D INE87_02846 frdB; Fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D INE87_02844 sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D INE87_03008 appC; Cytochrome bd-II ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D INE87_03009 cydB; Cytochrome bd-I ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D INE87_02248 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D INE87_02241 atpD; ATP synthase subunit beta, sodium ion specific K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D INE87_02249 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D INE87_02247 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D INE87_02242 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D INE87_02244 ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D INE87_02246 atpF; ATP synthase subunit b, sodium ion specific K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D INE87_02245 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D INE87_00242 ntpA; V-type sodium ATPase catalytic subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D INE87_00243 ntpB; V-type sodium ATPase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D INE87_00244 ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D INE87_00240 Bacteriophage Mu Gam like protein K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D INE87_00245 V-type ATPase 116kDa subunit family protein K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D INE87_00246 ntpK; V-type sodium ATPase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D INE87_03219 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:pmer00680]
D INE87_00614 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D INE87_03211 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D INE87_00517 mdh_1; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D INE87_03610 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D INE87_01397 fbaB_2; Fructose-bisphosphate aldolase class 1 K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D INE87_01586 fda; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D INE87_01478 fbp; Fructose-1,6-bisphosphatase class 3 K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D INE87_00719 pfkA_1; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_01974 pfkA_2; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_02485 pfkA2; ATP-dependent 6-phosphofructokinase 2 K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D INE87_02919 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D INE87_02918 pta; Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D INE87_01878 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D INE87_00722 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D INE87_02992 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D INE87_01484 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D INE87_01721 Hydroxypyruvate reductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D INE87_01722 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D INE87_00650 serB2; Phosphoserine phosphatase SerB2 K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D INE87_01684 putative 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
C 00910 Nitrogen metabolism [PATH:pmer00910]
D INE87_03039 Nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D INE87_03537 gdhB; NAD-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D INE87_03547 gdhA; NAD(P)-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D INE87_00348 glnA_1; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_01937 glnA_2; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_03568 glnA_3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_00359 gltB; Ferredoxin-dependent glutamate synthase 1 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D INE87_00358 gltD_1; Glutamate synthase (NADPH) small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D INE87_02036 gltD_2; Glutamate synthase (NADPH) small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D INE87_01034 mtcA1; Beta-carbonic anhydrase 1 K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:pmer00920]
D INE87_00452 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D INE87_00451 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D INE87_00450 putative adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D INE87_00447 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D INE87_00214 nrnA; Bifunctional oligoribonuclease and PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D INE87_02235 Pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D INE87_00411 Bacterial transferase hexapeptide (six repeats) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D INE87_00698 Bacterial transferase hexapeptide (six repeats) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D INE87_02546 Bacterial transferase hexapeptide (six repeats) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D INE87_01127 cysK1; O-acetylserine sulfhydrylase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D INE87_01407 metAA; Homoserine O-acetyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:pmer00061]
D INE87_02255 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D INE87_02482 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D INE87_01025 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D INE87_01635 fabH_1; 3-oxoacyl-(acyl-carrier-protein) synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D INE87_03120 fabH_2; 3-oxoacyl-(acyl-carrier-protein) synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D INE87_03454 fabH_3; 3-oxoacyl-(acyl-carrier-protein) synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D INE87_02483 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D INE87_01634 fabG_1; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D INE87_03910 fabG_2; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D INE87_03716 UDP-3-O-acyl N-acetylglycosamine deacetylase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D INE87_02884 fabI; Enoyl-(acyl-carrier-protein) reductase (NADH) FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D INE87_01188 NADH:quinone reductase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D INE87_00532 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_00953 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_01884 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_02342 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D INE87_00532 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_00953 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_01884 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_02342 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:pmer00561]
D INE87_01200 garK; Glycerate 2-kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D INE87_00401 dhaK; PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D INE87_00402 dhaL-2; PEP-dependent dihydroxyacetone kinase 2, ADP-binding subunit DhaL K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D INE87_00196 glpK; Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D INE87_01906 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D INE87_00646 agaA; Alpha-galactosidase AgaA K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:pmer00564]
D INE87_01422 gpsA; Glycerol-3-phosphate dehydrogenase (NAD(P)+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D INE87_01906 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D INE87_03909 Cytidylyltransferase-like protein K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
D INE87_01858 Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D INE87_02852 Glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D INE87_03618 ugpQ; Glycerophosphodiester phosphodiesterase, cytoplasmic K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D INE87_01550 Cytidylyltransferase family protein K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D INE87_02949 CDP-alcohol phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D INE87_02948 Phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D INE87_00158 CDP-alcohol phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D INE87_00160 pgpA; Phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D INE87_02942 haloacid dehalogenase-like hydrolase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D INE87_03093 clsA; Major cardiolipin synthase ClsA K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:pmer00565]
D INE87_01858 Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:pmer00600]
D INE87_00352 lacZ_1; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_01138 Putative beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_01385 Putative beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_01699 ebgA_1; Evolved beta-galactosidase subunit alpha K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02051 Putative beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02120 lacZ_2; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02698 Glycosyl hydrolases family 2, TIM barrel domain K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02704 Glycosyl hydrolases family 2, TIM barrel domain K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_03560 lacZ_3; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_03878 Beta-galactosidase BoGH2A K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_03899 ebgA_2; Evolved beta-galactosidase subunit alpha K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_01848 Arylsulfatase K01130 E3.1.6.1; arylsulfatase [EC:3.1.6.1]
D INE87_02672 N-terminal domain of BNR-repeat neuraminidase K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D INE87_00646 agaA; Alpha-galactosidase AgaA K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D INE87_00107 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_00613 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02122 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02501 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02707 exoI; Beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03042 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03076 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03108 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D INE87_01858 Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D INE87_01858 Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:pmer00592]
D INE87_01858 Phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:pmer00230]
D INE87_00849 act; Methanol dehydrogenase activator K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D INE87_03723 pgcA; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D INE87_01933 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D INE87_00367 purF_1; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D INE87_01492 purF_2; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D INE87_02543 purD; Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D INE87_02481 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D INE87_01949 purT; Formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D INE87_03045 purL; Phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D INE87_03720 purM; Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D INE87_02735 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D INE87_03840 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D INE87_01990 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D INE87_00275 purH_1; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D INE87_01572 purH_2; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D INE87_02999 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D INE87_01343 punA; Purine nucleoside phosphorylase 1 K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D INE87_01706 Polyphenol oxidase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D INE87_01709 hpt; Hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D INE87_03856 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D INE87_02596 dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D INE87_01644 xpt; Xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D INE87_01432 guaA_1; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D INE87_01433 guaA_2; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D INE87_00630 guaD; Guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D INE87_01418 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D INE87_01897 Ribonucleotide reductase, barrel domain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D INE87_02250 nrdD; Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D INE87_02882 dgt; Deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D INE87_03024 spoT; Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D INE87_03252 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D INE87_01444 Inorganic triphosphatase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D INE87_03500 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D INE87_00641 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D INE87_01708 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D INE87_00132 HIT domain protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D INE87_00450 putative adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D INE87_00452 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D INE87_00451 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:pmer00240]
D INE87_00369 carB_1; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D INE87_02233 carB_2; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D INE87_00368 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D INE87_00379 pyrB; Aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D INE87_00378 pyrI; Aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D INE87_00198 allB; Allantoinase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D INE87_00645 pyrD_1; Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D INE87_01272 pyrD_2; Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D INE87_00644 pyrK; Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D INE87_01608 preA; NAD-dependent dihydropyrimidine dehydrogenase subunit PreA K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D INE87_02027 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D INE87_03718 pyrF; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D INE87_02875 pyrH; Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D INE87_00044 maf; dTTP/UTP pyrophosphatase K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D INE87_01654 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D INE87_01976 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D INE87_02740 Phosphoribulokinase / Uridine kinase family protein K00876 udk; uridine kinase [EC:2.7.1.48]
D INE87_02999 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D INE87_03707 udp; Uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D INE87_00179 upp; Uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D INE87_03722 Cytidine and deoxycytidylate deaminase zinc-binding region K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D INE87_02250 nrdD; Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D INE87_01897 Ribonucleotide reductase, barrel domain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D INE87_03929 Cytidine and deoxycytidylate deaminase zinc-binding region K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D INE87_02751 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D INE87_01966 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pmer00250]
D INE87_02167 Aspartate/prephenate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_03578 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_02584 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D INE87_01043 ansA_1; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D INE87_01226 ansA_2; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D INE87_01996 asnA; Aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D INE87_00357 asnB; Asparagine synthetase B (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D INE87_03744 yafV; Omega-amidase YafV K13566 NIT2; omega-amidase [EC:3.5.1.3]
D INE87_00972 asd_1; Bifunctional aspartate aminotransferase and L-aspartate beta-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12]
D INE87_02454 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D INE87_01863 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D INE87_02029 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D INE87_03500 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D INE87_01990 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D INE87_00379 pyrB; Aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D INE87_00378 pyrI; Aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D INE87_02638 gadB; Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D INE87_00359 gltB; Ferredoxin-dependent glutamate synthase 1 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D INE87_00358 gltD_1; Glutamate synthase (NADPH) small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D INE87_02036 gltD_2; Glutamate synthase (NADPH) small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D INE87_03537 gdhB; NAD-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D INE87_03547 gdhA; NAD(P)-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D INE87_01875 rocA; 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D INE87_00348 glnA_1; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_01937 glnA_2; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_03568 glnA_3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_00369 carB_1; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D INE87_02233 carB_2; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D INE87_00368 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D INE87_02639 glsA1; Glutaminase 1 K01425 glsA; glutaminase [EC:3.5.1.2]
D INE87_00367 purF_1; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D INE87_01492 purF_2; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:pmer00260]
D INE87_00854 lysC_1; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D INE87_03582 lysC_2; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D INE87_01483 thrA; Bifunctional aspartokinase/homoserine dehydrogenase 1 K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D INE87_02867 asd_2; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D INE87_01485 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D INE87_01647 ltaE; Low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D INE87_00614 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D INE87_01200 garK; Glycerate 2-kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D INE87_00722 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D INE87_02992 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D INE87_01484 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D INE87_01721 Hydroxypyruvate reductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D INE87_01722 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D INE87_00650 serB2; Phosphoserine phosphatase SerB2 K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D INE87_01310 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D INE87_01781 gcvP; Glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D INE87_01490 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02736 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D INE87_02949 CDP-alcohol phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D INE87_00391 tdcG; L-serine dehydratase TdcG K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D INE87_00062 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D INE87_00068 trpB_1; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D INE87_02864 trpB_2; Tryptophan synthase beta chain K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:pmer00270]
D INE87_00411 Bacterial transferase hexapeptide (six repeats) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D INE87_00698 Bacterial transferase hexapeptide (six repeats) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D INE87_02546 Bacterial transferase hexapeptide (six repeats) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D INE87_01127 cysK1; O-acetylserine sulfhydrylase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D INE87_00838 patB_1; Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D INE87_03230 patB_2; Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D INE87_01806 metH; Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D INE87_03152 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D INE87_01706 Polyphenol oxidase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D INE87_01344 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D INE87_01931 drdI; 5-deoxyribose 1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D INE87_00226 msrC; Free methionine-R-sulfoxide reductase K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D INE87_02381 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D INE87_00854 lysC_1; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D INE87_03582 lysC_2; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D INE87_01483 thrA; Bifunctional aspartokinase/homoserine dehydrogenase 1 K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D INE87_02867 asd_2; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D INE87_01407 metAA; Homoserine O-acetyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D INE87_01957 O-acetyl-L-homoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D INE87_02434 O-acetyl-L-homoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D INE87_01041 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D INE87_02167 Aspartate/prephenate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_03578 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_00972 asd_1; Bifunctional aspartate aminotransferase and L-aspartate beta-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12]
D INE87_00517 mdh_1; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D INE87_03610 mdh_2; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D INE87_00391 tdcG; L-serine dehydratase TdcG K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D INE87_01721 Hydroxypyruvate reductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D INE87_01722 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:pmer00280]
D INE87_01041 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D INE87_00497 Dehydrogenase E1 component K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02253 pccB_2; Propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15]
D INE87_01409 epi; Ethylmalonyl-CoA/methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D INE87_01820 mutB; Methylmalonyl-CoA mutase large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D INE87_01821 Methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pmer00290]
D INE87_03240 leuA_2; 2-isopropylmalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21]
D INE87_03238 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D INE87_03239 leuD1; 3-isopropylmalate dehydratase small subunit 1 K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D INE87_03242 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D INE87_03232 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D INE87_03233 ilvH; Putative acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D INE87_03235 Ketol-acid reductoisomerase (NAD(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D INE87_03231 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D INE87_01041 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D INE87_03237 leuA_1; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:pmer00300]
D INE87_00854 lysC_1; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D INE87_03582 lysC_2; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D INE87_01483 thrA; Bifunctional aspartokinase/homoserine dehydrogenase 1 K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D INE87_02867 asd_2; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D INE87_00457 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D INE87_02812 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D INE87_01865 lysJ; (LysW)-aminoadipate semialdehyde transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D INE87_00350 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D INE87_00330 dapL_1; LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D INE87_00349 dapL_2; LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D INE87_03581 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D INE87_02090 ddh; Meso-diaminopimelate D-dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16]
D INE87_02978 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D INE87_02915 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D INE87_02885 Alanine racemase, N-terminal domain K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
C 00310 Lysine degradation [PATH:pmer00310]
D INE87_00498 pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_01150 TIGR00238: KamA family protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
C 00220 Arginine biosynthesis [PATH:pmer00220]
D INE87_01863 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D INE87_02029 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D INE87_00935 Arginase family protein K01476 rocF; arginase [EC:3.5.3.1]
D INE87_02269 rocF; Arginase K01476 rocF; arginase [EC:3.5.3.1]
D INE87_02639 glsA1; Glutaminase 1 K01425 glsA; glutaminase [EC:3.5.1.2]
D INE87_00348 glnA_1; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_01937 glnA_2; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_03568 glnA_3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_03537 gdhB; NAD-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D INE87_03547 gdhA; NAD(P)-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D INE87_02167 Aspartate/prephenate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_03578 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_01733 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D INE87_01864 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D INE87_01865 lysJ; (LysW)-aminoadipate semialdehyde transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D INE87_02756 argE; Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:pmer00330]
D INE87_01796 speA; Biosynthetic arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D INE87_00338 N-carbamoyl-D-amino acid hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D INE87_00470 nspC; Carboxynorspermidine/carboxyspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D INE87_00990 speG; Spermidine N(1)-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D INE87_00935 Arginase family protein K01476 rocF; arginase [EC:3.5.3.1]
D INE87_02269 rocF; Arginase K01476 rocF; arginase [EC:3.5.3.1]
D INE87_02270 rocD2; Ornithine aminotransferase 2 K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D INE87_01872 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D INE87_01874 Proline dehydrogenase K00318 PRODH; proline dehydrogenase [EC:1.5.5.2]
D INE87_01875 rocA; 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D INE87_01879 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D INE87_01880 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D INE87_00975 pflD; Trans-4-hydroxy-L-proline dehydratase K23121 pflD; trans-4-hydroxy-L-proline dehydratase [EC:4.2.1.172]
D INE87_02167 Aspartate/prephenate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_03578 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:pmer00340]
D INE87_00680 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D INE87_03584 Phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D INE87_03586 hisA; 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D INE87_03587 Glutamine amidotransferase class-I K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D INE87_03585 hisF; Imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D INE87_00677 hisB; Histidine biosynthesis bifunctional protein HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D INE87_00678 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D INE87_01311 hisK; Histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D INE87_00679 hisD; Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D INE87_02072 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D INE87_02076 hutU; Urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D INE87_02074 hutI; Imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D INE87_02075 Glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2]
C 00350 Tyrosine metabolism [PATH:pmer00350]
D INE87_02167 Aspartate/prephenate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_03578 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_00678 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism [PATH:pmer00360]
D INE87_01021 Phenylacetate-coenzyme A ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D INE87_02731 paaI; Acyl-coenzyme A thioesterase PaaI K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D INE87_02167 Aspartate/prephenate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_03578 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_00678 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism
D INE87_00498 pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pmer00400]
D INE87_03030 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D INE87_02968 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D INE87_02455 aroK; Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D INE87_02794 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D INE87_03228 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D INE87_00067 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D INE87_00066 pabA; Aminodeoxychorismate/anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D INE87_00065 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D INE87_00063 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D INE87_00064 trpC; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D INE87_00062 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D INE87_00068 trpB_1; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D INE87_02864 trpB_2; Tryptophan synthase beta chain K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D INE87_00329 DAHP synthetase I family protein K04516 AROA1; chorismate mutase [EC:5.4.99.5]
D INE87_00331 pheA; Bifunctional chorismate mutase/prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D INE87_02167 Aspartate/prephenate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_03578 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_00678 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:pmer00410]
D INE87_00019 panD; Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D INE87_02638 gadB; Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D INE87_00018 panC; Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:pmer00430]
D INE87_02638 gadB; Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D INE87_02454 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D INE87_02918 pta; Phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D INE87_02919 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:pmer00440]
D INE87_02489 phnX; Phosphonoacetaldehyde hydrolase K05306 phnX; phosphonoacetaldehyde hydrolase [EC:3.11.1.1]
D INE87_02488 phnW; 2-aminoethylphosphonate--pyruvate transaminase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D INE87_00182 phnP; Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:pmer00450]
D INE87_00838 patB_1; Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D INE87_03230 patB_2; Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D INE87_01806 metH; Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D INE87_02118 sufS; Cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D INE87_03617 trxB; Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D INE87_00452 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D INE87_00451 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D INE87_02438 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:pmer00460]
D INE87_01381 xyl3A; Xylan 1,4-beta-xylosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D INE87_03053 Glycosyl hydrolase family 3 C-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D INE87_01043 ansA_1; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D INE87_01226 ansA_2; L-asparaginase 1 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D INE87_01996 asnA; Aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D INE87_00614 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:pmer00470]
D INE87_02885 Alanine racemase, N-terminal domain K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D INE87_02274 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D INE87_02639 glsA1; Glutaminase 1 K01425 glsA; glutaminase [EC:3.5.1.2]
D INE87_02008 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D INE87_02980 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D INE87_00350 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D INE87_03581 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:pmer00480]
D INE87_00681 Peptidase family M1 domain protein K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D INE87_02935 pepD_1; Cytosol non-specific dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D INE87_03476 PepT-like: peptidase T-like protein K01270 pepD; dipeptidase D [EC:3.4.13.-]
D INE87_03727 pepD_2; Cytosol non-specific dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D INE87_00970 icd; Isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D INE87_01199 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D INE87_01198 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:pmer00511]
D INE87_02672 N-terminal domain of BNR-repeat neuraminidase K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D INE87_00352 lacZ_1; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_01138 Putative beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_01385 Putative beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_01699 ebgA_1; Evolved beta-galactosidase subunit alpha K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02051 Putative beta-glucuronidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02120 lacZ_2; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02698 Glycosyl hydrolases family 2, TIM barrel domain K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_02704 Glycosyl hydrolases family 2, TIM barrel domain K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_03560 lacZ_3; Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_03878 Beta-galactosidase BoGH2A K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_03899 ebgA_2; Evolved beta-galactosidase subunit alpha K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D INE87_00107 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_00613 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02122 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02501 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02707 exoI; Beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03042 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03076 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03108 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_01322 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D INE87_02696 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D INE87_02838 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D INE87_02802 Glycosyl hydrolase family 65, N-terminal domain K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
D INE87_03130 Glycosyl hydrolase family 65, N-terminal domain K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
C 00540 Lipopolysaccharide biosynthesis [PATH:pmer00540]
D INE87_03715 lpxA_2; Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D INE87_03716 UDP-3-O-acyl N-acetylglycosamine deacetylase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D INE87_03717 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D INE87_02921 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D INE87_03000 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D INE87_03371 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D INE87_02722 kdsD; Arabinose 5-phosphate isomerase KdsD K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D INE87_01625 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D INE87_00043 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D INE87_01652 kpsU; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D INE87_03489 kdtA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D INE87_01887 Bacterial lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pmer00541]
D INE87_01718 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D INE87_01081 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D INE87_00407 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D INE87_02404 tuaD; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D INE87_00073 rffH; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D INE87_00191 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D INE87_00190 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D INE87_02866 rmlD_1; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D INE87_03081 rmlD_2; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D INE87_01382 manA; Mannose-6-phosphate isomerase ManA K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D INE87_03939 manC1; Mannose-1-phosphate guanylyltransferase 1 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D INE87_00216 algC; Phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D INE87_02887 rfbM_2; Mannose-1-phosphate guanylyltransferase RfbM K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D INE87_01057 rfbM_1; Mannose-1-phosphate guanylyltransferase RfbM K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D INE87_00075 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D INE87_00074 fcl; GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D INE87_01504 wecB_1; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D INE87_01600 wecB_2; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D INE87_01592 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D INE87_00421 capD; UDP-glucose 4-epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D INE87_00424 wbjC; UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase K19068 wbjC; UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase [EC:1.1.1.367]
D INE87_00425 wbpI; UDP-2,3-diacetamido-2,3-dideoxy-D-glucuronate 2-epimerase K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
D INE87_02457 wbpA_1; UDP-N-acetyl-D-glucosamine 6-dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D INE87_03952 wbpA_2; UDP-N-acetyl-D-glucosamine 6-dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D INE87_02436 Oxidoreductase family, NAD-binding Rossmann fold K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D INE87_02437 wbpE; UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D INE87_03224 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-D-glucuronate N-acetyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D INE87_03953 wbgU; UDP-N-acetylglucosamine 4-epimerase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
C 00550 Peptidoglycan biosynthesis [PATH:pmer00550]
D INE87_01750 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D INE87_00181 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D INE87_02983 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D INE87_02980 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D INE87_02978 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D INE87_02274 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D INE87_02915 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D INE87_02885 Alanine racemase, N-terminal domain K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D INE87_02012 uppS; Isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D INE87_03147 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D INE87_00483 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D INE87_02979 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D INE87_02982 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D INE87_00141 Transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D INE87_00195 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D INE87_00123 pbpC; Penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D INE87_01568 mrdA; Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D INE87_02977 spoVD; Stage V sporulation protein D K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D INE87_02419 dacB; D-alanyl-D-alanine carboxypeptidase DacB K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:pmer00552]
D INE87_03147 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D INE87_00483 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D INE87_01505 LicD family protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
D INE87_02398 LicD family protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:pmer00543]
D INE87_01599 wecG; UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D INE87_00411 Bacterial transferase hexapeptide (six repeats) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D INE87_00698 Bacterial transferase hexapeptide (six repeats) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D INE87_02546 Bacterial transferase hexapeptide (six repeats) K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:pmer00730]
D INE87_00831 thiC; Phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D INE87_00828 thiD; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D INE87_03365 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D INE87_00229 Thi4 family protein K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59]
D INE87_00829 Thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D INE87_00830 thiE; Thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D INE87_03372 thiL; Thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D INE87_02881 rsgA; Small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D INE87_00383 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D INE87_02147 thiN; Thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D INE87_01708 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:pmer00740]
D INE87_02166 ribBA; Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D INE87_02015 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D INE87_01719 D-ribitol-5-phosphate phosphatase K21063 K21063; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104]
D INE87_03922 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D INE87_01522 ribE; Riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D INE87_02757 ribF; Bifunctional riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D INE87_00849 act; Methanol dehydrogenase activator K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:pmer00750]
D INE87_01277 pdxK; Pyridoxine/pyridoxal/pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D INE87_02476 pdxB; Erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D INE87_01722 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D INE87_01458 pdxJ; Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D INE87_01485 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:pmer00760]
D INE87_02584 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D INE87_01340 Homoserine dehydrogenase, NAD binding domain K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21]
D INE87_02598 nadA; Quinolinate synthase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D INE87_03225 nadC; Nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D INE87_01343 punA; Purine nucleoside phosphorylase 1 K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D INE87_02999 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D INE87_01420 nadD; Nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D INE87_02190 NUDIX domain protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D INE87_00346 nadE; Glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D INE87_02311 cobB; NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D INE87_01456 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:pmer00770]
D INE87_03232 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D INE87_03233 ilvH; Putative acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D INE87_03235 Ketol-acid reductoisomerase (NAD(+)) K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D INE87_03231 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D INE87_01351 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D INE87_01278 Ketopantoate reductase PanE/ApbA K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D INE87_00018 panC; Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D INE87_00653 coaW; Type II pantothenate kinase K09680 PANK1_2_3; type II pantothenate kinase [EC:2.7.1.33]
D INE87_03900 coaX; Type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D INE87_00509 undec1A; Cysteine/Cysteine sulfinic acid decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D INE87_02407 coaD; Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D INE87_01557 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D INE87_01041 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D INE87_00019 panD; Aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:pmer00780]
D INE87_01744 bioC; Malonyl-(acyl-carrier protein) O-methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D INE87_02483 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D INE87_01634 fabG_1; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D INE87_03910 fabG_2; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D INE87_02884 fabI; Enoyl-(acyl-carrier-protein) reductase (NADH) FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D INE87_01743 hypothetical protein K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D INE87_01564 bioF_1; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D INE87_01742 bioF_2; 8-amino-7-oxononanoate synthase 2 K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D INE87_01741 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D INE87_01745 AAA domain protein K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D INE87_02955 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:pmer00785]
D INE87_00142 lipB; Octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D INE87_03216 lipA; Lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D INE87_00499 lplJ; Lipoate-protein ligase LplJ K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_00498 pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D INE87_00497 Dehydrogenase E1 component K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D INE87_01781 gcvP; Glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D INE87_01490 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D INE87_02736 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:pmer00790]
D INE87_02294 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D INE87_00383 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D INE87_01893 folB; Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D INE87_00050 sulD_1; Bifunctional folate synthesis protein K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D INE87_03150 sulD_2; Bifunctional folate synthesis protein K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D INE87_02916 folP; Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D INE87_01967 IS1595 family transposase ISSsu9 K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D INE87_00525 folC; Dihydrofolate synthase/folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D INE87_02166 ribBA; Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D INE87_00339 pabB; Aminodeoxychorismate synthase component 1 K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D INE87_00340 Amino-transferase class IV K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D INE87_00200 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D INE87_00199 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D INE87_03738 Queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D INE87_03737 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D INE87_00185 Metallo-beta-lactamase superfamily protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D INE87_00059 Radical SAM superfamily protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
C 00670 One carbon pool by folate [PATH:pmer00670]
D INE87_01967 IS1595 family transposase ISSsu9 K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D INE87_00964 fhs; Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D INE87_00022 folD; Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D INE87_02073 fchA; Methenyltetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D INE87_00614 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D INE87_02481 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D INE87_00275 purH_1; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D INE87_01572 purH_2; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D INE87_02075 Glutamate formimidoyltransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2]
D INE87_01006 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D INE87_01490 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D INE87_01806 metH; Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D INE87_01966 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D INE87_01042 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D INE87_03927 5-formyltetrahydrofolate cyclo-ligase family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pmer00860]
D INE87_03488 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D INE87_02554 Uroporphyrinogen-III synthase HemD K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D INE87_03551 hemN_2; Oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D INE87_03550 hemY; Protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D INE87_00963 cobI; Precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D INE87_00957 CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D INE87_00955 cbiET; Cobalamin biosynthesis bifunctional protein CbiET K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D INE87_01350 cbiA; Cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D INE87_02824 yvqK_2; Corrinoid adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D INE87_01349 yvqK_1; Corrinoid adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D INE87_00238 cobQ; Cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D INE87_02355 cobD_1; Cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D INE87_02357 cobP; Bifunctional adenosylcobalamin biosynthesis protein CobP K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D INE87_02359 cobS; Adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D INE87_02358 cobT; Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D INE87_02360 pspB; Putative phosphoserine phosphatase 2 K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D INE87_03263 cobD_2; Threonine-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pmer00130]
D INE87_03839 ubiE; Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D INE87_01126 chorismate binding enzyme K02361 entC; isochorismate synthase [EC:5.4.4.2]
D INE87_00260 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D INE87_00257 AMP-binding enzyme K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D INE87_00259 menB; 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D INE87_01464 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:pmer00900]
D INE87_03365 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D INE87_01747 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D INE87_02301 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D INE87_00521 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D INE87_02945 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D INE87_02734 GcpE protein K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D INE87_01975 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D INE87_01979 (2E,6E)-farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D INE87_02650 ispB; Octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D INE87_02012 uppS; Isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D INE87_01216 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:pmer00523]
D INE87_00073 rffH; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D INE87_00191 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D INE87_00190 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D INE87_02866 rmlD_1; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D INE87_03081 rmlD_2; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D INE87_01126 chorismate binding enzyme K02361 entC; isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D INE87_00191 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:pmer00946]
D INE87_01381 xyl3A; Xylan 1,4-beta-xylosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D INE87_03053 Glycosyl hydrolase family 3 C-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D INE87_00466 Alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
D INE87_01615 Alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
D INE87_01867 Bifunctional sulfatase/alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
D INE87_02548 Alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
D INE87_02914 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain protein K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:pmer00332]
D INE87_01879 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D INE87_01880 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:pmer00261]
D INE87_00452 cysN; Sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D INE87_00451 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D INE87_00854 lysC_1; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D INE87_03582 lysC_2; Lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D INE87_01483 thrA; Bifunctional aspartokinase/homoserine dehydrogenase 1 K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D INE87_02867 asd_2; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D INE87_00457 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D INE87_02812 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:pmer00521]
D INE87_01952 glcK; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D INE87_03723 pgcA; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D INE87_00161 Myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D INE87_02266 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D INE87_00176 Oxidoreductase family, C-terminal alpha/beta domain K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D INE87_00073 rffH; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D INE87_00191 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D INE87_00190 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D INE87_02866 rmlD_1; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D INE87_03081 rmlD_2; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D INE87_01952 glcK; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:pmer00525]
D INE87_00073 rffH; Glucose-1-phosphate thymidylyltransferase 2 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D INE87_00191 rffG; dTDP-glucose 4,6-dehydratase 2 K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:pmer00401]
D INE87_02167 Aspartate/prephenate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_03578 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_00678 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D INE87_00067 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D INE87_00066 pabA; Aminodeoxychorismate/anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D INE87_01025 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D INE87_01634 fabG_1; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D INE87_03910 fabG_2; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D INE87_02884 fabI; Enoyl-(acyl-carrier-protein) reductase (NADH) FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D INE87_02482 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:pmer00999]
D INE87_03152 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D INE87_01381 xyl3A; Xylan 1,4-beta-xylosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D INE87_03053 Glycosyl hydrolase family 3 C-terminal domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:pmer00362]
D INE87_00835 hypothetical protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D INE87_01413 gcdB_1; Glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D INE87_02291 gcdB_2; Glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D INE87_01412 Biotin-requiring enzyme K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pmer03020]
D INE87_01915 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D INE87_01914 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D INE87_03200 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pmer03010]
D INE87_03035 S1 RNA binding domain protein K02945 RP-S1; small subunit ribosomal protein S1
D INE87_02169 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D INE87_03180 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D INE87_03199 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D INE87_03191 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D INE87_01903 Ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D INE87_03171 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D INE87_03188 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D INE87_02170 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D INE87_03173 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D INE87_03198 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D INE87_03170 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D INE87_03197 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D INE87_03187 rpsN2; Alternate 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D INE87_02378 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D INE87_01231 Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D INE87_03183 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D INE87_01902 Ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D INE87_03178 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D INE87_02110 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D INE87_01930 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D INE87_01918 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D INE87_03177 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D INE87_03174 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D INE87_03175 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D INE87_03186 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D INE87_03189 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D INE87_01916 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D INE87_01901 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D INE87_01917 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D INE87_01919 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D INE87_02171 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D INE87_03184 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D INE87_03193 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D INE87_03181 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D INE87_03201 Ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D INE87_03190 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D INE87_03259 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D INE87_00106 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D INE87_01614 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D INE87_03179 Ribosomal protein L22p/L17e K02890 RP-L22; large subunit ribosomal protein L22
D INE87_03176 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D INE87_03185 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D INE87_01667 Ribosomal L25p family protein K02897 RP-L25; large subunit ribosomal protein L25
D INE87_01613 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D INE87_00503 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D INE87_03182 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D INE87_03192 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D INE87_01587 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D INE87_03119 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D INE87_00504 rpmG2; 50S ribosomal protein L33 2 K02913 RP-L33; large subunit ribosomal protein L33
D INE87_02277 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D INE87_00105 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D INE87_00033 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D INE87_00036 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D INE87_00037 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pmer00970]
D INE87_00035 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_01514 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_01839 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_01851 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_02331 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_03114 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_02106 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D INE87_00618 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D INE87_00619 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D INE87_00620 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D INE87_01797 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D INE87_02067 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D INE87_02068 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D INE87_02069 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D INE87_00987 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D INE87_03588 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D INE87_03589 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D INE87_00188 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D INE87_00189 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D INE87_02549 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D INE87_02109 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D INE87_02111 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D INE87_01337 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_02031 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_02033 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_01734 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_01925 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_03920 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_00024 tRNA-His K14226 tRNA-His; tRNA His
D INE87_00034 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_01515 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_01840 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_01852 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_02332 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_03113 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_02522 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_02888 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_01336 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_03505 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_02032 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_01335 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_00866 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D INE87_02421 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D INE87_01223 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D INE87_02340 tRNA-Met K14230 tRNA-Met; tRNA Met
D INE87_01637 tRNA-Met K14230 tRNA-Met; tRNA Met
D INE87_01642 tRNA-Met K14230 tRNA-Met; tRNA Met
D INE87_02163 tRNA-Met K14230 tRNA-Met; tRNA Met
D INE87_03321 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D INE87_03373 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D INE87_03031 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D INE87_00664 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D INE87_03320 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D INE87_00026 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_01156 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_01981 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_01157 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_01233 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_01395 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_00985 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D INE87_01493 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D INE87_01927 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D INE87_01922 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D INE87_03567 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D INE87_00986 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D INE87_01926 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D INE87_03921 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D INE87_01991 tRNA-Val K14237 tRNA-Val; tRNA Val
D INE87_01992 tRNA-Val K14237 tRNA-Val; tRNA Val
D INE87_01993 tRNA-Val K14237 tRNA-Val; tRNA Val
D INE87_03488 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D INE87_01194 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D INE87_03028 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D INE87_00109 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D INE87_01265 asnS_1; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D INE87_01988 asnS_2; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D INE87_02579 glyQS; Glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D INE87_00103 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D INE87_01611 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D INE87_02732 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D INE87_02438 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D INE87_01006 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D INE87_03515 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D INE87_02594 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D INE87_01804 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D INE87_01421 lysU; Lysine--tRNA ligase, heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D INE87_02084 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D INE87_01169 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D INE87_03502 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D INE87_01356 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D INE87_01374 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D INE87_02550 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D INE87_02212 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pmer03060]
D INE87_03194 secY; Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D INE87_01921 SecE/Sec61-gamma subunits of protein translocation complex K03073 secE; preprotein translocase subunit SecE
D INE87_03916 Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D INE87_02077 Protein export membrane protein K12257 secDF; SecD/SecF fusion protein
D INE87_01555 yajC; Sec translocon accessory complex subunit YajC K03210 yajC; preprotein translocase subunit YajC
D INE87_01653 60Kd inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D INE87_03896 SecA DEAD-like domain protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D INE87_00021 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D INE87_00471 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D INE87_01024 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D INE87_01023 Sec-independent protein translocase protein (TatC) K03118 tatC; sec-independent protein translocase protein TatC
D INE87_00101 lepB_1; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_01218 sipT; Signal peptidase I T K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_02225 lepB_2; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_02279 lepB_3; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_02813 Signal peptidase, peptidase S26 K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_02814 lepB_4; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_01802 Signal peptidase (SPase) II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pmer04122]
D INE87_01932 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D INE87_00059 Radical SAM superfamily protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
C 03050 Proteasome
C 03018 RNA degradation [PATH:pmer03018]
D INE87_03211 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D INE87_02351 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D INE87_00344 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D INE87_00114 cshA; ATP-dependent RNA helicase CshA K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D INE87_02745 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D INE87_02719 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D INE87_00149 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_00343 recQ_1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_00364 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_01014 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_03162 recQ_2; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_00113 Rho termination factor, RNA-binding domain K03628 rho; transcription termination factor Rho
D INE87_01700 rny; Ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D INE87_00719 pfkA_1; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_01974 pfkA_2; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_03822 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D INE87_03504 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D INE87_03219 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D INE87_03248 Poly A polymerase head domain protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pmer03030]
D INE87_00507 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D INE87_02314 polC; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D INE87_02173 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D INE87_03735 DNA polymerase III, delta subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D INE87_01044 DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D INE87_00642 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D INE87_00506 dnaN_1; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D INE87_00536 dnaN_2; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D INE87_00432 dnaC_1; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D INE87_00531 dnaC_2; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D INE87_02387 dnaC_3; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D INE87_01543 DNA primase catalytic core, N-terminal domain K02316 dnaG; DNA primase [EC:2.7.7.101]
D INE87_02386 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D INE87_03834 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04035 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04027 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_02456 rnhA; Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D INE87_02116 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D INE87_02649 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D INE87_00455 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:pmer03410]
D INE87_01358 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D INE87_01997 ung_1; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D INE87_03370 ung_2; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D INE87_03833 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D INE87_03590 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D INE87_00144 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D INE87_02204 Endonuclease/Exonuclease/phosphatase family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D INE87_01179 nfo; Endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D INE87_02649 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D INE87_01013 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D INE87_00455 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:pmer03420]
D INE87_00533 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D INE87_00219 uvrA_1; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D INE87_02873 uvrA_2; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D INE87_01629 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D INE87_02655 Tox-URI1 protein K03703 uvrC; excinuclease ABC subunit C
D INE87_00839 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D INE87_00943 helD; DNA helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D INE87_02649 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D INE87_00455 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:pmer03430]
D INE87_02626 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D INE87_01051 mutS2; Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D INE87_03169 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D INE87_00839 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D INE87_00943 helD; DNA helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D INE87_02303 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D INE87_02302 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D INE87_01013 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D INE87_03834 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04035 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04027 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_02173 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D INE87_00506 dnaN_1; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D INE87_00536 dnaN_2; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D INE87_03735 DNA polymerase III, delta subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D INE87_00642 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D INE87_01044 DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D INE87_00507 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D INE87_02314 polC; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D INE87_00455 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:pmer03440]
D INE87_01013 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D INE87_03834 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04035 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04027 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_03924 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D INE87_02107 Recombination protein O C terminal K03584 recO; DNA repair protein RecO (recombination protein O)
D INE87_00992 recR; Recombination protein RecR K06187 recR; recombination protein RecR
D INE87_00057 recA; Protein RecA K03553 recA; recombination protein RecA
D INE87_02649 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D INE87_03368 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D INE87_02682 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D INE87_03536 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D INE87_00591 SNF2 family N-terminal domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D INE87_00870 Putative ATP-dependent DNA helicase recG C-terminal K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D INE87_00921 Putative ATP-dependent DNA helicase recG C-terminal K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D INE87_02300 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D INE87_03782 Putative ATP-dependent DNA helicase recG C-terminal K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D INE87_02173 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D INE87_00506 dnaN_1; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D INE87_00536 dnaN_2; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D INE87_03735 DNA polymerase III, delta subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D INE87_00642 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D INE87_01044 DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D INE87_00507 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D INE87_02314 polC; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D INE87_03485 3'DNA-binding domain (3'BD) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:pmer02010]
D INE87_01732 modF; ABC transporter ATP-binding protein ModF K05776 modF; molybdate transport system ATP-binding protein
D INE87_01133 Bacterial extracellular solute-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D INE87_01134 Binding-protein-dependent transport system inner membrane component K11070 potC; spermidine/putrescine transport system permease protein
D INE87_01135 potB; Spermidine/putrescine transport system permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D INE87_01136 ABC transporter K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D INE87_03868 Substrate binding domain of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D INE87_03867 opuAB; Glycine betaine transport system permease protein OpuAB K02001 proW; glycine betaine/proline transport system permease protein
D INE87_03866 gbuA; Glycine betaine/carnitine transport ATP-binding protein GbuA K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D INE87_01899 MlaD protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D INE87_03155 mlaE; Intermembrane phospholipid transport system permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D INE87_03154 metN; Methionine import ATP-binding protein MetN K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D INE87_03040 pstS; Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D INE87_03135 Binding-protein-dependent transport system inner membrane component K02037 pstC; phosphate transport system permease protein
D INE87_03134 pstA1; Phosphate transport system permease protein PstA 1 K02038 pstA; phosphate transport system permease protein
D INE87_03133 pstB3; Phosphate import ATP-binding protein PstB 3 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D INE87_02521 znuA; High-affinity zinc uptake system binding-protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D INE87_02796 znuB; High-affinity zinc uptake system membrane protein ZnuB K09816 znuB; zinc transport system permease protein
D INE87_02520 ABC transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D INE87_02972 lolE_1; Lipoprotein-releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D INE87_03579 lolE_2; Lipoprotein-releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D INE87_02503 lolD; Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D INE87_02165 Lipopolysaccharide export system permease LptF/LptG K07091 lptF; lipopolysaccharide export system permease protein
D INE87_00270 Lipopolysaccharide export system permease LptF/LptG K11720 lptG; lipopolysaccharide export system permease protein
D INE87_03156 lptB; Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D INE87_03145 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D INE87_03583 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D INE87_03642 irtA; Iron import ATP-binding/permease protein IrtA K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D INE87_03643 putative ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D INE87_03127 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:pmer03070]
D INE87_01944 tolC_2; Outer membrane protein TolC K12340 tolC; outer membrane protein
D INE87_02413 oprM_4; Outer membrane protein OprM K12340 tolC; outer membrane protein
D INE87_02826 Outer membrane efflux protein K12340 tolC; outer membrane protein
D INE87_02077 Protein export membrane protein K12257 secDF; SecD/SecF fusion protein
D INE87_01921 SecE/Sec61-gamma subunits of protein translocation complex K03073 secE; preprotein translocase subunit SecE
D INE87_03916 Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D INE87_03194 secY; Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D INE87_01555 yajC; Sec translocon accessory complex subunit YajC K03210 yajC; preprotein translocase subunit YajC
D INE87_01653 60Kd inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D INE87_03896 SecA DEAD-like domain protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D INE87_00471 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D INE87_00021 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D INE87_01024 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D INE87_01023 Sec-independent protein translocase protein (TatC) K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pmer02020]
D INE87_02997 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D INE87_00383 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D INE87_03040 pstS; Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D INE87_01109 Barrel-sandwich domain of CusB or HlyD membrane-fusion K07798 cusB; membrane fusion protein, copper/silver efflux system
D INE87_01055 cusA_1; Cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D INE87_00856 kdpD; Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D INE87_00860 kdpA; Potassium-transporting ATPase potassium-binding subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D INE87_00859 kdpB; Potassium-transporting ATPase ATP-binding subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D INE87_00858 kdpC; Potassium-transporting ATPase KdpC subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit
D INE87_01898 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D INE87_00348 glnA_1; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_01937 glnA_2; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_03568 glnA_3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_00976 zraR_1; Transcriptional regulatory protein ZraR K07713 zraR; two-component system, NtrC family, response regulator HydG
D INE87_03653 zraR_6; Transcriptional regulatory protein ZraR K07713 zraR; two-component system, NtrC family, response regulator HydG
D INE87_03299 zraR_4; Transcriptional regulatory protein ZraR K07713 zraR; two-component system, NtrC family, response regulator HydG
D INE87_03785 zraR_7; Transcriptional regulatory protein ZraR K07713 zraR; two-component system, NtrC family, response regulator HydG
D INE87_02738 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D INE87_02639 glsA1; Glutaminase 1 K01425 glsA; glutaminase [EC:3.5.1.2]
D INE87_03008 appC; Cytochrome bd-II ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D INE87_03009 cydB; Cytochrome bd-I ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D INE87_01944 tolC_2; Outer membrane protein TolC K12340 tolC; outer membrane protein
D INE87_02413 oprM_4; Outer membrane protein OprM K12340 tolC; outer membrane protein
D INE87_02826 Outer membrane efflux protein K12340 tolC; outer membrane protein
D INE87_00438 Polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein
D INE87_01067 Polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein
D INE87_01510 Polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein
D INE87_03956 Polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein
D INE87_03486 Putative low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D INE87_00439 ptk_1; Tyrosine-protein kinase ptk K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_01509 Chain length determinant protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_01066 AAA domain protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_03955 ptk_2; Tyrosine-protein kinase ptk K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_01504 wecB_1; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D INE87_01600 wecB_2; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D INE87_01592 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D INE87_03129 Endoglucanase C307 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D INE87_00165 rpoE_1; ECF RNA polymerase sigma factor RpoE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02576 rpoE_6; ECF RNA polymerase sigma-E factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_00203 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_00205 sigE_1; ECF RNA polymerase sigma factor SigE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_03046 sigL_2; ECF RNA polymerase sigma factor SigL K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02211 sigE_2; ECF RNA polymerase sigma factor SigE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02906 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_03544 algU_1; RNA polymerase sigma-H factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_03253 rpoE_9; ECF RNA polymerase sigma factor RpoE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_01764 rpoE_4; ECF RNA polymerase sigma factor RpoE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02136 rpoE_5; ECF RNA polymerase sigma-E factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_00841 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02783 rpoE_7; ECF RNA polymerase sigma factor RpoE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_01762 rpoE_3; ECF RNA polymerase sigma factor RpoE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02493 putative RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_01331 rpoE_2; ECF RNA polymerase sigma-E factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02806 putative RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_03847 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02571 sigW_4; ECF RNA polymerase sigma factor SigW K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02958 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02054 sigW_3; ECF RNA polymerase sigma factor SigW K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02320 sigL_1; ECF RNA polymerase sigma factor SigL K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02927 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D INE87_00935 Arginase family protein K01476 rocF; arginase [EC:3.5.3.1]
D INE87_02269 rocF; Arginase K01476 rocF; arginase [EC:3.5.3.1]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pmer02024]
D INE87_00067 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D INE87_00066 pabA; Aminodeoxychorismate/anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D INE87_02638 gadB; Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D INE87_02641 gadC; Glutamate/gamma-aminobutyrate antiporter K20265 gadC; glutamate:GABA antiporter
D INE87_00403 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D INE87_00532 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_00953 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_01884 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_02342 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_02015 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D INE87_00040 oprM_1; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system
D INE87_01152 ttgF; Toluene efflux pump outer membrane protein TtgF K18139 oprM; outer membrane protein, multidrug efflux system
D INE87_01653 60Kd inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D INE87_02077 Protein export membrane protein K12257 secDF; SecD/SecF fusion protein
D INE87_01921 SecE/Sec61-gamma subunits of protein translocation complex K03073 secE; preprotein translocase subunit SecE
D INE87_03916 Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D INE87_03194 secY; Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D INE87_01555 yajC; Sec translocon accessory complex subunit YajC K03210 yajC; preprotein translocase subunit YajC
D INE87_03896 SecA DEAD-like domain protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D INE87_00471 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D INE87_00021 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D INE87_03874 OmpA family protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:pmer02040]
D INE87_03874 OmpA family protein K02557 motB; chemotaxis protein MotB
D INE87_01517 sigA; RNA polymerase sigma factor SigA K03086 rpoD; RNA polymerase primary sigma factor
D INE87_02738 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D INE87_03211 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:pmer04980]
D INE87_02824 yvqK_2; Corrinoid adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D INE87_01349 yvqK_1; Corrinoid adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D INE87_01972 putative GTPase K07588 MMAA; GTPase [EC:3.6.5.-]
D INE87_01820 mutB; Methylmalonyl-CoA mutase large subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D INE87_01821 Methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D INE87_01806 metH; Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:pmer01501]
D INE87_01814 ampG_1; Anhydromuropeptide permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D INE87_00251 BlaR1 peptidase M56 K02172 blaR1; bla regulator protein blaR1
D INE87_00468 Gram-negative bacterial TonB protein C-terminal K02172 blaR1; bla regulator protein blaR1
D INE87_02854 Tox-MPTase01 protein K02172 blaR1; bla regulator protein blaR1
D INE87_00250 mecI; Methicillin resistance regulatory protein MecI K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D INE87_02853 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D INE87_00038 bepD; Efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_00382 mexA_1; Multidrug resistance protein MexA K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_01154 bepF_2; Efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_02828 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_03605 mexA_2; Multidrug resistance protein MexA K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_02827 bepE_4; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D INE87_00039 bepG; Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D INE87_00040 oprM_1; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system
D INE87_01152 ttgF; Toluene efflux pump outer membrane protein TtgF K18139 oprM; outer membrane protein, multidrug efflux system
D INE87_01944 tolC_2; Outer membrane protein TolC K12340 tolC; outer membrane protein
D INE87_02413 oprM_4; Outer membrane protein OprM K12340 tolC; outer membrane protein
D INE87_02826 Outer membrane efflux protein K12340 tolC; outer membrane protein
D INE87_00195 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D INE87_01568 mrdA; Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D INE87_02977 spoVD; Stage V sporulation protein D K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:pmer01502]
D INE87_02274 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D INE87_02885 Alanine racemase, N-terminal domain K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D INE87_02915 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D INE87_02979 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D INE87_02982 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pmer01503]
D INE87_00850 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D INE87_01900 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D INE87_00038 bepD; Efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_00382 mexA_1; Multidrug resistance protein MexA K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_01154 bepF_2; Efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_02828 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_03605 mexA_2; Multidrug resistance protein MexA K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_02827 bepE_4; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D INE87_00039 bepG; Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D INE87_01944 tolC_2; Outer membrane protein TolC K12340 tolC; outer membrane protein
D INE87_02413 oprM_4; Outer membrane protein OprM K12340 tolC; outer membrane protein
D INE87_02826 Outer membrane efflux protein K12340 tolC; outer membrane protein
D INE87_03715 lpxA_2; Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pmer01000]
C 01001 Protein kinases [BR:pmer01001]
D INE87_03967 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D INE87_03972 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D INE87_04025 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D INE87_00655 rsbT; Serine/threonine-protein kinase RsbT K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D INE87_00701 Protein kinase domain protein K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1]
D INE87_00439 ptk_1; Tyrosine-protein kinase ptk K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_01509 Chain length determinant protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_01066 AAA domain protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_03955 ptk_2; Tyrosine-protein kinase ptk K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_02997 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D INE87_00856 kdpD; Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D INE87_01313 phoR; Alkaline phosphatase synthesis sensor protein PhoR K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D INE87_00610 Response regulator receiver domain protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:pmer01009]
D INE87_02381 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D INE87_00719 pfkA_1; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_01974 pfkA_2; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_00622 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D INE87_00702 Protein phosphatase 2C K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D INE87_00650 serB2; Phosphoserine phosphatase SerB2 K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:pmer01002]
D INE87_01802 Signal peptidase (SPase) II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D INE87_03491 pepE_2; Aminopeptidase E K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D INE87_01432 guaA_1; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D INE87_01433 guaA_2; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D INE87_01612 NlpC/P60 family protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D INE87_00367 purF_1; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D INE87_01492 purF_2; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D INE87_00359 gltB; Ferredoxin-dependent glutamate synthase 1 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D INE87_00357 asnB; Asparagine synthetase B (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D INE87_01462 yajL; Protein/nucleic acid deglycase 3 K03152 thiJ; protein deglycase [EC:3.5.1.124]
D INE87_03157 CPBP intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D INE87_00681 Peptidase family M1 domain protein K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D INE87_01187 dcp_1; Dipeptidyl carboxypeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D INE87_03930 dcp_2; Dipeptidyl carboxypeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D INE87_01471 pepO; Neutral endopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D INE87_02557 Peptidase M16 inactive domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D INE87_01491 pepT; Peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D INE87_03394 M42 glutamyl aminopeptidase K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D INE87_02935 pepD_1; Cytosol non-specific dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D INE87_03476 PepT-like: peptidase T-like protein K01270 pepD; dipeptidase D [EC:3.4.13.-]
D INE87_03727 pepD_2; Cytosol non-specific dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D INE87_01856 map_1; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D INE87_03195 map_2; Methionine aminopeptidase 1 K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D INE87_00651 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D INE87_03496 Creatinase/Prolidase N-terminal domain protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D INE87_01549 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D INE87_00385 Peptidase family M48 K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D INE87_01438 loiP; Metalloprotease LoiP K07387 K07387; metalloprotease [EC:3.4.24.-]
D INE87_03497 Peptidase family M49 K01277 DPP3; dipeptidyl-peptidase III [EC:3.4.14.4]
D INE87_01746 Putative zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D INE87_00251 BlaR1 peptidase M56 K02172 blaR1; bla regulator protein blaR1
D INE87_00468 Gram-negative bacterial TonB protein C-terminal K02172 blaR1; bla regulator protein blaR1
D INE87_02854 Tox-MPTase01 protein K02172 blaR1; bla regulator protein blaR1
D INE87_02363 Trypsin-like peptidase domain protein K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D INE87_02605 hypothetical protein K01337 E3.4.21.50; lysyl endopeptidase [EC:3.4.21.50]
D INE87_01869 dap4; Dipeptidyl aminopeptidase 4 K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D INE87_03215 ptpA_2; Prolyl tripeptidyl peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D INE87_02544 ptpA_1; Prolyl tripeptidyl peptidase K18574 ptpA; Xaa-Xaa-Pro tripeptidyl-peptidase [EC:3.4.14.12]
D INE87_02419 dacB; D-alanyl-D-alanine carboxypeptidase DacB K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D INE87_03160 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D INE87_01561 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D INE87_00101 lepB_1; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_01218 sipT; Signal peptidase I T K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_02225 lepB_2; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_02279 lepB_3; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_02813 Signal peptidase, peptidase S26 K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_02814 lepB_4; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D INE87_02065 Peptidase family S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D INE87_02408 Peptidase family S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D INE87_03928 Peptidase family S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D INE87_02315 putative tricorn protease K08676 tri; tricorn protease [EC:3.4.21.-]
D INE87_02321 putative tricorn protease K08676 tri; tricorn protease [EC:3.4.21.-]
D INE87_02860 sppA; Protease 4 K04773 sppA; protease IV [EC:3.4.21.-]
D INE87_02082 Rhomboid family protein K07059 K07059; rhomboid family protein
D INE87_02081 Rhomboid family protein K07059 K07059; rhomboid family protein
D INE87_02849 rlhA_2; 23S rRNA 5-hydroxycytidine synthase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D INE87_01406 rlhA_1; 23S rRNA 5-hydroxycytidine synthase K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
D INE87_00853 pmbA; Metalloprotease PmbA K03592 pmbA; PmbA protein
D INE87_00852 tldD; Metalloprotease TldD K03568 tldD; TldD protein
D INE87_00225 Bacterial macroglobulin domain 6 K06894 yfhM; alpha-2-macroglobulin
C 01003 Glycosyltransferases [BR:pmer01003]
D INE87_00608 ppm1; Polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D INE87_03945 pimB; GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346]
D INE87_00003 glgA; Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D INE87_00141 Transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D INE87_00123 pbpC; Penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D INE87_00195 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D INE87_01599 wecG; UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:pmer01005]
D INE87_03715 lpxA_2; Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D INE87_03000 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D INE87_03716 UDP-3-O-acyl N-acetylglycosamine deacetylase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D INE87_03717 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D INE87_02921 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D INE87_03371 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D INE87_01887 Bacterial lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D INE87_03489 kdtA; 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D INE87_01625 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D INE87_01652 kpsU; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D INE87_00043 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D INE87_02722 kdsD; Arabinose 5-phosphate isomerase KdsD K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D INE87_01203 putative glycosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pmer01011]
D INE87_01750 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D INE87_00181 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D INE87_02983 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D INE87_02980 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D INE87_02978 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D INE87_02885 Alanine racemase, N-terminal domain K01798 alr-murF; Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10]
D INE87_02274 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D INE87_02008 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D INE87_02979 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D INE87_02982 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D INE87_03147 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D INE87_00483 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D INE87_00195 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D INE87_00123 pbpC; Penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D INE87_01568 mrdA; Peptidoglycan D,D-transpeptidase MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D INE87_02977 spoVD; Stage V sporulation protein D K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D INE87_02419 dacB; D-alanyl-D-alanine carboxypeptidase DacB K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D INE87_00141 Transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D INE87_01612 NlpC/P60 family protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D INE87_03023 mltD; Membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D INE87_00660 mltF_2; Membrane-bound lytic murein transglycosylase F K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D INE87_00027 mltG; Endolytic murein transglycosylase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D INE87_00442 Lytic transglycosylase K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D INE87_00850 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D INE87_01900 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:pmer01004]
D INE87_01025 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D INE87_01635 fabH_1; 3-oxoacyl-(acyl-carrier-protein) synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D INE87_03120 fabH_2; 3-oxoacyl-(acyl-carrier-protein) synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D INE87_03454 fabH_3; 3-oxoacyl-(acyl-carrier-protein) synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D INE87_02483 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D INE87_01634 fabG_1; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D INE87_03910 fabG_2; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D INE87_03716 UDP-3-O-acyl N-acetylglycosamine deacetylase K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D INE87_02884 fabI; Enoyl-(acyl-carrier-protein) reductase (NADH) FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D INE87_01188 NADH:quinone reductase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D INE87_01878 acsA; Acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D INE87_00532 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_00953 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_01884 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_02342 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_01906 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:pmer01006]
D INE87_01979 (2E,6E)-farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D INE87_02650 ispB; Octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D INE87_02012 uppS; Isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D INE87_01624 miaA_1; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D INE87_03713 miaA_2; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D INE87_01464 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
C 01007 Amino acid related enzymes [BR:pmer01007]
D INE87_03488 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D INE87_01194 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D INE87_02550 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D INE87_02212 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D INE87_02732 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D INE87_02084 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D INE87_02438 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D INE87_01804 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D INE87_03515 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D INE87_02594 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D INE87_01421 lysU; Lysine--tRNA ligase, heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D INE87_00109 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D INE87_01265 asnS_1; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D INE87_01988 asnS_2; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D INE87_03502 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D INE87_02579 glyQS; Glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D INE87_01611 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D INE87_01169 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D INE87_00103 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D INE87_03028 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D INE87_01356 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D INE87_01374 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D INE87_02167 Aspartate/prephenate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_03578 aspC; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D INE87_00330 dapL_1; LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D INE87_00349 dapL_2; LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D INE87_00678 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D INE87_01310 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D INE87_01564 bioF_1; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D INE87_01742 bioF_2; 8-amino-7-oxononanoate synthase 2 K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D INE87_00838 patB_1; Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D INE87_03230 patB_2; Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D INE87_02270 rocD2; Ornithine aminotransferase 2 K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D INE87_01865 lysJ; (LysW)-aminoadipate semialdehyde transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D INE87_01741 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D INE87_01041 ilvE; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D INE87_02488 phnW; 2-aminoethylphosphonate--pyruvate transaminase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D INE87_01722 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D INE87_02437 wbpE; UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:pmer00194]
D INE87_02242 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D INE87_02241 atpD; ATP synthase subunit beta, sodium ion specific K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D INE87_02249 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D INE87_02248 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D INE87_02247 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D INE87_02246 atpF; ATP synthase subunit b, sodium ion specific K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D INE87_02245 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D INE87_02244 ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pmer03000]
D INE87_01111 helix-turn-helix protein domain protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D INE87_03989 helix-turn-helix protein domain protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D INE87_03251 exsA; Exoenzyme S synthesis regulatory protein ExsA K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D INE87_03312 rob; Right origin-binding protein K13652 K13652; AraC family transcriptional regulator
D INE87_00332 putative hydrogen peroxide-inducible activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D INE87_03603 Periplasmic binding protein domain protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D INE87_01987 asnC_1; Regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D INE87_02305 asnC_2; Regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D INE87_02435 decR; DNA-binding transcriptional activator DecR K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D INE87_02791 fur; Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D INE87_03499 Ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D INE87_01626 Transcriptional regulator LdrP K21556 malR; CRP/FNR family transcriptional regulator, polysaccharide utilization system transcription regulator
D INE87_02343 Transcriptional regulator PadR-like family protein K10947 K10947; PadR family transcriptional regulator
D INE87_00250 mecI; Methicillin resistance regulatory protein MecI K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D INE87_02853 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D INE87_02955 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D INE87_02938 rex; Redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D INE87_02862 Cro/C1-type HTH DNA-binding domain protein K07727 K07727; putative transcriptional regulator
D INE87_03806 helix-turn-helix protein K07729 K07729; putative transcriptional regulator
D INE87_01353 Putative nickel-responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D INE87_03021 PRTRC_parB: PRTRC system ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D INE87_01861 argR; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D INE87_00989 UPF0301 protein K07735 algH; putative transcriptional regulator
D INE87_01803 Prokaryotic dksA/traR C4-type zinc finger K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:pmer03021]
D INE87_03200 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D INE87_01915 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D INE87_01914 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D INE87_01517 sigA; RNA polymerase sigma factor SigA K03086 rpoD; RNA polymerase primary sigma factor
D INE87_01578 sigW_2; ECF RNA polymerase sigma factor SigW K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D INE87_02634 sigV; RNA polymerase sigma factor SigV K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D INE87_02773 Sigma-70, region 4 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D INE87_03037 sigW_5; ECF RNA polymerase sigma factor SigW K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D INE87_03506 sigW_6; ECF RNA polymerase sigma factor SigW K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D INE87_00165 rpoE_1; ECF RNA polymerase sigma factor RpoE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02576 rpoE_6; ECF RNA polymerase sigma-E factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_00203 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_00205 sigE_1; ECF RNA polymerase sigma factor SigE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_03046 sigL_2; ECF RNA polymerase sigma factor SigL K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02211 sigE_2; ECF RNA polymerase sigma factor SigE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02906 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_03544 algU_1; RNA polymerase sigma-H factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_03253 rpoE_9; ECF RNA polymerase sigma factor RpoE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_01764 rpoE_4; ECF RNA polymerase sigma factor RpoE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02136 rpoE_5; ECF RNA polymerase sigma-E factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_00841 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02783 rpoE_7; ECF RNA polymerase sigma factor RpoE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_01762 rpoE_3; ECF RNA polymerase sigma factor RpoE K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02493 putative RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_01331 rpoE_2; ECF RNA polymerase sigma-E factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02806 putative RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_03847 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02571 sigW_4; ECF RNA polymerase sigma factor SigW K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02958 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02054 sigW_3; ECF RNA polymerase sigma factor SigW K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02320 sigL_1; ECF RNA polymerase sigma factor SigL K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02927 Sigma-70, region 4 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D INE87_02738 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D INE87_02143 nusA; Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D INE87_01554 NusB family protein K03625 nusB; transcription antitermination protein NusB
D INE87_01920 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D INE87_00655 rsbT; Serine/threonine-protein kinase RsbT K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D INE87_03523 Stage II sporulation protein E (SpoIIE) K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D INE87_01803 Prokaryotic dksA/traR C4-type zinc finger K06204 dksA; RNA polymerase-binding transcription factor
D INE87_02349 greA; Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D INE87_00113 Rho termination factor, RNA-binding domain K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:pmer03019]
D INE87_03831 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D INE87_02484 Ribonuclease-III-like protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
D INE87_01700 rny; Ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D INE87_02745 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D INE87_00344 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D INE87_00114 cshA; ATP-dependent RNA helicase CshA K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D INE87_02719 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D INE87_00149 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_00343 recQ_1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_00364 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_01014 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_03162 recQ_2; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_03211 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D INE87_02351 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D INE87_00113 Rho termination factor, RNA-binding domain K03628 rho; transcription termination factor Rho
D INE87_00719 pfkA_1; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_01974 pfkA_2; ATP-dependent 6-phosphofructokinase 1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D INE87_03822 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D INE87_03504 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D INE87_03219 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D INE87_03248 Poly A polymerase head domain protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
C 03041 Spliceosome
C 03011 Ribosome [BR:pmer03011]
D INE87_03035 S1 RNA binding domain protein K02945 RP-S1; small subunit ribosomal protein S1
D INE87_02169 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D INE87_03180 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D INE87_03199 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D INE87_03191 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D INE87_01903 Ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D INE87_03171 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D INE87_03188 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D INE87_02170 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D INE87_03173 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D INE87_03198 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D INE87_03170 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D INE87_03197 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D INE87_03187 rpsN2; Alternate 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D INE87_02378 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D INE87_01231 Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D INE87_03183 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D INE87_01902 Ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D INE87_03178 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D INE87_02110 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D INE87_01930 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D INE87_01918 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D INE87_03177 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D INE87_03174 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D INE87_03175 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D INE87_03186 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D INE87_03189 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D INE87_01901 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D INE87_01917 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D INE87_01919 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D INE87_01916 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D INE87_02171 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D INE87_03184 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D INE87_03193 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D INE87_03181 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D INE87_03201 Ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D INE87_03190 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D INE87_03259 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D INE87_00106 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D INE87_01614 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D INE87_03179 Ribosomal protein L22p/L17e K02890 RP-L22; large subunit ribosomal protein L22
D INE87_03176 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D INE87_03185 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D INE87_01613 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D INE87_00503 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D INE87_03182 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D INE87_03192 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D INE87_01587 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D INE87_03119 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D INE87_00504 rpmG2; 50S ribosomal protein L33 2 K02913 RP-L33; large subunit ribosomal protein L33
D INE87_02277 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D INE87_00105 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D INE87_01667 Ribosomal L25p family protein K02897 RP-L25; large subunit ribosomal protein L25
D INE87_00037 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D INE87_00033 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D INE87_00036 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:pmer03009]
D INE87_02484 Ribonuclease-III-like protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
D INE87_03121 era; GTPase Era K03595 era; GTPase
D INE87_01707 cgtA; GTPase Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D INE87_01803 Prokaryotic dksA/traR C4-type zinc finger K06204 dksA; RNA polymerase-binding transcription factor
D INE87_02143 nusA; Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D INE87_01554 NusB family protein K03625 nusB; transcription antitermination protein NusB
D INE87_01920 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D INE87_02933 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D INE87_03092 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D INE87_01435 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D INE87_01779 rRNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D INE87_02975 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D INE87_03086 rsmI_1; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D INE87_03223 rsmI_2; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D INE87_00514 Putative TrmH family tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D INE87_03227 rlmH; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D INE87_03611 rlmI; Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D INE87_02545 Putative RNA methylase family protein K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D INE87_03906 putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D INE87_00661 rlmCD; 23S rRNA (uracil-C(5))-methyltransferase RlmCD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D INE87_01832 RNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D INE87_01989 RNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D INE87_01633 putative RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D INE87_02275 RNA pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D INE87_03511 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D INE87_02356 S4 domain protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D INE87_01162 Acetyltransferase (GNAT) domain protein K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
D INE87_01749 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D INE87_00472 rimO; Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D INE87_01619 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D INE87_03831 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D INE87_00078 yrrK; Putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D INE87_02719 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D INE87_02881 rsgA; Small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D INE87_03122 der; GTPase Der K03977 engA; GTPase
D INE87_02965 hflX; GTPase HflX K03665 hflX; GTPase
D INE87_01009 Telomere recombination K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D INE87_03024 spoT; Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D INE87_03252 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D INE87_02971 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D INE87_02144 RimP N-terminal domain protein K09748 rimP; ribosome maturation factor RimP
D INE87_01548 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
D INE87_01928 hpf; Ribosome hibernation promoting factor K05808 hpf; ribosome hibernation promoting factor
D INE87_02647 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
D INE87_03118 Large ribosomal RNA subunit accumulation protein YceD K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:pmer03016]
D INE87_03010 rnz; Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D INE87_03894 hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D INE87_00810 hypothetical protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D INE87_03488 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D INE87_01169 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D INE87_01804 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D INE87_02594 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D INE87_02438 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D INE87_01194 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D INE87_02084 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D INE87_01421 lysU; Lysine--tRNA ligase, heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D INE87_00109 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D INE87_03028 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D INE87_01265 asnS_1; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D INE87_01988 asnS_2; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D INE87_02579 glyQS; Glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D INE87_00103 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D INE87_01611 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D INE87_02732 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D INE87_03515 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D INE87_03502 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D INE87_01356 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D INE87_01374 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D INE87_02550 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D INE87_02212 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D INE87_02654 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D INE87_02348 putative HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D INE87_02070 Putative methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D INE87_01582 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D INE87_03148 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D INE87_01009 Telomere recombination K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D INE87_01624 miaA_1; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D INE87_03713 miaA_2; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D INE87_03703 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D INE87_02656 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D INE87_00447 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D INE87_02553 Ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D INE87_00951 ettA_1; Energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D INE87_00673 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D INE87_02951 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D INE87_03143 miaB; tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D INE87_01886 mtaB; Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D INE87_01379 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D INE87_01562 yfiC; tRNA1(Val) (adenine(37)-N6)-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D INE87_01799 SpoU rRNA Methylase family protein K03437 spoU; RNA methyltransferase, TrmH family
D INE87_01832 RNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D INE87_01932 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D INE87_03711 ttcA; tRNA-cytidine(32) 2-sulfurtransferase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D INE87_01441 queA_1; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D INE87_03149 queA_2; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D INE87_03738 Queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D INE87_00200 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D INE87_00199 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D INE87_03737 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D INE87_02537 queG; Epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D INE87_00271 tgt; Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D INE87_00112 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D INE87_01416 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D INE87_01361 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D INE87_02747 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D INE87_02502 PRTRC_ThiF: PRTRC system ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D INE87_02745 rnr; Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D INE87_02351 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:pmer03012]
D INE87_02946 putative protein YciH K03113 EIF1; translation initiation factor 1
D INE87_02142 Translation-initiation factor 2 K02519 infB; translation initiation factor IF-2
D INE87_00104 Translation initiation factor IF-3, C-terminal domain K02520 infC; translation initiation factor IF-3
D INE87_01229 putative ABC transporter ATP-binding protein YbiT K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D INE87_01689 putative ABC transporter ATP-binding protein YheS K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D INE87_02168 Elongation factor TS K02357 tsf; elongation factor Ts
D INE87_01923 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D INE87_01959 fusA; Elongation factor G K02355 fusA; elongation factor G
D INE87_03172 fusB; Elongation factor G 2 K02355 fusA; elongation factor G
D INE87_03719 prfA; Peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D INE87_02880 frr; Ribosome-recycling factor K02838 frr; ribosome recycling factor
D INE87_02024 Methyltransferase small domain protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D INE87_01668 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D INE87_03196 infA; Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D INE87_02924 efp; Elongation factor P K02356 efp; elongation factor P
D INE87_02341 prfB; Peptide chain release factor RF2 K02836 prfB; peptide chain release factor 2
D INE87_03082 prfC; Peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:pmer03110]
D INE87_00148 Bacteriodales T6SS TssH (ClpV) protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D INE87_03440 Bacteriodales T6SS TssH (ClpV) protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D INE87_00669 Bacteriodales T6SS TssH (ClpV) protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D INE87_03161 Bacteriodales T6SS TssH (ClpV) protein K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D INE87_00622 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D INE87_03822 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D INE87_03504 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D INE87_01048 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D INE87_01640 cbpA; Curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D INE87_01049 grpE; Protein GrpE K03687 GRPE; molecular chaperone GrpE
D INE87_00721 18 kDa heat shock protein K13993 HSP20; HSP20 family protein
D INE87_03871 Acid shock protein K13993 HSP20; HSP20 family protein
D INE87_01669 hslR; Heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D INE87_03503 groS1; 10 kDa chaperonin 1 K04078 groES; chaperonin GroES
D INE87_02038 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D INE87_01549 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D INE87_02244 ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D INE87_00819 CobW/HypB/UreG, nucleotide-binding domain K04652 hypB; hydrogenase nickel incorporation protein HypB
D INE87_00107 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_00613 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02122 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02501 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_02707 exoI; Beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03042 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03076 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03108 Glycosyl hydrolase family 20, catalytic domain K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D INE87_03905 SurA N-terminal domain protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D INE87_01866 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D INE87_02307 mip_2; Outer membrane protein MIP K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D INE87_02578 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D INE87_03229 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D INE87_03164 PPIC-type PPIASE domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D INE87_03166 PPIC-type PPIASE domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D INE87_02174 trxA_2; Thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:pmer04131]
D INE87_01623 gapA; Glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D INE87_00722 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D INE87_02969 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D INE87_00622 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:pmer03051]
D INE87_00622 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:pmer03032]
D INE87_02456 rnhA; Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D INE87_00180 hup_1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_00248 hup_2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_00473 hup_3; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_02083 hup_4; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_03032 hupA; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta
D INE87_03832 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_04006 hup_5; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_01898 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D INE87_00432 dnaC_1; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D INE87_00531 dnaC_2; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D INE87_02387 dnaC_3; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D INE87_01543 DNA primase catalytic core, N-terminal domain K02316 dnaG; DNA primase [EC:2.7.7.101]
D INE87_02386 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D INE87_03834 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04035 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04027 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_02173 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D INE87_00506 dnaN_1; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D INE87_00536 dnaN_2; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D INE87_00642 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D INE87_01044 DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D INE87_00507 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D INE87_02314 polC; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D INE87_03735 DNA polymerase III, delta subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D INE87_02116 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D INE87_02649 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D INE87_00455 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D INE87_00668 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D INE87_02112 gyrB_1; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D INE87_02525 DNA gyrase/topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D INE87_02406 gyrB_2; DNA gyrase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D INE87_02085 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D INE87_00277 topB_1; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D INE87_00925 topB_2; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D INE87_01262 topB_3; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D INE87_03304 topB_4; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D INE87_03461 topB_5; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D INE87_03635 topB_6; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D INE87_03796 topB_7; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:pmer03036]
D INE87_02484 Ribonuclease-III-like protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
D INE87_00180 hup_1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_00248 hup_2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_00473 hup_3; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_02083 hup_4; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_03032 hupA; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta
D INE87_03832 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_04006 hup_5; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_01640 cbpA; Curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D INE87_01898 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D INE87_00333 dps; DNA protection during starvation protein K04047 dps; starvation-inducible DNA-binding protein
D INE87_02435 decR; DNA-binding transcriptional activator DecR K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D INE87_02985 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D INE87_03734 Septum formation initiator K13052 divIC; cell division protein DivIC
D INE87_03583 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D INE87_02977 spoVD; Stage V sporulation protein D K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D INE87_03615 FtsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D INE87_02984 hypothetical protein K03589 ftsQ; cell division protein FtsQ
D INE87_02981 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; cell division protein FtsW
D INE87_03145 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D INE87_02986 Tubulin/FtsZ family, GTPase domain K03531 ftsZ; cell division protein FtsZ
D INE87_01701 Cell division protein ZapA K09888 zapA; cell division protein ZapA
D INE87_00850 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D INE87_01900 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D INE87_00038 bepD; Efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_00382 mexA_1; Multidrug resistance protein MexA K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_01154 bepF_2; Efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_02828 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_03605 mexA_2; Multidrug resistance protein MexA K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_01571 mbl; Cell shape-determining protein Mbl K03569 mreB; rod shape-determining protein MreB and related proteins
D INE87_01570 mreC; Cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D INE87_01567 Cell cycle protein K05837 rodA; rod shape determining protein RodA
D INE87_03020 soj_1; Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D INE87_03980 soj_3; Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D INE87_04055 AAA domain protein K03496 parA; chromosome partitioning protein
D INE87_03021 PRTRC_parB: PRTRC system ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D INE87_02525 DNA gyrase/topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D INE87_02406 gyrB_2; DNA gyrase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D INE87_02656 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D INE87_01779 rRNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D INE87_01929 xerC; Tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D INE87_02967 xerD; Tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D INE87_02071 NUBPL iron-transfer P-loop NTPase K03593 mrp; ATP-binding protein involved in chromosome partitioning
D INE87_00996 putative GTP-binding protein EngB K03978 engB; GTP-binding protein
D INE87_03938 hypothetical protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:pmer03400]
D INE87_03575 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D INE87_01997 ung_1; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D INE87_03370 ung_2; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D INE87_03833 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D INE87_01358 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D INE87_01215 NUDIX domain protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D INE87_02751 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D INE87_03590 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D INE87_00144 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D INE87_02204 Endonuclease/Exonuclease/phosphatase family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D INE87_01179 nfo; Endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D INE87_01013 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D INE87_00455 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D INE87_02649 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D INE87_00219 uvrA_1; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D INE87_02873 uvrA_2; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D INE87_01629 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D INE87_02655 Tox-URI1 protein K03703 uvrC; excinuclease ABC subunit C
D INE87_00839 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D INE87_00943 helD; DNA helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D INE87_01915 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D INE87_01914 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D INE87_03200 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D INE87_00533 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D INE87_02626 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D INE87_01051 mutS2; Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D INE87_03169 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D INE87_02303 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D INE87_02302 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D INE87_02173 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D INE87_00506 dnaN_1; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D INE87_00536 dnaN_2; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D INE87_00642 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D INE87_01044 DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D INE87_00507 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D INE87_02314 polC; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D INE87_03735 DNA polymerase III, delta subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D INE87_03834 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04035 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04027 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_00057 recA; Protein RecA K03553 recA; recombination protein RecA
D INE87_03368 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D INE87_02682 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D INE87_03536 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D INE87_03485 3'DNA-binding domain (3'BD) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D INE87_01391 Putative exonuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50
D INE87_01392 Calcineurin-like phosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D INE87_01147 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D INE87_03924 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D INE87_00591 SNF2 family N-terminal domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D INE87_00870 Putative ATP-dependent DNA helicase recG C-terminal K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D INE87_00921 Putative ATP-dependent DNA helicase recG C-terminal K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D INE87_02300 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D INE87_03782 Putative ATP-dependent DNA helicase recG C-terminal K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D INE87_02107 Recombination protein O C terminal K03584 recO; DNA repair protein RecO (recombination protein O)
D INE87_00992 recR; Recombination protein RecR K06187 recR; recombination protein RecR
D INE87_00511 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D INE87_02592 CRISPR associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D INE87_00668 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D INE87_02112 gyrB_1; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D INE87_02085 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D INE87_00180 hup_1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_00248 hup_2; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_00473 hup_3; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_02083 hup_4; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_03032 hupA; DNA-binding protein HU 1 K03530 hupB; DNA-binding protein HU-beta
D INE87_03832 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_04006 hup_5; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D INE87_00597 RecT family protein K07455 recT; recombination protein RecT
D INE87_00149 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_00343 recQ_1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_00364 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_01014 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_03162 recQ_2; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D INE87_01795 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D INE87_02025 RecX family protein K03565 recX; regulatory protein
D INE87_01897 Ribonucleotide reductase, barrel domain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D INE87_00214 nrnA; Bifunctional oligoribonuclease and PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:pmer03029]
D INE87_02142 Translation-initiation factor 2 K02519 infB; translation initiation factor IF-2
D INE87_00104 Translation initiation factor IF-3, C-terminal domain K02520 infC; translation initiation factor IF-3
D INE87_02168 Elongation factor TS K02357 tsf; elongation factor Ts
D INE87_01923 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D INE87_01959 fusA; Elongation factor G K02355 fusA; elongation factor G
D INE87_03172 fusB; Elongation factor G 2 K02355 fusA; elongation factor G
D INE87_03121 era; GTPase Era K03595 era; GTPase
D INE87_02550 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D INE87_02594 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D INE87_00109 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D INE87_02579 glyQS; Glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D INE87_02084 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D INE87_00492 Tox-NucA protein K01173 ENDOG; endonuclease G, mitochondrial
D INE87_03834 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04035 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_04027 Single-strand binding protein family protein K03111 ssb; single-strand DNA-binding protein
D INE87_02011 Surface antigen variable number repeat protein K07277 SAM50; outer membrane protein insertion porin family
D INE87_03822 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D INE87_01049 grpE; Protein GrpE K03687 GRPE; molecular chaperone GrpE
D INE87_03504 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D INE87_03503 groS1; 10 kDa chaperonin 1 K04078 groES; chaperonin GroES
D INE87_02038 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D INE87_01048 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D INE87_02071 NUBPL iron-transfer P-loop NTPase K03593 mrp; ATP-binding protein involved in chromosome partitioning
D INE87_01653 60Kd inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D INE87_00622 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pmer02000]
D INE87_03642 irtA; Iron import ATP-binding/permease protein IrtA K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D INE87_03643 putative ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D INE87_03127 msbA; Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D INE87_03573 ettA_2; Energy-dependent translational throttle protein EttA K15738 uup; ABC transport system ATP-binding/permease protein
D INE87_01732 modF; ABC transporter ATP-binding protein ModF K05776 modF; molybdate transport system ATP-binding protein
D INE87_01133 Bacterial extracellular solute-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D INE87_01134 Binding-protein-dependent transport system inner membrane component K11070 potC; spermidine/putrescine transport system permease protein
D INE87_01135 potB; Spermidine/putrescine transport system permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D INE87_01136 ABC transporter K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D INE87_03868 Substrate binding domain of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D INE87_03867 opuAB; Glycine betaine transport system permease protein OpuAB K02001 proW; glycine betaine/proline transport system permease protein
D INE87_03866 gbuA; Glycine betaine/carnitine transport ATP-binding protein GbuA K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D INE87_00670 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D INE87_01899 MlaD protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D INE87_03155 mlaE; Intermembrane phospholipid transport system permease protein MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D INE87_03154 metN; Methionine import ATP-binding protein MetN K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D INE87_03040 pstS; Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D INE87_03135 Binding-protein-dependent transport system inner membrane component K02037 pstC; phosphate transport system permease protein
D INE87_03134 pstA1; Phosphate transport system permease protein PstA 1 K02038 pstA; phosphate transport system permease protein
D INE87_03133 pstB3; Phosphate import ATP-binding protein PstB 3 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D INE87_00961 Periplasmic binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D INE87_02238 Periplasmic binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D INE87_00960 hmuU; Hemin transport system permease protein HmuU K25027 btuC; cobalamin transport system permease protein
D INE87_02042 btuC; Vitamin B12 import system permease protein BtuC K25027 btuC; cobalamin transport system permease protein
D INE87_00959 putative siderophore transport system ATP-binding protein YusV K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D INE87_02041 ABC transporter K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D INE87_02521 znuA; High-affinity zinc uptake system binding-protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D INE87_02796 znuB; High-affinity zinc uptake system membrane protein ZnuB K09816 znuB; zinc transport system permease protein
D INE87_02520 ABC transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D INE87_02165 Lipopolysaccharide export system permease LptF/LptG K07091 lptF; lipopolysaccharide export system permease protein
D INE87_00270 Lipopolysaccharide export system permease LptF/LptG K11720 lptG; lipopolysaccharide export system permease protein
D INE87_03156 lptB; Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D INE87_02972 lolE_1; Lipoprotein-releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D INE87_03579 lolE_2; Lipoprotein-releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D INE87_02503 lolD; Lipoprotein-releasing system ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D INE87_03145 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D INE87_03583 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D INE87_01164 ABC-2 family transporter protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D INE87_01426 lnrN; Linearmycin resistance permease protein LnrN K01992 ABC-2.P; ABC-2 type transport system permease protein
D INE87_01427 ABC-2 family transporter protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D INE87_01446 ABC-2 family transporter protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D INE87_01447 putative multidrug ABC transporter permease YbhS K01992 ABC-2.P; ABC-2 type transport system permease protein
D INE87_01545 putative protein YhaP K01992 ABC-2.P; ABC-2 type transport system permease protein
D INE87_01165 bcrA; Bacitracin transport ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D INE87_01544 lnrL; Linearmycin resistance ATP-binding protein LnrL K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D INE87_02609 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D INE87_00129 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D INE87_01315 MacB-like periplasmic core domain protein K02004 ABC.CD.P; putative ABC transport system permease protein
D INE87_01317 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D INE87_01318 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D INE87_01946 macB_1; Macrolide export ATP-binding/permease protein MacB K02004 ABC.CD.P; putative ABC transport system permease protein
D INE87_01947 macB_2; Macrolide export ATP-binding/permease protein MacB K02004 ABC.CD.P; putative ABC transport system permease protein
D INE87_02416 macB_3; Macrolide export ATP-binding/permease protein MacB K02004 ABC.CD.P; putative ABC transport system permease protein
D INE87_02730 MacB-like periplasmic core domain protein K02004 ABC.CD.P; putative ABC transport system permease protein
D INE87_03882 MacB-like periplasmic core domain protein K02004 ABC.CD.P; putative ABC transport system permease protein
D INE87_03884 MacB-like periplasmic core domain protein K02004 ABC.CD.P; putative ABC transport system permease protein
D INE87_00130 putative ABC transporter ATP-binding protein YknY K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D INE87_01316 putative ABC transporter ATP-binding protein YknY K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D INE87_01948 putative ABC transporter ATP-binding protein YknY K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D INE87_02192 putative ABC transporter ATP-binding protein YknY K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D INE87_02415 putative ABC transporter ATP-binding protein YknY K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D INE87_02729 putative ABC transporter ATP-binding protein YknY K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D INE87_03886 putative ABC transporter ATP-binding protein YknY K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D INE87_02139 putative ATP-dependent transporter SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D INE87_01956 mepA_4; Multidrug export protein MepA K26939 norM; MATE family, multidrug efflux pump
D INE87_01477 norM; Multidrug resistance protein NorM K26939 norM; MATE family, multidrug efflux pump
D INE87_01045 MatE K26937 dinF; MATE family, multidrug efflux pump
D INE87_00227 mepA_1; Multidrug export protein MepA K26937 dinF; MATE family, multidrug efflux pump
D INE87_01786 dinF; DNA damage-inducible protein F K26937 dinF; MATE family, multidrug efflux pump
D INE87_01520 mepA_3; Multidrug export protein MepA K26937 dinF; MATE family, multidrug efflux pump
D INE87_01001 MatE K26937 dinF; MATE family, multidrug efflux pump
D INE87_00020 MatE K26937 dinF; MATE family, multidrug efflux pump
D INE87_00932 MatE K26937 dinF; MATE family, multidrug efflux pump
D INE87_01114 mepA_2; Multidrug export protein MepA K26937 dinF; MATE family, multidrug efflux pump
D INE87_02040 mepA_5; Multidrug export protein MepA K26937 dinF; MATE family, multidrug efflux pump
D INE87_00946 MatE K26937 dinF; MATE family, multidrug efflux pump
D INE87_00140 xylE; D-xylose-proton symporter K08138 xylE; MFS transporter, SP family, xylose:H+ symportor
D INE87_01213 fucP_1; L-fucose-proton symporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D INE87_02904 fucP_3; L-fucose-proton symporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D INE87_03873 fucP_4; L-fucose-proton symporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D INE87_02334 exuT; Hexuronate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D INE87_01814 ampG_1; Anhydromuropeptide permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D INE87_02338 ydhC; Inner membrane transport protein YdhC K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D INE87_01282 araJ; Putative transporter AraJ K08156 araJ; MFS transporter, DHA1 family, arabinose polymer utilization protein
D INE87_01450 fsr; Fosmidomycin resistance protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D INE87_00478 UPF0353 protein K07114 yfbK; Ca-activated chloride channel homolog
D INE87_00479 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D INE87_01855 mscL; Large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D INE87_01290 mscS_1; Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D INE87_03245 mscS_2; Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D INE87_00688 ybdG_2; Miniconductance mechanosensitive channel YbdG K16053 ybdG; miniconductance mechanosensitive channel
D INE87_02932 mgtE; Magnesium transporter MgtE K06213 mgtE; magnesium transporter
D INE87_03874 OmpA family protein K02557 motB; chemotaxis protein MotB
D INE87_01459 tolQ; Tol-Pal system protein TolQ K03561 exbB; biopolymer transport protein ExbB
D INE87_01982 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D INE87_01460 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D INE87_01052 corA_1; Cobalt/magnesium transport protein CorA K03284 corA; magnesium transporter
D INE87_01115 corA_2; Cobalt/magnesium transport protein CorA K03284 corA; magnesium transporter
D INE87_01357 crcB; Putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter
D INE87_00134 ytfL; UPF0053 inner membrane protein YtfL K03699 tlyC; magnesium and cobalt exporter, CNNM family
D INE87_03835 UPF0053 protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D INE87_03904 yfjD; UPF0053 inner membrane protein YfjD K03699 tlyC; magnesium and cobalt exporter, CNNM family
D INE87_00076 Outer membrane protein 40 K03286 TC.OOP; OmpA-OmpF porin, OOP family
D INE87_03739 Outer membrane protein beta-barrel domain protein K06076 fadL; long-chain fatty acid transport protein
D INE87_00887 TonB dependent receptor K16092 btuB; vitamin B12 transporter
D INE87_01533 TonB-dependent receptor P3 K21573 susC; TonB-dependent starch-binding outer membrane protein SusC
D INE87_00998 TonB dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D INE87_02261 TonB dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D INE87_01352 TonB dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D INE87_02145 TonB-dependent Receptor Plug Domain protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D INE87_01944 tolC_2; Outer membrane protein TolC K12340 tolC; outer membrane protein
D INE87_02413 oprM_4; Outer membrane protein OprM K12340 tolC; outer membrane protein
D INE87_02826 Outer membrane efflux protein K12340 tolC; outer membrane protein
D INE87_00040 oprM_1; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system
D INE87_01152 ttgF; Toluene efflux pump outer membrane protein TtgF K18139 oprM; outer membrane protein, multidrug efflux system
D INE87_00438 Polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein
D INE87_01067 Polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein
D INE87_01510 Polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein
D INE87_03956 Polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein
D INE87_02011 Surface antigen variable number repeat protein K07277 SAM50; outer membrane protein insertion porin family
D INE87_01019 bamD; Outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D INE87_03903 Lipopolysaccharide-assembly, LptC-related K11719 lptC; lipopolysaccharide export system protein LptC
D INE87_02926 lrgA; Antiholin-like protein LrgA K06518 cidA; holin-like protein
D INE87_02641 gadC; Glutamate/gamma-aminobutyrate antiporter K20265 gadC; glutamate:GABA antiporter
D INE87_03644 czcD; Cadmium, cobalt and zinc/H(+)-K(+) antiporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D INE87_01055 cusA_1; Cation efflux system protein CusA K07787 cusA; copper/silver efflux system protein
D INE87_02827 bepE_4; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D INE87_00039 bepG; Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D INE87_01581 EamA-like transporter family protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D INE87_01206 Ureide permease K05340 glcU; glucose uptake protein
D INE87_00463 rhaT; L-rhamnose-proton symporter K02856 rhaT; L-rhamnose-H+ transport protein
D INE87_03877 dcuA; Anaerobic C4-dicarboxylate transporter DcuA K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D INE87_01468 yrbG; Inner membrane protein YrbG K07301 yrbG; cation:H+ antiporter
D INE87_00223 nhaA; Na(+)/H(+) antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D INE87_02312 mleN_2; Malate-2H(+)/Na(+)-lactate antiporter K03315 nhaC; Na+:H+ antiporter, NhaC family
D INE87_02816 nhaP2; K(+)/H(+) antiporter NhaP2 K11105 cvrA; potassium/hydrogen antiporter
D INE87_00718 Sodium/hydrogen exchanger family protein K26735 KEA4_5_6; K+:H+ antiporter
D INE87_02423 Sodium/hydrogen exchanger family protein K26735 KEA4_5_6; K+:H+ antiporter
D INE87_01651 Sodium/hydrogen exchanger family protein K26735 KEA4_5_6; K+:H+ antiporter
D INE87_00222 hypothetical protein K26730 napA; Na+:H+ antiporter
D INE87_01384 Sodium/hydrogen exchanger family protein K26731 CHX; K+:H+ antiporter
D INE87_03367 trkH; Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D INE87_00135 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D INE87_03366 trkA; Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D INE87_01137 pyrP; Uracil permease K02824 uraA; uracil permease
D INE87_01645 xanP; Xanthine permease XanP K16345 xanP; xanthine permease XanP
D INE87_01469 pbuG; Guanine/hypoxanthine permease PbuG K06901 pbuG; adenine/guanine/hypoxanthine permease
D INE87_01130 clcA; H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D INE87_01007 Voltage gated chloride channel K03281 clcA; chloride channel protein, CIC family
D INE87_02411 chrA; Chromate transport protein K07240 chrA; chromate transporter
D INE87_02412 putative chromate transport protein K07240 chrA; chromate transporter
D INE87_02607 dauA; C4-dicarboxylic acid transporter DauA K03321 TC.SULP; sulfate permease, SulP family
D INE87_01193 mntH; Divalent metal cation transporter MntH K03322 mntH; manganese transport protein
D INE87_02741 Na+/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter
D INE87_01131 Putative vitamin uptake transporter K09125 yhhQ; queuosine precursor transporter
D INE87_00725 yhgN_1; UPF0056 inner membrane protein YhgN K05595 marC; multiple antibiotic resistance protein
D INE87_01889 yhgN_2; UPF0056 inner membrane protein YhgN K05595 marC; multiple antibiotic resistance protein
D INE87_03599 yhgN_3; UPF0056 inner membrane protein YhgN K05595 marC; multiple antibiotic resistance protein
D INE87_02981 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; cell division protein FtsW
D INE87_01978 Gram-negative bacterial TonB protein C-terminal K03832 tonB; periplasmic protein TonB
D INE87_01440 OmpA family protein K03640 pal; peptidoglycan-associated lipoprotein
D INE87_01936 hppA1; Putative K(+)-stimulated pyrophosphate-energized sodium pump K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D INE87_01413 gcdB_1; Glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D INE87_02291 gcdB_2; Glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D INE87_01160 cfiA_1; 2-oxoglutarate carboxylase large subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D INE87_02289 Oxaloacetate decarboxylase, gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D INE87_00080 Methylmalonyl-CoA carboxyltransferase 12S subunit K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D INE87_01410 pccB_1; Propionyl-CoA carboxylase beta chain K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D INE87_01412 Biotin-requiring enzyme K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D INE87_01109 Barrel-sandwich domain of CusB or HlyD membrane-fusion K07798 cusB; membrane fusion protein, copper/silver efflux system
D INE87_00038 bepD; Efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_00382 mexA_1; Multidrug resistance protein MexA K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_01154 bepF_2; Efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_02828 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_03605 mexA_2; Multidrug resistance protein MexA K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_00439 ptk_1; Tyrosine-protein kinase ptk K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_01509 Chain length determinant protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_01066 AAA domain protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_03955 ptk_2; Tyrosine-protein kinase ptk K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D INE87_00168 SusD-like protein P38 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_00174 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_00707 SusD-like protein P2 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_00733 susD_1; Starch-binding protein SusD K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_00844 SusD-like protein P2 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01031 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01140 SusD-like protein P2 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01327 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01388 SusD-like protein P25 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01481 Starch-binding associating with outer membrane K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01532 Starch-binding associating with outer membrane K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01618 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01693 SusD-like protein P38 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01697 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01725 Starch-binding associating with outer membrane K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01728 Starch-binding associating with outer membrane K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01756 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_01768 susD_2; Starch-binding protein SusD K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02035 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02048 SusD-like protein P2 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02057 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02123 SusD-like protein P2 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02131 SusD-like protein P2 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02134 SusD-like protein P25 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02258 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02317 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02373 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02428 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02496 SusD-like protein P25 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02507 SusD-like protein P2 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02530 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02568 SusD-like protein P2 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02622 SusD-like protein P25 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02630 SusD-like protein P2 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02768 susD_3; Starch-binding protein SusD K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02778 SusD-like protein P38 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02787 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02803 SusD-like protein P25 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02835 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02841 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02909 susD_4; Starch-binding protein SusD K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02931 SusD-like protein P38 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02961 SusD-like protein P2 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03049 SusD-like protein P38 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03100 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03256 SusD-like protein P25 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03346 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03357 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03564 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03594 SusD-like protein P25 K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03649 susD_5; Starch-binding protein SusD K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03824 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03851 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_03859 SusD family protein K21572 susD; starch-binding outer membrane protein, SusD/RagB family
D INE87_02146 ribM; Riboflavin/roseoflavin transporter RibM K03811 pnuC; nicotinamide mononucleotide transporter
D INE87_00049 Ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D INE87_00647 sapB; Protein SapB K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:pmer02044]
D INE87_01944 tolC_2; Outer membrane protein TolC K12340 tolC; outer membrane protein
D INE87_02413 oprM_4; Outer membrane protein OprM K12340 tolC; outer membrane protein
D INE87_02826 Outer membrane efflux protein K12340 tolC; outer membrane protein
D INE87_03929 Cytidine and deoxycytidylate deaminase zinc-binding region K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D INE87_00213 Competence protein K02238 comEC; competence protein ComEC
D INE87_03896 SecA DEAD-like domain protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D INE87_02077 Protein export membrane protein K12257 secDF; SecD/SecF fusion protein
D INE87_01921 SecE/Sec61-gamma subunits of protein translocation complex K03073 secE; preprotein translocase subunit SecE
D INE87_03916 Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D INE87_03194 secY; Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D INE87_00021 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D INE87_00471 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D INE87_01555 yajC; Sec translocon accessory complex subunit YajC K03210 yajC; preprotein translocase subunit YajC
D INE87_01653 60Kd inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D INE87_01024 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D INE87_01023 Sec-independent protein translocase protein (TatC) K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:pmer02042]
D INE87_00134 ytfL; UPF0053 inner membrane protein YtfL K03699 tlyC; magnesium and cobalt exporter, CNNM family
D INE87_03835 UPF0053 protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D INE87_03904 yfjD; UPF0053 inner membrane protein YfjD K03699 tlyC; magnesium and cobalt exporter, CNNM family
D INE87_00491 yqfA; UPF0073 inner membrane protein YqfA K11068 hlyIII; hemolysin III
D INE87_00254 O-GlcNAcase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]
C 02022 Two-component system [BR:pmer02022]
D INE87_02997 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D INE87_00856 kdpD; Sensor protein KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D INE87_01313 phoR; Alkaline phosphatase synthesis sensor protein PhoR K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D INE87_02660 btsR; Transcriptional regulatory protein BtsR K02477 K02477; two-component system, LytTR family, response regulator
D INE87_00976 zraR_1; Transcriptional regulatory protein ZraR K07713 zraR; two-component system, NtrC family, response regulator HydG
D INE87_03653 zraR_6; Transcriptional regulatory protein ZraR K07713 zraR; two-component system, NtrC family, response regulator HydG
D INE87_03299 zraR_4; Transcriptional regulatory protein ZraR K07713 zraR; two-component system, NtrC family, response regulator HydG
D INE87_03785 zraR_7; Transcriptional regulatory protein ZraR K07713 zraR; two-component system, NtrC family, response regulator HydG
D INE87_03875 atoC_3; Regulatory protein AtoC K02481 flgR; two-component system, NtrC family, response regulator
D INE87_03892 atoC_4; Regulatory protein AtoC K02481 flgR; two-component system, NtrC family, response regulator
D INE87_00610 Response regulator receiver domain protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:pmer02035]
D INE87_03874 OmpA family protein K02557 motB; chemotaxis protein MotB
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:pmer04812]
D INE87_01571 mbl; Cell shape-determining protein Mbl K03569 mreB; rod shape-determining protein MreB and related proteins
D INE87_02986 Tubulin/FtsZ family, GTPase domain K03531 ftsZ; cell division protein FtsZ
D INE87_02985 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D INE87_03020 soj_1; Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D INE87_03980 soj_3; Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D INE87_04055 AAA domain protein K03496 parA; chromosome partitioning protein
D INE87_03021 PRTRC_parB: PRTRC system ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:pmer04147]
D INE87_00622 htpG; Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D INE87_03211 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D INE87_01623 gapA; Glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D INE87_01167 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D INE87_02969 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D INE87_03504 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D INE87_03822 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D INE87_01423 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D INE87_01869 dap4; Dipeptidyl aminopeptidase 4 K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D INE87_03215 ptpA_2; Prolyl tripeptidyl peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D INE87_03856 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D INE87_01923 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D INE87_02348 putative HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D INE87_00532 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_00953 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_01884 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_02342 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D INE87_02381 ahcY; Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D INE87_01708 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D INE87_02029 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D INE87_01863 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D INE87_01322 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D INE87_02696 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D INE87_02838 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D INE87_01214 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D INE87_01383 glgB; 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D INE87_00196 glpK; Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D INE87_00348 glnA_1; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_01937 glnA_2; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_03568 glnA_3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D INE87_00690 Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain protein K01205 NAGLU; alpha-N-acetylglucosaminidase [EC:3.2.1.50]
D INE87_02771 Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain protein K01205 NAGLU; alpha-N-acetylglucosaminidase [EC:3.2.1.50]
D INE87_00383 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D INE87_01721 Hydroxypyruvate reductase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D INE87_00275 purH_1; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D INE87_01572 purH_2; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D INE87_00500 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_02580 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D INE87_01783 carE; Caffeyl-CoA reductase-Etf complex subunit CarE K03522 fixB; electron transfer flavoprotein alpha subunit
D INE87_01198 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D INE87_02296 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D INE87_00722 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:pmer02048]
D INE87_02592 CRISPR associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D INE87_02591 cas2; CRISPR-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D INE87_02593 RuvC endonuclease subdomain 3 K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]
D INE87_02023 hsdR; Type-1 restriction enzyme R protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D INE87_03807 Type III restriction enzyme, res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D INE87_02018 Type I restriction modification DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D INE87_02019 Type I restriction modification DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D INE87_03810 Type I restriction modification DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D INE87_02021 N-6 DNA Methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D INE87_03392 N-6 DNA Methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D INE87_03808 putative type I restriction enzymeP M protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D INE87_03684 N-6 DNA Methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D INE87_04004 mazF9; Endoribonuclease MazF9 K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D INE87_04003 hypothetical protein K07172 mazE; antitoxin MazE
D INE87_01306 Bacterial toxin of type II toxin-antitoxin system, YafQ K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D INE87_02410 Tox-RelE protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D INE87_03967 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D INE87_03972 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D INE87_04025 HipA-like C-terminal domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D INE87_00753 Tox-RelE protein K07334 higB-1; toxin HigB-1
D INE87_01348 Tox-RelE protein K07334 higB-1; toxin HigB-1
D INE87_00752 helix-turn-helix protein K21498 higA-1; antitoxin HigA-1
D INE87_01347 helix-turn-helix protein K21498 higA-1; antitoxin HigA-1
D INE87_02986 Tubulin/FtsZ family, GTPase domain K03531 ftsZ; cell division protein FtsZ
D INE87_01571 mbl; Cell shape-determining protein Mbl K03569 mreB; rod shape-determining protein MreB and related proteins
D INE87_02525 DNA gyrase/topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D INE87_02406 gyrB_2; DNA gyrase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D INE87_03488 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:pmer04090]
D INE87_01869 dap4; Dipeptidyl aminopeptidase 4 K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D INE87_03215 ptpA_2; Prolyl tripeptidyl peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 01504 Antimicrobial resistance genes [BR:pmer01504]
D INE87_03301 tet(Q); tetracycline resistance ribosomal protection protein Tet(Q) K18220 tetM; ribosomal protection tetracycline resistance protein
D INE87_00931 vat_1; Virginiamycin A acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-]
D INE87_00947 vat_2; Virginiamycin A acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-]
D INE87_00518 cat3; Chloramphenicol acetyltransferase 3 K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28]
D INE87_00251 BlaR1 peptidase M56 K02172 blaR1; bla regulator protein blaR1
D INE87_00468 Gram-negative bacterial TonB protein C-terminal K02172 blaR1; bla regulator protein blaR1
D INE87_02854 Tox-MPTase01 protein K02172 blaR1; bla regulator protein blaR1
D INE87_00250 mecI; Methicillin resistance regulatory protein MecI K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D INE87_02853 Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D INE87_00038 bepD; Efflux pump periplasmic linker BepD K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_00382 mexA_1; Multidrug resistance protein MexA K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_01154 bepF_2; Efflux pump periplasmic linker BepF K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_02828 Barrel-sandwich domain of CusB or HlyD membrane-fusion K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_03605 mexA_2; Multidrug resistance protein MexA K03585 acrA; membrane fusion protein, multidrug efflux system
D INE87_02827 bepE_4; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D INE87_00039 bepG; Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D INE87_00040 oprM_1; Outer membrane protein OprM K18139 oprM; outer membrane protein, multidrug efflux system
D INE87_01152 ttgF; Toluene efflux pump outer membrane protein TtgF K18139 oprM; outer membrane protein, multidrug efflux system
D INE87_01944 tolC_2; Outer membrane protein TolC K12340 tolC; outer membrane protein
D INE87_02413 oprM_4; Outer membrane protein OprM K12340 tolC; outer membrane protein
D INE87_02826 Outer membrane efflux protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:pmer00536]
D INE87_00254 O-GlcNAcase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:pmer00537]
D INE87_00383 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D INE87_00254 O-GlcNAcase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pmer03100]
D INE87_00035 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_01514 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_01839 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_01851 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_02331 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_03114 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D INE87_02106 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D INE87_00618 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D INE87_00619 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D INE87_00620 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D INE87_01797 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D INE87_02067 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D INE87_02068 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D INE87_02069 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D INE87_00987 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D INE87_03588 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D INE87_03589 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D INE87_00188 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D INE87_00189 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D INE87_02549 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D INE87_02109 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D INE87_02111 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D INE87_01337 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_02031 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_02033 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_01734 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_01925 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_03920 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D INE87_00024 tRNA-His K14226 tRNA-His; tRNA His
D INE87_00034 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_01515 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_01840 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_01852 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_02332 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_03113 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D INE87_02522 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_02888 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_01336 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_03505 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_02032 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_01335 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D INE87_00866 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D INE87_02421 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D INE87_01223 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D INE87_02340 tRNA-Met K14230 tRNA-Met; tRNA Met
D INE87_01637 tRNA-Met K14230 tRNA-Met; tRNA Met
D INE87_01642 tRNA-Met K14230 tRNA-Met; tRNA Met
D INE87_02163 tRNA-Met K14230 tRNA-Met; tRNA Met
D INE87_03321 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D INE87_03373 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D INE87_03031 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D INE87_00664 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D INE87_03320 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D INE87_00026 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_01156 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_01981 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_01157 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_01233 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_01395 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D INE87_00985 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D INE87_01493 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D INE87_01927 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D INE87_01922 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D INE87_03567 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D INE87_00986 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D INE87_01926 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D INE87_03921 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D INE87_01991 tRNA-Val K14237 tRNA-Val; tRNA Val
D INE87_01992 tRNA-Val K14237 tRNA-Val; tRNA Val
D INE87_01993 tRNA-Val K14237 tRNA-Val; tRNA Val
D INE87_00033 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D INE87_00036 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D INE87_00037 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D INE87_01846 ssrA; transfer-messenger RNA, SsrA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D INE87_03139 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D INE87_01286 gpr; L-glyceraldehyde 3-phosphate reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D INE87_00028 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D INE87_00029 Pyruvate ferredoxin/flavodoxin oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D INE87_00060 Carboxynorspermidine synthase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D INE87_03073 ahpF; Alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D INE87_01276 msrAB; Peptide methionine sulfoxide reductase MsrA/MsrB K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D INE87_00441 Di-heme cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D INE87_00058 bcp; Putative peroxiredoxin bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D INE87_01792 tpx; Thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D INE87_03072 ahpC; Alkyl hydroperoxide reductase C K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D INE87_00697 hndB; NADP-reducing hydrogenase subunit HndB K17992 hndB; NADP-reducing hydrogenase subunit HndB [EC:1.12.1.3]
D INE87_00694 hndA; NADP-reducing hydrogenase subunit HndA K18330 hndA; NADP-reducing hydrogenase subunit HndA [EC:1.12.1.3]
D INE87_00696 hndC; NADP-reducing hydrogenase subunit HndC K18331 hndC; NADP-reducing hydrogenase subunit HndC [EC:1.12.1.3]
D INE87_00695 hndD; NADP-reducing hydrogenase subunit HndD K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3]
D INE87_03857 yhhW; Quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D INE87_00724 ftnA_1; Bacterial non-heme ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D INE87_00726 Ferritin-like domain protein K02217 ftnA; ferritin [EC:1.16.3.2]
D INE87_03870 ftnA_2; Bacterial non-heme ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D INE87_02037 Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D INE87_02527 arsC; Arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D INE87_02251 4Fe-4S single cluster domain protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D INE87_00974 cutD; Choline trimethylamine-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D INE87_03070 pflA; Pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D INE87_01881 argF'; N-succinylornithine carbamoyltransferase K13043 argF; N-succinyl-L-ornithine transcarbamylase [EC:2.1.3.11]
D INE87_02832 novN; Decarbamoylnovobiocin carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D INE87_01434 Putative acetyltransferase K00633 lacA; galactoside O-acetyltransferase [EC:2.3.1.18]
D INE87_00152 putative N-acetyltransferase YafP K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D INE87_02089 lgt; Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D INE87_00047 apbE_1; FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D INE87_02917 cdaA; Cyclic di-AMP synthase CdaA K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D INE87_02670 GDSL-like Lipase/Acylhydrolase family protein K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53]
D INE87_02872 alpha-L-rhamnosidase K25010 GE; (4-O-methyl)-D-glucuronate---lignin esterase [EC:3.1.1.117]
D INE87_03260 Carbohydrate esterase K25010 GE; (4-O-methyl)-D-glucuronate---lignin esterase [EC:3.1.1.117]
D INE87_02850 Putative esterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D INE87_00440 capC; Capsular polysaccharide biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D INE87_03954 ywqE; Tyrosine-protein phosphatase YwqE K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D INE87_00880 his2; Histidinol phosphatase of the PHP family protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D INE87_03487 7TM receptor with intracellular HD hydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D INE87_01980 dtd3_1; D-aminoacyl-tRNA deacylase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D INE87_02551 dtd3_2; D-aminoacyl-tRNA deacylase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D INE87_03274 hypothetical protein K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D INE87_03400 hypothetical protein K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D INE87_03677 hypothetical protein K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D INE87_03758 hypothetical protein K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D INE87_03852 abn-ts; Intracellular endo-alpha-(1->5)-L-arabinanase K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99]
D INE87_03593 yteR_2; Unsaturated rhamnogalacturonyl hydrolase YteR K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D INE87_02059 1,4-beta-mannosyl-N-acetylglucosamine phosphorylase K21065 E3.2.1.197; beta-1,2-mannosidase [EC:3.2.1.197]
D INE87_00261 Glycosyl hydrolases family 31 K25767 nag31; exo-acting protein-alpha-N-acetylgalactosaminidase [EC:3.2.1.217]
D INE87_03005 protein of unknown function (DUF1080) K26288 E3.2.1.218; alpha-3'-ketoglucosidase [EC:3.2.1.218]
D INE87_03825 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D INE87_00128 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D INE87_00079 def; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D INE87_00515 yabJ; 2-iminobutanoate/2-iminopropanoate deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D INE87_00475 ATPase family associated with various cellular activities (AAA) K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D INE87_00686 Amidohydrolase K22213 PATG; 6-methylsalicylate decarboxylase [EC:4.1.1.52]
D INE87_01735 nnr; Bifunctional NAD(P)H-hydrate repair enzyme Nnr K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D INE87_03105 Polysaccharide lyase family 8, super-sandwich domain K01727 hysA; hyaluronate lyase [EC:4.2.2.1]
D INE87_00197 Polysaccharide lyase family 8, super-sandwich domain K19049 cslA; chondroitin AC lyase [EC:4.2.2.5]
D INE87_01186 L-fucose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D INE87_01002 mip_1; Outer membrane protein MIP K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D INE87_01364 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D INE87_01476 Putative peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D INE87_03079 Mur ligase middle domain protein K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D INE87_01714 rnfD; Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit D K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D INE87_01713 rnfC; Proton-translocating ferredoxin:NAD(+) oxidoreductase complex subunit C K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D INE87_01712 4Fe-4S binding domain protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D INE87_00632 nqrA; Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D INE87_00633 nqrB; Na(+)-translocating NADH-quinone reductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D INE87_00634 nqrC; Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D INE87_00635 nqrD; Na(+)-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D INE87_00636 nqrE; Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D INE87_00637 nqrF; Na(+)-translocating NADH-quinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D INE87_00489 copA; Copper-exporting P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D INE87_03212 Calcium-transporting ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D INE87_02790 ziaA; Zinc-transporting ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D INE87_00370 lutA; Lactate utilization protein A K18928 lldE; L-lactate dehydrogenase complex protein LldE
D INE87_00371 lutB; Lactate utilization protein B K18929 lldF; L-lactate dehydrogenase complex protein LldF
D INE87_00372 LUD domain protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D INE87_01876 4Fe-4S single cluster domain of Ferredoxin I K05337 fer; ferredoxin
D INE87_01715 rsxG; Ion-translocating oxidoreductase complex subunit G K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D INE87_01716 rnfE; Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit E K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D INE87_01717 rnfA; Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit A K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D INE87_00496 isiB; Flavodoxin K03839 fldA; flavodoxin I
D INE87_01782 Electron transfer flavoprotein domain protein K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D INE87_01607 Pyridoxal phosphate homeostasis protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D INE87_02934 Lysylphosphatidylglycerol synthase TM region K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
D INE87_01994 DoxX K15977 K15977; putative oxidoreductase
D INE87_00818 pat; Peptidyl-lysine N-acetyltransferase Pat K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D INE87_00554 BRO family, N-terminal domain K07741 antB; anti-repressor protein
D INE87_00672 yhgF; Protein YhgF K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D INE87_03159 Bacterial trigger factor protein (TF) K03545 tig; trigger factor
D INE87_01807 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D INE87_00820 Telomere recombination K04656 hypF; hydrogenase maturation protein HypF
D INE87_02447 comM; Competence protein ComM K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D INE87_00012 UPF0758 protein K03630 radC; DNA repair protein RadC
D INE87_02923 UPF0758 protein K03630 radC; DNA repair protein RadC
D INE87_03996 RadC-like JAB domain protein K03630 radC; DNA repair protein RadC
D INE87_01793 RmuC family protein K09760 rmuC; DNA recombination protein RmuC
D INE87_03625 AAA ATPase domain protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D INE87_02953 putative protein family protein K07460 yraN; putative endonuclease
D INE87_02851 DNA recombination-mediator protein A K04096 smf; DNA processing protein
D INE87_01302 Phage terminase large subunit K06909 xtmB; phage terminase large subunit
D INE87_01723 rarA; Replication-associated recombination protein A K07478 ycaJ; putative ATPase
D INE87_00087 IS66 Orf2 like protein K07484 K07484; transposase
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D INE87_01334 putative amino acid permease YhdG K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D INE87_01153 bepE_3; Efflux pump membrane transporter BepE K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D INE87_01661 mdtC_1; Multidrug resistance protein MdtC K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D INE87_02613 swrC; Swarming motility protein SwrC K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D INE87_03606 bepE_5; Efflux pump membrane transporter BepE K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D INE87_01738 dtpT; Di-/tripeptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D INE87_00623 putP; High-affinity proline transporter PutP K03307 TC.SSS; solute:Na+ symporter, SSS family
D INE87_02703 sglT_2; Sodium/glucose cotransporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D INE87_02504 Sodium:neurotransmitter symporter family protein K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D INE87_02724 alsT; Amino-acid carrier protein AlsT K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D INE87_01489 Sodium Bile acid symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D INE87_01436 nupX; Putative nucleoside permease NupX K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D INE87_00973 aspT_1; Aspartate/alanine antiporter K07085 K07085; putative transport protein
D INE87_01363 aspT_2; Aspartate/alanine antiporter K07085 K07085; putative transport protein
D INE87_01583 aspT_4; Aspartate/alanine antiporter K07085 K07085; putative transport protein
C 99978 Cell growth
D INE87_03055 Hemerythrin HHE cation binding domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D INE87_03059 Hemerythrin HHE cation binding domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D INE87_02754 envC; Murein hydrolase activator EnvC K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D INE87_02377 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D INE87_03841 PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D INE87_01183 PhoH-like protein K07175 phoH2; PhoH-like ATPase
C 99992 Structural proteins
D INE87_02009 Outer membrane protein (OmpH-like) K06142 hlpA; outer membrane protein
D INE87_02010 skp; Outer membrane p25 K06142 hlpA; outer membrane protein
D INE87_03522 hypothetical protein K06142 hlpA; outer membrane protein
D INE87_03729 Outer membrane protein (OmpH-like) K06142 hlpA; outer membrane protein
D INE87_01428 Barrel-sandwich domain of CusB or HlyD membrane-fusion K01993 ABC-2.TX; HlyD family secretion protein
D INE87_01448 ybhG; UPF0194 membrane protein YbhG K01993 ABC-2.TX; HlyD family secretion protein
D INE87_01189 HlyD family secretion protein K02005 ABC.CD.TX; HlyD family secretion protein
D INE87_01945 macA_1; Macrolide export protein MacA K02005 ABC.CD.TX; HlyD family secretion protein
D INE87_02414 macA_2; Macrolide export protein MacA K02005 ABC.CD.TX; HlyD family secretion protein
D INE87_02727 macA_3; Macrolide export protein MacA K02005 ABC.CD.TX; HlyD family secretion protein
D INE87_03881 macA_4; Macrolide export protein MacA K02005 ABC.CD.TX; HlyD family secretion protein
C 99994 Others
D INE87_03132 putative PhoU-like phosphate-specific transport system accessory protein K02039 phoU; phosphate transport system protein
D INE87_01631 cutC; Copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D INE87_02141 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D INE87_00621 Patatin-like phospholipase K07001 K07001; NTE family protein
D INE87_01935 Patatin-like phospholipase K07001 K07001; NTE family protein
D INE87_02858 Patatin-like phospholipase K07001 K07001; NTE family protein
D INE87_03084 yjjG; Pyrimidine 5'-nucleotidase YjjG K07025 K07025; putative hydrolase of the HAD superfamily
D INE87_02140 sufB; FeS cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D INE87_02138 sufD; FeS cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D INE87_01519 Virulence factor BrkB K07058 K07058; membrane protein
D INE87_02115 sufE; Cysteine desulfuration protein SufE K02426 sufE; cysteine desulfuration protein SufE
D INE87_00386 lemA; Protein LemA K03744 lemA; LemA protein
D INE87_01196 protein of unknown function (DUF368) K08974 K08974; putative membrane protein
D INE87_02577 rclC; Inner membrane protein RclC K21741 rclC; reactive chlorine resistance protein C
C 99997 Function unknown
D INE87_00851 chuR; Anaerobic sulfatase-maturating enzyme K06871 K06871; uncharacterized protein
D INE87_00736 Carboxymuconolactone decarboxylase family protein K06889 K06889; uncharacterized protein
D INE87_01210 hypothetical protein K06889 K06889; uncharacterized protein
D INE87_03335 AAA domain, putative AbiEii toxin, Type IV TA system K06926 K06926; uncharacterized protein
D INE87_00731 Plants and Prokaryotes Conserved (PCC) domain protein K06934 K06934; uncharacterized protein
D INE87_01999 HD domain protein K06950 K06950; uncharacterized protein
D INE87_03501 Putative neutral zinc metallopeptidase K06973 K06973; uncharacterized protein
D INE87_03318 GCN5-related N-acetyl-transferase K06975 K06975; uncharacterized protein
D INE87_03699 putative protein family (UPF0227) K07000 K07000; uncharacterized protein
D INE87_02547 Pyridoxamine 5'-phosphate oxidase K07005 K07005; uncharacterized protein
D INE87_03690 hypothetical protein K07005 K07005; uncharacterized protein
D INE87_03019 TIGR00305: putative toxin-antitoxin system toxin component, PIN family K07063 K07063; uncharacterized protein
D INE87_02451 Polymerase beta, Nucleotidyltransferase K07075 K07075; uncharacterized protein
D INE87_02469 putative nucleotidyltransferase K07075 K07075; uncharacterized protein
D INE87_00501 Nitroreductase family protein K07078 K07078; uncharacterized protein
D INE87_01281 Aldo/keto reductase family protein K07079 K07079; uncharacterized protein
D INE87_03218 Calcineurin-like phosphoesterase superfamily domain protein K07095 K07095; uncharacterized protein
D INE87_02062 Calcineurin-like phosphoesterase K07098 K07098; uncharacterized protein
D INE87_02063 Calcineurin-like phosphoesterase K07098 K07098; uncharacterized protein
D INE87_01040 AAA domain protein K07133 K07133; uncharacterized protein
D INE87_03296 hypothetical protein K07133 K07133; uncharacterized protein
D INE87_03705 AAA domain protein K07133 K07133; uncharacterized protein
D INE87_03974 AAA domain protein K07133 K07133; uncharacterized protein
D INE87_01144 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein
D INE87_02586 protein of unknown function (DUF362) K07138 K07138; uncharacterized protein
D INE87_03704 protein of unknown function (DUF362) K07138 K07138; uncharacterized protein
D INE87_03214 Radical_SAM C-terminal domain protein K07139 K07139; uncharacterized protein
D INE87_00387 Protein of unknown function (DUF418) K07148 K07148; uncharacterized protein
D INE87_00977 Protein of unknown function (DUF418) K07148 K07148; uncharacterized protein
D INE87_01274 Protein of unknown function (DUF418) K07148 K07148; uncharacterized protein
D INE87_00111 C4-type zinc ribbon domain protein K07164 K07164; uncharacterized protein
D INE87_02552 Putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein
D INE87_01437 protein of unknown function (DUF151) K08999 K08999; uncharacterized protein
D INE87_02987 putative protein YqeY K09117 K09117; uncharacterized protein
D INE87_01038 HD domain protein K09163 K09163; uncharacterized protein
D INE87_02310 Metal-independent alpha-mannosidase (GH125) K09704 K09704; uncharacterized protein
D INE87_01181 Protein of unknown function (DUF456) K09793 K09793; uncharacterized protein
D INE87_02896 Protein of unknown function (DUF541) K09807 K09807; uncharacterized protein
D INE87_01511 cvfB; Conserved virulence factor B K00243 K00243; uncharacterized protein
D INE87_01370 yaaA; Peroxide stress resistance protein YaaA K09861 K09861; uncharacterized protein
D INE87_03712 Putative member of DMT superfamily (DUF486) K09922 K09922; uncharacterized protein
D INE87_00840 putative beta-L-arabinofuranosidase K09955 K09955; uncharacterized protein
D INE87_01770 hypBA1; Non-reducing end beta-L-arabinofuranosidase K09955 K09955; uncharacterized protein
D INE87_01128 Trehalose utilization K09992 K09992; uncharacterized protein
D INE87_01112 putative conserved protein (DUF2156) K01163 K01163; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 26, 2024