+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Proteus mirabilis HI4320

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D PMI1888 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D PMI3357 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C PMI1887 era; GTP-binding protein K03595 era; GTPase C PMI3407 putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C PMI0200 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor C PMI3417 nusA; transcription elongation protein (N utilization substance protein A) K02600 nusA; transcription termination/antitermination protein NusA C PMI0083 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C PMI2790 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D PMI0828 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D PMI2334 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D PMI3286 rsmB; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D PMI2496 rsmC; ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D PMI3604 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D PMI0341 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D PMI3056 gidB; methyltransferase (glucose-inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D PMI2078 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D PMI3693 putative tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D PMI3006 conserved hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D PMI1609 rrmA; ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D PMI3373 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D PMI3411 ftsJ; ribosomal RNA large subunit methyltransferase J (cell division protein FtsJ) K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D PMI0427 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D PMI2836 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D PMI0774 putative RNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D PMI2299 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D PMI1848 radical SAM superfamily protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D PMI0216 rumA; 23S rRNA (uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D PMI0678 rumB; putative 23S rRNA (uracil-5-)-methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D PMI2329 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D PMI2985 rluA; putative ribosomal large subunit pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D PMI1340 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D PMI0853 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D PMI0393 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D PMI0890 rluE; ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D PMI2872 rluF; ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D PMI0401 putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C PMI2494 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C PMI1100 rimJ; ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C PMI0384 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM C PMI3181 conserved hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C PMI0707 conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C PMI3624 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C PMI1803 putative methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C PMI0883 conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C PMI1888 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3] C PMI0852 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C PMI3635 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C PMI0338 putative holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C PMI0110 dbpA; ATP-independent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C PMI3424 deaD; cold-shock DEAD box protein A (ATP-dependent RNA helicase) K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C PMI1897 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C PMI1887 era; GTP-binding protein K03595 era; GTPase C PMI3356 engC; probable GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C PMI1841 engA; GTP-binding protein K03977 engA; GTPase C PMI3407 putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] C PMI3366 hflX; GTP-binding protein K03665 hflX; GTPase B Other maturation factors C PMI3291 putative RNA-binding protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C PMI2864 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C PMI3419 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C PMI3416 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP C PMI2156 conserved hypothetical protein K14761 rlbA; ribosome-associated protein C PMI0428 conserved hypothetical protein K09710 ybeB; ribosome-associated protein C PMI0445 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor C PMI3410 putative RNA-binding protein K07574 yhbY; RNA-binding protein C PMI3641 conserved hypothetical protein K09889 yjgA; ribosome-associated protein C PMI0781 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor C PMI3647 probable sigma(54) modulation protein K05808 hpf; ribosome hibernation promoting factor C PMI0391 putative sigma 54 modulation protein K05809 raiA; ribosome-associated inhibitor A C PMI1080 engD; GTP-dependent nucleic acid-binding protein K06942 ychF; ribosome-binding ATPase C PMI0856 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 22, 2025