+F Repair protein KO
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DNA Repair and Recombination Proteins - Pasteurella multocida subsp. multocida Pm70
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PM1068 dat1; Dat1 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E PM0065 ung; Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PM1319 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PM0381 nth; Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D PM1218 mutT; MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PM1154 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PM1068 dat1; Dat1 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E PM0065 ung; Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PM1319 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PM1601 tagI; TagI K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E PM1145 fpg; Fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E PM0381 nth; Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E PM0691 unknown K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E PM0192 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E PM1716 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E PM1065 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E PM1951 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A
E PM0429 uvrB; UvrB K03702 uvrB; excinuclease ABC subunit B
E PM0857 uvrC; UvrC K03703 uvrC; excinuclease ABC subunit C
E PM0411 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PM1065 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
E PM1716 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F PM1737 rpoB; RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F PM1736 rpoC; RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F PM1390 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F PM0921 rpoZ; RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F PM1041 mfd; Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E PM1830 mutS; MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E PM0904 mutL; MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E PM1067 mutH; MutH K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E PM0611 sbcB; SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E PM0168 xseA; XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E PM0534 xseB; XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E PM0034 dnaE; DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E PM1160 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E PM0822 holC; HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E PM1216 holA; HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E PM1674 holB; HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E PM0106 dnaQ; DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E PM0364 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E PM0959 hold; Hold K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DNA ligase
E PM1716 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E PM0411 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E PM1950 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
E PM1222 dam; Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E PM0516 recB; RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E PM0961 recC; RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E PM0517 recD; RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E PM1817 recA; RecA K03553 recA; recombination protein RecA
E PM0977 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E PM0976 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E PM0978 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E PM1137 priA; PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E PM1179 priB; PriB K02686 priB; primosomal replication protein N
E PM0990 unknown K04067 priC; primosomal replication protein N''
E PM0611 sbcB; SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RecFOR pathway proteins
E PM1817 recA; RecA K03553 recA; recombination protein RecA
E PM0252 radA; RadA K04485 radA; DNA repair protein RadA/Sms
E PM1159 recF; RecF K03629 recF; DNA replication and repair protein RecF
E PM0919 recG; RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E PM0192 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E PM1867 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E PM0206 recR; RecR K06187 recR; recombination protein RecR
E PM0332 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E PM0096 rdgC; RdgC K03554 rdgC; recombination associated protein RdgC
E PM0977 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E PM0976 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E PM0978 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E PM0311 unknown K15342 cas1; CRISP-associated protein Cas1
E PM1126 unknown K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E PM1435 unknown K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F PM0841 gyrA; GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F PM1476 gyrB; GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F PM0615 topA; TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F PM1732 hupA; HupA K05787 hupA; DNA-binding protein HU-alpha
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F PM0192 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F PM1867 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F PM0206 recR; RecR K06187 recR; recombination protein RecR
F PM1716 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F PM1086 fis; Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F PM0628 himA; HimA K04764 ihfA; integration host factor subunit alpha
F PM0800 himD; HimD K05788 ihfB; integration host factor subunit beta
E Supressor
F PM0611 sbcB; SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F PM1427 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F PM1951 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A
F PM0429 uvrB; UvrB K03702 uvrB; excinuclease ABC subunit B
F PM0872 hns; Hns K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D PM0467 dinP; DinP K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D PM1817 recA; RecA K03553 recA; recombination protein RecA
D PM1181 lexA; LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D PM0332 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D PM1950 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
D PM1816 recX; RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D PM1059 rep; Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D PM0710 dnt; Dnt K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D PM1218 mutT; MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PM1154 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PM0717 nrdA; NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PM0719 nrdB; NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024