+E Transcription factors KO
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Transcription Factors - Pontibacillus sp. HMF3514
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D GS400_06360 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GS400_06370 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GS400_06375 dcm; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
C LysR family
D GS400_12225 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D GS400_12085 LysR family transcriptional regulator K19242 citR; LysR family transcriptional regulator, repressor for citA
D GS400_10240 LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D GS400_18705 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D GS400_05755 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D GS400_16395 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D GS400_17900 spoIIID; sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D GS400_13635 CBS domain-containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D GS400_15195 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GS400_17275 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GS400_17460 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GS400_05690 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GS400_18660 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GS400_07130 substrate-binding domain-containing protein K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D GS400_16495 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D GS400_18725 UTRA domain-containing protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D GS400_09485 UTRA domain-containing protein K03710 K03710; GntR family transcriptional regulator
D GS400_16315 UTRA domain-containing protein K03710 K03710; GntR family transcriptional regulator
D GS400_14935 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D GS400_05765 TetR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D GS400_14695 TetR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
C Lrp/AsnC family
C LuxR family
D GS400_14630 HTH domain-containing protein K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
C MarR family
D GS400_04520 HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D GS400_01540 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D GS400_14625 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D GS400_09660 MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D GS400_05640 merR; Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D GS400_11100 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D GS400_16230 cobalamin-binding domain protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D GS400_11380 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GS400_16205 transcriptional repressor K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D GS400_03430 perR; peroxide-responsive transcriptional repressor PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D GS400_12920 cyclic nucleotide-binding domain-containing protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D GS400_00160 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D GS400_14145 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D GS400_01130 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GS400_01135 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GS400_05810 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GS400_12410 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GS400_01460 metalloregulator ArsR/SmtB family transcription factor K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D GS400_12135 metalloregulator ArsR/SmtB family transcription factor K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D GS400_16805 metalloregulator ArsR/SmtB family transcription factor K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
C PadR family
D GS400_19070 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D GS400_13240 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D GS400_10850 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D GS400_07570 tetratricopeptide repeat protein K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D GS400_02110 GbsR/MarR family transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D GS400_04480 GbsR/MarR family transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D GS400_04525 transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D GS400_00350 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D GS400_06130 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D GS400_02145 PAS domain S-box protein K06714 rocR; arginine utilization regulatory protein
D GS400_01840 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D GS400_09135 codY; GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor
D GS400_19080 helix-turn-helix domain-containing protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D GS400_01640 antitoxin endoai K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D GS400_14990 PRD domain-containing protein K03480 glcT; transcriptional antiterminator
D GS400_17340 PRD domain-containing protein K03483 mtlR; mannitol operon transcriptional activator
D GS400_17510 PTS transporter subunit EIIA K03483 mtlR; mannitol operon transcriptional activator
C Others
D GS400_16155 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D GS400_12860 hypothetical protein K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D GS400_00300 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D GS400_00400 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D GS400_19935 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GS400_19945 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GS400_06415 transcription factor YdeB K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D GS400_13105 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D GS400_19495 ROK family protein K02565 nagC; N-acetylglucosamine repressor
D GS400_13890 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D GS400_16485 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D GS400_16470 tenI; thiazole tautomerase TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D GS400_00635 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D GS400_12155 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D GS400_16735 PspC domain-containing protein K03973 pspC; phage shock protein C
D GS400_16545 hypothetical protein K05311 cggR; central glycolytic genes regulator
D GS400_05100 BMP family ABC transporter substrate-binding protein K05519 med; transcriptional activator of comK gene
D GS400_10985 mtrB; trp RNA-binding attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D GS400_08815 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D GS400_14160 RsfA family transcriptional regulator K06314 rsfA; prespore-specific regulator
D GS400_10430 transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D GS400_15720 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D GS400_14820 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D GS400_07475 hutP; hut operon transcriptional regulator HutP K09683 hutP; hut operon positive regulatory protein
D GS400_17855 hypothetical protein K02250 comK; competence protein ComK
D GS400_17550 competence protein K02250 comK; competence protein ComK
D GS400_04715 competence protein K02250 comK; competence protein ComK
D GS400_08660 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0