+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pasteurella multocida subsp. multocida Pm70

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PM1068 dat1; Dat1 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E PM0065 ung; Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PM1319 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PM0381 nth; Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PM1218 mutT; MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PM1154 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PM1068 dat1; Dat1 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E PM0065 ung; Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PM1319 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PM1601 tagI; TagI K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PM1145 fpg; Fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PM0381 nth; Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PM0691 unknown K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E PM0192 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PM1716 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PM1065 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PM1951 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A E PM0429 uvrB; UvrB K03702 uvrB; excinuclease ABC subunit B E PM0857 uvrC; UvrC K03703 uvrC; excinuclease ABC subunit C E PM0411 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PM1065 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] E PM1716 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PM1737 rpoB; RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PM1736 rpoC; RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PM1390 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PM0921 rpoZ; RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PM1041 mfd; Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PM1830 mutS; MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PM0904 mutL; MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E PM1067 mutH; MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E PM0611 sbcB; SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PM0168 xseA; XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PM0534 xseB; XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PM0034 dnaE; DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PM1160 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PM0822 holC; HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PM1216 holA; HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PM1674 holB; HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PM0106 dnaQ; DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PM0364 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E PM0959 hold; Hold K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D DNA ligase E PM1716 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PM0411 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PM1950 ssb; Ssb K03111 ssb; single-strand DNA-binding protein E PM1222 dam; Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PM0516 recB; RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PM0961 recC; RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PM0517 recD; RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PM1817 recA; RecA K03553 recA; recombination protein RecA E PM0977 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PM0976 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PM0978 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PM1137 priA; PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PM1179 priB; PriB K02686 priB; primosomal replication protein N E PM0990 unknown K04067 priC; primosomal replication protein N'' E PM0611 sbcB; SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E PM1817 recA; RecA K03553 recA; recombination protein RecA E PM0252 radA; RadA K04485 radA; DNA repair protein RadA/Sms E PM1159 recF; RecF K03629 recF; DNA replication and repair protein RecF E PM0919 recG; RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PM0192 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PM1867 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PM0206 recR; RecR K06187 recR; recombination protein RecR E PM0332 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PM0096 rdgC; RdgC K03554 rdgC; recombination associated protein RdgC E PM0977 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PM0976 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PM0978 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PM0311 unknown K15342 cas1; CRISP-associated protein Cas1 E PM1126 unknown K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E PM1435 unknown K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PM0841 gyrA; GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PM1476 gyrB; GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PM0615 topA; TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PM1732 hupA; HupA K05787 hupA; DNA-binding protein HU-alpha D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PM0192 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PM1867 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PM0206 recR; RecR K06187 recR; recombination protein RecR F PM1716 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PM1086 fis; Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PM0628 himA; HimA K04764 ihfA; integration host factor subunit alpha F PM0800 himD; HimD K05788 ihfB; integration host factor subunit beta E Supressor F PM0611 sbcB; SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PM1427 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PM1951 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A F PM0429 uvrB; UvrB K03702 uvrB; excinuclease ABC subunit B F PM0872 hns; Hns K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PM0467 dinP; DinP K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D PM1817 recA; RecA K03553 recA; recombination protein RecA D PM1181 lexA; LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D PM0332 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PM1950 ssb; Ssb K03111 ssb; single-strand DNA-binding protein D PM1816 recX; RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PM1059 rep; Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PM0710 dnt; Dnt K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D PM1218 mutT; MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PM1154 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PM0717 nrdA; NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PM0719 nrdB; NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024