+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Prunus mume (Japanese apricot)</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        103326357 mRNA cap guanine-N7 methyltransferase 1	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        103332295 mRNA cap guanine-N7 methyltransferase 2	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        103338253 mRNA-capping enzyme isoform X1	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        103338737 LOW QUALITY PROTEIN: cyclin-dependent kinase D-1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
D      Cap binding complex
E        103326753 nuclear cap-binding protein subunit 1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        103328407 nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        103340539 pre-mRNA cleavage factor Im 25 kDa subunit 1	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        103333226 pre-mRNA cleavage factor Im 25 kDa subunit 2	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        103321878 RNA-binding motif protein, X chromosome	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
E        103326706 uncharacterized PE-PGRS family protein PE_PGRS54	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        103329966 protein CLP1 homolog	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        103324504 LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        103339732 polyadenylation and cleavage factor homolog 4 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        103333310 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        103333205 cleavage and polyadenylation specificity factor subunit 2 isoform X1	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        103318907 cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        103318908 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        103318905 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        103325250 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        103331071 uncharacterized protein LOC103331071 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        103329811 WD repeat-containing protein 82 isoform X4	K14962 WDR82; COMPASS component SWD2 
E        103340202 WD repeat-containing protein 82-B isoform X1	K14962 WDR82; COMPASS component SWD2 
E        103318688 serine/threonine-protein phosphatase PP1 isozyme 2-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103324103 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103342457 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103332536 serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103337592 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103343642 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        103338914 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        103338644 cleavage stimulation factor subunit 50 isoform X1	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        103336147 cleavage stimulating factor 64	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        103321132 cleavage stimulation factor subunit 77 isoform X1	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        103319410 uncharacterized protein LOC103319410 isoform X1	K06100 SYMPK; symplekin 
E        103341897 uncharacterized protein LOC103341897 isoform X1	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        103337917 LOW QUALITY PROTEIN: small nuclear ribonucleoprotein-associated protein B-like	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        103321141 small nuclear ribonucleoprotein SmD3b-like	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        103323325 small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        103327085 small nuclear ribonucleoprotein E-like	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        103318976 probable small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        103323476 probable small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        103341760 probable small nuclear ribonucleoprotein G	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        103333205 cleavage and polyadenylation specificity factor subunit 2 isoform X1	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        103318907 cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        103318908 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        103318905 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        103336147 cleavage stimulating factor 64	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        103319410 uncharacterized protein LOC103319410 isoform X1	K06100 SYMPK; symplekin 
E        103341897 uncharacterized protein LOC103341897 isoform X1	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        103327374 transcription elongation factor SPT4 homolog 1-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        103336430 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        103343649 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        103343801 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        103337850 N6-adenosine-methyltransferase MT-A70-like	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        103333180 methyltransferase-like protein 1	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        103334800 methyltransferase-like protein 16 homolog	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        103343115 FKBP12-interacting protein of 37 kDa-like	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        103343090 FKBP12-interacting protein of 37 kDa-like	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        103333766 uncharacterized protein LOC103333766	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
E        103340579 E3 ubiquitin-protein ligase Hakai	K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] 
D      Poly(A) addition factors
E        103320254 nuclear poly(A) polymerase 4	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        103327825 nuclear poly(A) polymerase 4-like	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        103327826 nuclear poly(A) polymerase 4-like isoform X1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        103338749 nuclear poly(A) polymerase 1 isoform X1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        103325217 protein BREAST CANCER SUSCEPTIBILITY 1 homolog	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        103334430 BRCA1-associated RING domain protein 1	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        103329813 LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 41	K13192 RBM26; RNA-binding protein 26 
E        103333806 uncharacterized protein LOC103333806	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        103340199 uncharacterized protein LOC103340199 isoform X2	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        103319079 uncharacterized protein LOC103319079	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
C    Other processing factors
D      103332646 DNA/RNA-binding protein KIN17	K13102 KIN; DNA/RNA-binding protein KIN17 
D      103327922 methyltransferase-like protein 22 isoform X1	K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] 
D      103330300 serrate RNA effector molecule	K27103 SRRT; serrate RNA effector molecule 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        103326744 RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        103342455 RNA-binding protein 8A-like	K12876 RBM8A; RNA-binding protein 8A 
E        103331628 protein mago nashi homolog	K12877 MAGOH; protein mago nashi 
E        103331631 protein mago nashi homolog	K12877 MAGOH; protein mago nashi 
E        103322991 THO complex subunit 4A	K12881 THOC4; THO complex subunit 4 
E        103328588 THO complex subunit 4D isoform X1	K12881 THOC4; THO complex subunit 4 
E        103332697 THO complex subunit 4A-like	K12881 THOC4; THO complex subunit 4 
E        103341958 DEAD-box ATP-dependent RNA helicase 56-like	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        103319692 DEAD-box ATP-dependent RNA helicase 56	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        103321064 LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-3	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        103328722 DEAD-box ATP-dependent RNA helicase 2-like	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        103336774 LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 2-like	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        103342524 DEAD-box ATP-dependent RNA helicase 2-like	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        103337374 histone deacetylase complex subunit SAP18-like	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        103331936 histone deacetylase complex subunit SAP18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        103319104 pinin	K13114 PNN; pinin 
E        103343246 apoptotic chromatin condensation inducer in the nucleus	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        103325674 serine/arginine-rich splicing factor SR45 isoform X1	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        103321983 serine/arginine repetitive matrix protein 1 isoform X2	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        103339041 THO complex subunit 1 isoform X1	K12878 THOC1; THO complex subunit 1 
E        103328660 THO complex subunit 2 isoform X1	K12879 THOC2; THO complex subunit 2 
E        103319352 THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        103322991 THO complex subunit 4A	K12881 THOC4; THO complex subunit 4 
E        103328588 THO complex subunit 4D isoform X1	K12881 THOC4; THO complex subunit 4 
E        103332697 THO complex subunit 4A-like	K12881 THOC4; THO complex subunit 4 
E        103320343 THO complex subunit 5A	K13174 THOC5; THO complex subunit 5 
E        103340734 THO complex subunit 6	K13175 THOC6; THO complex subunit 6 
E        103336333 LOW QUALITY PROTEIN: THO complex subunit 7A-like	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        103340739 enhanced ethylene response protein 5	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        103329885 protein DSS1 HOMOLOG ON CHROMOSOME V-like	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        103338329 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        103330337 transcription and mRNA export factor SUS1	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        103322879 SAC3 family protein B	K23719 SAC3; nuclear mRNA export protein SAC3 
E        103330762 SAC3 family protein C	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        103325629 nuclear-pore anchor	K09291 TPR; nucleoprotein TPR 
E        103319161 protein RAE1	K14298 RAE1; mRNA export factor 
E        103329033 protein RAE1-like	K14298 RAE1; mRNA export factor 
E        103342252 protein RAE1-like	K14298 RAE1; mRNA export factor 
E        103327849 protein transport protein SEC13 homolog B-like	K14004 SEC13; protein transport protein SEC13 
E        103329932 protein transport protein SEC13 homolog B	K14004 SEC13; protein transport protein SEC13 
E        103320217 nuclear pore complex protein NUP85	K14304 NUP85; nuclear pore complex protein Nup85 
E        103323385 nuclear pore complex protein NUP43	K14305 NUP43; nuclear pore complex protein Nup43 
E        103337413 nucleoporin NUP152	K14295 NUP50; nuclear pore complex protein Nup50 
E        103322047 nuclear pore complex protein NUP54	K14308 NUP54; nuclear pore complex protein Nup54 
E        103331677 nuclear pore complex protein NUP62	K14306 NUP62; nuclear pore complex protein Nup62 
E        103332774 nuclear pore complex protein NUP88	K14318 NUP88; nuclear pore complex protein Nup88 
E        103342416 nuclear pore complex protein NUP93A-like	K14309 NUP93; nuclear pore complex protein Nup93 
E        103337885 nuclear pore complex protein NUP98A-like isoform X1	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        103331278 nuclear pore complex protein NUP96	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        103337907 nuclear pore complex protein NUP98A-like	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        103327599 nuclear pore complex protein NUP107 isoform X2	K14301 NUP107; nuclear pore complex protein Nup107 
E        103329235 nuclear pore complex protein NUP133 isoform X1	K14300 NUP133; nuclear pore complex protein Nup133 
E        103334994 uncharacterized protein LOC103334994	K14311 NUP188; nuclear pore complex protein Nup188 
E        103321440 LOW QUALITY PROTEIN: nuclear pore complex protein NUP155	K14312 NUP155; nuclear pore complex protein Nup155 
E        103336787 nuclear pore complex protein NUP160	K14303 NUP160; nuclear pore complex protein Nup160 
E        103327852 nuclear pore complex protein NUP35	K14313 NUP35; nuclear pore complex protein Nup53 
E        103341064 nuclear pore complex protein NUP205	K14310 NUP205; nuclear pore complex protein Nup205 
E        103329799 nuclear pore complex protein GP210	K14314 NUP210; nuclear pore complex protein Nup210 
E        103320338 nuclear pore complex protein NUP214 isoform X1	K14317 NUP214; nuclear pore complex protein Nup214 
E        103339992 nuclear pore complex protein NUP58	K14307 NUPL1; nucleoporin p58/p45 
E        103324296 zinc finger CCCH domain-containing protein 16 isoform X1	K14321 NUPL2; nucleoporin-like protein 2 
E        103325174 uncharacterized protein LOC103325174	K14315 NDC1; nucleoporin NDC1 
E        103337664 protein SEH1	K14299 SEH1; nucleoporin SEH1 
E        103339123 aladin	K14320 AAAS; aladin 
E        103321868 protein GLE1 isoform X1	K18723 GLE1; nucleoporin GLE1 
D      Ran-mediated transport factors
E        103320061 GTP-binding nuclear protein Ran-3	K07936 RAN; GTP-binding nuclear protein Ran 
E        103320077 GTP-binding nuclear protein Ran1B-like	K07936 RAN; GTP-binding nuclear protein Ran 
E        103320078 GTP-binding nuclear protein Ran-3-like	K07936 RAN; GTP-binding nuclear protein Ran 
E        103341016 GTP-binding nuclear protein Ran-3-like	K07936 RAN; GTP-binding nuclear protein Ran 
E        103337831 plant UBX domain-containing protein 10	K18726 FAF2; FAS-associated factor 2 
E        103344238 plant UBX domain-containing protein 10-like	K18726 FAF2; FAS-associated factor 2 
E        103343097 plant UBX domain-containing protein 10-like	K18726 FAF2; FAS-associated factor 2 
E        103325840 cell division cycle protein 48 homolog	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        103342159 cell division control protein 48 homolog D	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        103343449 protein-lysine N-methyltransferase rrg1-like	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        103343454 protein-lysine methyltransferase METTL21B	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        103325981 protein-lysine methyltransferase METTL21D	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        103333512 protein EXPORTIN 1A	K14290 XPO1; exportin-1 
E        103330889 exportin-7	K18460 XPO7; exportin-7 
E        103322802 RAN GTPase-activating protein 2	K14319 RANGAP1; Ran GTPase-activating protein 1 
E        103334123 RAN GTPase-activating protein 1	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        103325041 eukaryotic translation initiation factor 4E-1	K03259 EIF4E; translation initiation factor 4E 
E        103323922 eukaryotic translation initiation factor	K03259 EIF4E; translation initiation factor 4E 
E        103339034 eukaryotic translation initiation factor NCBP	K03259 EIF4E; translation initiation factor 4E 
E        103320583 eukaryotic initiation factor 4A-14-like	K03257 EIF4A; translation initiation factor 4A 
E        103327671 eukaryotic initiation factor 4A-11	K03257 EIF4A; translation initiation factor 4A 
E        103327793 eukaryotic initiation factor 4A-1-like	K03257 EIF4A; translation initiation factor 4A 
E        107881741 eukaryotic initiation factor 4A-11-like	K03257 EIF4A; translation initiation factor 4A 
E        103339926 eukaryotic initiation factor 4A-I	K03257 EIF4A; translation initiation factor 4A 
E        103320721 eukaryotic translation initiation factor-like	K03260 EIF4G; translation initiation factor 4G 
E        103331504 eukaryotic translation initiation factor 4G	K03260 EIF4G; translation initiation factor 4G 
E        103341290 eukaryotic translation initiation factor	K03260 EIF4G; translation initiation factor 4G 
E        103318732 protein PIR	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        103341053 DEAD-box ATP-dependent RNA helicase 52C-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        103339616 DEAD-box ATP-dependent RNA helicase 37-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        103339037 DEAD-box ATP-dependent RNA helicase 37-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        103330307 uncharacterized protein LOC103330307 isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        103322110 uncharacterized protein LOC103322110 isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        103320358 polyadenylate-binding protein 2-like	K13126 PABPC; polyadenylate-binding protein 
E        103327811 polyadenylate-binding protein 4-like	K13126 PABPC; polyadenylate-binding protein 
E        103339773 polyadenylate-binding protein 7 isoform X2	K13126 PABPC; polyadenylate-binding protein 
E        103336271 polyadenylate-binding protein 3-like	K13126 PABPC; polyadenylate-binding protein 
E        103335252 polyadenylate-binding protein 8	K13126 PABPC; polyadenylate-binding protein 
E        103330520 30S ribosomal protein 2, chloroplastic	K13126 PABPC; polyadenylate-binding protein 
E        103320357 DExH-box ATP-dependent RNA helicase DExH11 isoform X1	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        103343603 malignant T-cell-amplified sequence 1-A	K07575 MCTS; malignant T-cell-amplified sequence 
E        103340689 translation machinery-associated protein 22	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        103319133 partner of Y14 and mago	K14294 WIBG; partner of Y14 and mago 
E        103318836 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103326076 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103324939 UBP1-associated protein 2C-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103327690 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103329130 heterogeneous nuclear ribonucleoprotein 1-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103344151 UBP1-associated protein 2A-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103333474 UBP1-associated protein 2B-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103339430 UBP1-associated protein 2C-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        107881029 heterogeneous nuclear ribonucleoprotein A0	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103338578 glycine-rich RNA-binding protein blt801	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103320497 RNA-binding protein Musashi homolog 2-like	K14411 MSI; RNA-binding protein Musashi 
E        103326633 heterogeneous nuclear ribonucleoprotein 1	K14411 MSI; RNA-binding protein Musashi 
E        103323915 heterogeneous nuclear ribonucleoprotein 1	K14411 MSI; RNA-binding protein Musashi 
E        103339890 DAZ-associated protein 1	K14411 MSI; RNA-binding protein Musashi 
E        103329223 heterogeneous nuclear ribonucleoprotein 1-like	K14411 MSI; RNA-binding protein Musashi 
E        103334426 heterogeneous nuclear ribonucleoprotein 1-like	K14411 MSI; RNA-binding protein Musashi 
E        103320085 LOW QUALITY PROTEIN: HBS1-like protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        103318765 protein PELOTA 1 isoform X1	K06965 PELO; protein pelota 
E        103333006 polyadenylate-binding protein 1	K14396 PABPN1; polyadenylate-binding protein 2 
E        103333853 polyadenylate-binding protein 2 isoform X1	K14396 PABPN1; polyadenylate-binding protein 2 
E        103339775 DEAD-box ATP-dependent RNA helicase 38	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        103324632 pre-mRNA-splicing factor SYF1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        103340337 protein MODIFIER OF SNC1 11	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        103319935 transcription factor Pur-alpha 1 isoform X1	K21772 PURA; transcriptional activator protein Pur-alpha 
E        103332561 SAC3 family protein A	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        103322187 eukaryotic peptide chain release factor subunit 1-3-like	K03265 ETF1; peptide chain release factor subunit 1 
E        103322188 eukaryotic peptide chain release factor subunit 1-3-like	K03265 ETF1; peptide chain release factor subunit 1 
E        103330410 eukaryotic peptide chain release factor subunit 1-3	K03265 ETF1; peptide chain release factor subunit 1 
E        103338729 eukaryotic peptide chain release factor GTP-binding subunit ERF3A	K03267 ERF3; peptide chain release factor subunit 3 
E        103328883 regulator of nonsense transcripts 1 homolog isoform X1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        103332422 regulator of nonsense transcripts UPF2	K14327 UPF2; regulator of nonsense transcripts 2 
E        103318999 regulator of nonsense transcripts UPF3-like	K14328 UPF3; regulator of nonsense transcripts 3 
E        103319309 regulator of nonsense transcripts UPF3	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        103321463 serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        103338060 serine/threonine-protein phosphatase PP2A-2 catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        103338268 serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        103339615 serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        103338803 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        103341455 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        103320538 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        103327729 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        103343111 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        103318702 serine/threonine protein phosphatase 2A regulatory subunit B''beta-like	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        103322941 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        103334448 serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X1	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        103320024 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        103321961 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        103321963 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        103329324 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        103329725 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        103332305 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        103339813 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        103340989 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        103334863 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        103335454 serine/threonine-protein kinase SMG1-like	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        103326813 protein SMG7	K14409 SMG7; protein SMG7 
E        103327406 uncharacterized protein LOC103327406 isoform X1	K18734 SMG8; protein SMG8 
E        103333503 protein SMG9-like	K18735 SMG9; protein SMG9 
E        103330307 uncharacterized protein LOC103330307 isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        103322110 uncharacterized protein LOC103322110 isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
C    Factors involved in mRNA localization
D      Cargo complex
E        103323075 pumilio homolog 24	K14844 PUF6; pumilio homology domain family member 6 
E        103320649 myosin-15	K10357 MYO5; myosin V 
E        103318672 myosin-11	K10357 MYO5; myosin V 
E        103326276 myosin-2 isoform X1	K10357 MYO5; myosin V 
E        103340543 myosin-17-like	K10357 MYO5; myosin V 
E        103334375 myosin-6-like	K10357 MYO5; myosin V 
E        103334516 myosin-11-like	K10357 MYO5; myosin V 
E        103323817 LOW QUALITY PROTEIN: myosin-6-like	K10357 MYO5; myosin V 
E        103330583 myosin-12	K10357 MYO5; myosin V 
E        103320522 exosome component 10 isoform X1	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        103320272 far upstream element-binding protein 1 isoform X1	K13210 FUBP; far upstream element-binding protein 
E        103320536 far upstream element-binding protein 2	K13210 FUBP; far upstream element-binding protein 
E        103335403 far upstream element-binding protein 1-like	K13210 FUBP; far upstream element-binding protein 
E        103324230 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        103324261 elongation factor 1-alpha-like	K03231 EEF1A; elongation factor 1-alpha 
E        103324277 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        103332399 elongation factor 1-alpha-like	K03231 EEF1A; elongation factor 1-alpha 
E        103318994 elongation factor 1-gamma	K03233 EEF1G; elongation factor 1-gamma 
E        103318995 elongation factor 1-gamma-like	K03233 EEF1G; elongation factor 1-gamma 
E        103319315 elongation factor 1-gamma-like	K03233 EEF1G; elongation factor 1-gamma 
E        103339125 probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1	K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 
D      Other mRNA localization factors
E        103318732 protein PIR	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        103333759 KH domain-containing protein At4g18375	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        103330024 KH domain-containing protein At4g18375 isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        103327410 KH domain-containing protein At4g18375	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        103319397 RNA-binding KH domain-containing protein PEPPER-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        103335991 KH domain-containing protein At4g18375-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        103318662 flowering locus K homology domain	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        103331570 flowering locus K homology domain-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        103325145 KH domain-containing protein At4g18375-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        103329681 KH domain-containing protein At4g18375-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        103323647 RNA-binding KH domain-containing protein PEPPER	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        103321531 protein argonaute 7 isoform X2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103325357 protein argonaute 2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103323973 protein argonaute 10	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103326434 protein argonaute 5	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103329158 protein argonaute 16	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103330930 protein argonaute 4A-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103330931 protein argonaute 4A-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103338881 protein argonaute 1-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103338882 protein argonaute 1-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103330327 protein argonaute 4	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103329450 protein argonaute 2-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        103325041 eukaryotic translation initiation factor 4E-1	K03259 EIF4E; translation initiation factor 4E 
E        103323922 eukaryotic translation initiation factor	K03259 EIF4E; translation initiation factor 4E 
E        103339034 eukaryotic translation initiation factor NCBP	K03259 EIF4E; translation initiation factor 4E 
E        103328883 regulator of nonsense transcripts 1 homolog isoform X1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        103341053 DEAD-box ATP-dependent RNA helicase 52C-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        103339616 DEAD-box ATP-dependent RNA helicase 37-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        103339037 DEAD-box ATP-dependent RNA helicase 37-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        103331888 DEAD-box ATP-dependent RNA helicase 8	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        103341419 protein decapping 5 isoform X1	K18749 LSM14; protein LSM14 
E        103336679 protein decapping 5-like	K18749 LSM14; protein LSM14 
E        103323612 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        103324027 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        103323682 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        103323611 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        103334861 transportin-1	K18752 TNPO1; transportin-1 
E        103335454 serine/threonine-protein kinase SMG1-like	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        103326813 protein SMG7	K14409 SMG7; protein SMG7 
E        103328648 zinc finger CCCH domain-containing protein 14	K18753 ZFP36L; butyrate response factor 
E        103341536 zinc finger CCCH domain-containing protein 15	K18753 ZFP36L; butyrate response factor 
E        103319150 tristetraprolin-like	K18753 ZFP36L; butyrate response factor 
E        103318836 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103326076 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103324939 UBP1-associated protein 2C-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103327690 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103329130 heterogeneous nuclear ribonucleoprotein 1-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103344151 UBP1-associated protein 2A-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103333474 UBP1-associated protein 2B-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103339430 UBP1-associated protein 2C-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        107881029 heterogeneous nuclear ribonucleoprotein A0	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103338578 glycine-rich RNA-binding protein blt801	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        103321212 la-related protein 1C-like	K18757 LARP1; la-related protein 1 
E        103330388 la-related protein 1A	K18757 LARP1; la-related protein 1 
E        103340396 la-related protein 1C	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        103332371 mRNA-decapping enzyme subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        103328416 mRNA-decapping enzyme-like protein	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        103341736 mRNA-decapping enzyme-like protein	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        103327607 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        103340608 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        103325844 sm-like protein LSM2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        103328641 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        103336323 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        103333918 probable U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        103334338 sm-like protein LSM5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        103341320 sm-like protein LSM36B	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        103330497 sm-like protein LSM7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        103319100 sm-like protein LSM8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        103338937 sm-like protein LSM8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        103320649 myosin-15	K10357 MYO5; myosin V 
E        103318672 myosin-11	K10357 MYO5; myosin V 
E        103326276 myosin-2 isoform X1	K10357 MYO5; myosin V 
E        103340543 myosin-17-like	K10357 MYO5; myosin V 
E        103334375 myosin-6-like	K10357 MYO5; myosin V 
E        103334516 myosin-11-like	K10357 MYO5; myosin V 
E        103323817 LOW QUALITY PROTEIN: myosin-6-like	K10357 MYO5; myosin V 
E        103330583 myosin-12	K10357 MYO5; myosin V 
E        103319401 tubulin alpha chain-like	K07374 TUBA; tubulin alpha 
E        103323401 tubulin alpha-3 chain-like	K07374 TUBA; tubulin alpha 
E        103335038 tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        103339038 tubulin alpha-3 chain isoform X1	K07374 TUBA; tubulin alpha 
E        103335706 tubulin alpha chain-like	K07374 TUBA; tubulin alpha 
E        103329992 tubulin alpha chain-like	K07374 TUBA; tubulin alpha 
E        103331693 CCR4-NOT transcription complex subunit 1 isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        103322558 probable NOT transcription complex subunit VIP2 isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        103338875 CCR4-NOT transcription complex subunit 3 isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        103324642 uncharacterized protein LOC103324642 isoform X1	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        103337728 uncharacterized protein LOC103337728	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        103336757 carbon catabolite repressor protein 4 homolog 4	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        103339619 carbon catabolite repressor protein 4 homolog 1 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        103319668 carbon catabolite repressor protein 4 homolog 1-like	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        103320751 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103322501 putative CCR4-associated factor 1 homolog 8	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103328168 probable CCR4-associated factor 1 homolog 6	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103328280 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103344100 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103344314 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103341247 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103341715 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103343659 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        107880476 putative CCR4-associated factor 1 homolog 8	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103319938 DIS3-like exonuclease 2 isoform X1	K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] 
E        103325680 protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        103329017 protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        103319697 LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        103332422 regulator of nonsense transcripts UPF2	K14327 UPF2; regulator of nonsense transcripts 2 
E        103318999 regulator of nonsense transcripts UPF3-like	K14328 UPF3; regulator of nonsense transcripts 3 
E        103319309 regulator of nonsense transcripts UPF3	K14328 UPF3; regulator of nonsense transcripts 3 
E        103326691 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        103319019 uncharacterized protein LOC103319019 isoform X1	K20102 YTHDF; YTH domain-containing family protein 
E        103325567 YTH domain-containing family protein 2	K20102 YTHDF; YTH domain-containing family protein 
E        103327527 uncharacterized protein LOC103327527	K20102 YTHDF; YTH domain-containing family protein 
E        103324342 uncharacterized protein LOC103324342 isoform X1	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        103320115 oligouridylate-binding protein 1-like	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        103327602 oligouridylate-binding protein 1B	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        103340614 oligouridylate-binding protein 1-like	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        103320358 polyadenylate-binding protein 2-like	K13126 PABPC; polyadenylate-binding protein 
E        103327811 polyadenylate-binding protein 4-like	K13126 PABPC; polyadenylate-binding protein 
E        103339773 polyadenylate-binding protein 7 isoform X2	K13126 PABPC; polyadenylate-binding protein 
E        103336271 polyadenylate-binding protein 3-like	K13126 PABPC; polyadenylate-binding protein 
E        103335252 polyadenylate-binding protein 8	K13126 PABPC; polyadenylate-binding protein 
E        103330520 30S ribosomal protein 2, chloroplastic	K13126 PABPC; polyadenylate-binding protein 
E        103338569 ras GTPase-activating protein-binding protein 1 isoform X1	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        103342052 putative G3BP-like protein isoform X1	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        103330115 ras GTPase-activating protein-binding protein 2-like	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        103334270 putative G3BP-like protein	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        103322370 eukaryotic translation initiation factor 2A	K15026 EIF2A; translation initiation factor 2A 
E        103318763 eukaryotic translation initiation factor 3 subunit B-like	K03253 EIF3B; translation initiation factor 3 subunit B 
E        103320583 eukaryotic initiation factor 4A-14-like	K03257 EIF4A; translation initiation factor 4A 
E        103327671 eukaryotic initiation factor 4A-11	K03257 EIF4A; translation initiation factor 4A 
E        103327793 eukaryotic initiation factor 4A-1-like	K03257 EIF4A; translation initiation factor 4A 
E        107881741 eukaryotic initiation factor 4A-11-like	K03257 EIF4A; translation initiation factor 4A 
E        103339926 eukaryotic initiation factor 4A-I	K03257 EIF4A; translation initiation factor 4A 
E        103321064 LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-3	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        103328722 DEAD-box ATP-dependent RNA helicase 2-like	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        103336774 LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 2-like	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        103342524 DEAD-box ATP-dependent RNA helicase 2-like	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        103320721 eukaryotic translation initiation factor-like	K03260 EIF4G; translation initiation factor 4G 
E        103331504 eukaryotic translation initiation factor 4G	K03260 EIF4G; translation initiation factor 4G 
E        103341290 eukaryotic translation initiation factor	K03260 EIF4G; translation initiation factor 4G 
E        103338724 guanine nucleotide-binding protein subunit beta-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        103340993 tudor domain-containing protein 3	K18404 TDRD3; tudor domain-containing protein 3 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        103328416 mRNA-decapping enzyme-like protein	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        103341736 mRNA-decapping enzyme-like protein	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        103332371 mRNA-decapping enzyme subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        103331888 DEAD-box ATP-dependent RNA helicase 8	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        103319697 LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        103325680 protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        103329017 protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        103327607 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        103340608 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        103325844 sm-like protein LSM2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        103328641 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        103336323 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        103333918 probable U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        103334338 sm-like protein LSM5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        103341320 sm-like protein LSM36B	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        103330497 sm-like protein LSM7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        103319100 sm-like protein LSM8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        103338937 sm-like protein LSM8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        103321269 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        103318564 5'-3' exoribonuclease 4	K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
C    3'-5' decay
D      Core exosome factors
E        103318723 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
E        103333811 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        103333825 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        103338342 putative exosome complex component rrp40	K03681 RRP40; exosome complex component RRP40 
E        103324274 exosome complex component RRP41 homolog	K11600 RRP41; exosome complex component RRP41 
E        103320210 exosome complex exonuclease RRP46 homolog	K12590 RRP46; exosome complex component RRP46 
E        103325554 exosome complex component RRP41-like	K12587 MTR3; exosome complex component MTR3 
E        103325539 exosome complex component RRP41-like	K12587 MTR3; exosome complex component MTR3 
E        103318576 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
E        103329249 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
E        103322034 exosome complex component RRP43	K12586 RRP43; exosome complex component RRP43 
E        103326742 exosome complex component RRP45A-like	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        103340460 exosome complex exonuclease RRP44 homolog A	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        103342295 protein RRP6-like 2	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        103320727 nuclear nucleic acid-binding protein C1D	K12592 C1D; exosome complex protein LRP1 
E        103322239 uncharacterized protein LOC103322239	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
D      TRAMP complex
E        103326213 non-canonical poly(A) RNA polymerase PAPD5	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        103323719 DExH-box ATP-dependent RNA helicase DExH10	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
E        103326252 DExH-box ATP-dependent RNA helicase DExH9	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        103320357 DExH-box ATP-dependent RNA helicase DExH11 isoform X1	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        103336595 tetratricopeptide repeat protein SKI3	K12600 SKI3; superkiller protein 3 
E        103333615 WD repeat-containing protein VIP3	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        103336757 carbon catabolite repressor protein 4 homolog 4	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        103339619 carbon catabolite repressor protein 4 homolog 1 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        103319668 carbon catabolite repressor protein 4 homolog 1-like	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        103331693 CCR4-NOT transcription complex subunit 1 isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        103322558 probable NOT transcription complex subunit VIP2 isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        103338875 CCR4-NOT transcription complex subunit 3 isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        103324642 uncharacterized protein LOC103324642 isoform X1	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        103337728 uncharacterized protein LOC103337728	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        103320751 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103322501 putative CCR4-associated factor 1 homolog 8	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103328168 probable CCR4-associated factor 1 homolog 6	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103328280 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103344100 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103344314 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103341247 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103341715 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103343659 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        107880476 putative CCR4-associated factor 1 homolog 8	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        103321093 cell differentiation protein RCD1 homolog	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        103326412 cell differentiation protein RCD1 homolog	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        103329310 cell differentiation protein RCD1 homolog	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        103341117 CCR4-NOT transcription complex subunit 10	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
E        103334456 ABC transporter I family member 21	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        103344438 ABC transporter I family member 20	K12608 CAF16; CCR4-NOT complex subunit CAF16 
D      Pan complex
D      Other 3'-5' decay factors
E        103319909 poly(A)-specific ribonuclease PARN	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        103334739 uncharacterized CRM domain-containing protein At3g25440, chloroplastic	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        103334689 poly(A)-specific ribonuclease PARN-like	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        103338743 DExH-box ATP-dependent RNA helicase DExH3	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        103339540 DExH-box ATP-dependent RNA helicase DExH1 isoform X1	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        103331027 DExH-box ATP-dependent RNA helicase DExH3	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        103341546 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        103328943 DExH-box ATP-dependent RNA helicase DExH6	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        103330804 cell death-related nuclease 4-like	K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] 
E        103338897 protein NRDE2 homolog	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        103330162 protein RST1	K27498 FOCAD; focadhesin 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        103330900 oligoribonuclease	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
E        103318544 ATP-dependent DNA helicase RecQ-like	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
D      Other RNA degradosome components
E        103320295 cytosolic enolase 3	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        103342240 enolase 1, chloroplastic	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        103333317 enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        103339742 enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        103342318 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        103329828 polyribonucleotide nucleotidyltransferase 2, mitochondrial	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        103320261 ATP-dependent 6-phosphofructokinase 6	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        103324404 LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase 2	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        103340791 ATP-dependent 6-phosphofructokinase 3	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        103333391 ATP-dependent 6-phosphofructokinase 4, chloroplastic	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        103334239 ATP-dependent 6-phosphofructokinase 5, chloroplastic	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        103328051 heat shock 70 kDa protein, mitochondrial-like	K04043 dnaK; molecular chaperone DnaK 
E        103335798 LOW QUALITY PROTEIN: heat shock 70 kDa protein, mitochondrial	K04043 dnaK; molecular chaperone DnaK 
E        103321762 ruBisCO large subunit-binding protein subunit beta, chloroplastic	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        103323829 chaperonin CPN60-2, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        103327704 chaperonin CPN60-like 2, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        103334552 chaperonin CPN60-2, mitochondrial-like	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        103341988 chaperonin 60 subunit beta 4, chloroplastic isoform X1	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        103333811 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        103333825 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        103318723 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        103324274 exosome complex component RRP41 homolog	K11600 RRP41; exosome complex component RRP41 
E        103318576 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
E        103329249 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
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#Last updated: April 25, 2024