+F Repair protein KO #

  DNA Repair and Recombination Proteins - Polaribacter sp. MED152

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MED152_07670 ogt; methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MED152_05350 DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D MED152_05405 phrB; deoxyribodipyrimidine photo-lyase, class I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MED152_00800 ung; uracil DNA glycosylase superfamily protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MED152_09640 HhH-GPD superfamily base excision DNA repair protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MED152_01800 nth; HhH-GPD superfamily base excision DNA repair protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D MED152_00515 S1/P1 nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D MED152_08725 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MED152_07670 ogt; methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MED152_05350 DNA photolyase/cryptochrome, animal cryptochrome and (6-4) photolyase subfamily K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D MED152_05405 phrB; deoxyribodipyrimidine photo-lyase, class I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D MED152_05345 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E MED152_00800 ung; uracil DNA glycosylase superfamily protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MED152_09640 HhH-GPD superfamily base excision DNA repair protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MED152_11989 tag; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E MED152_01800 nth; HhH-GPD superfamily base excision DNA repair protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MED152_10450 xth; exodeoxyribonuclease III (Xth) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E MED152_07910 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E MED152_13454 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MED152_10105 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MED152_04900 uvrA3; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E MED152_01780 uvrA1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E MED152_03455 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E MED152_09500 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E MED152_01615 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MED152_10105 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E MED152_13454 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MED152_04810 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MED152_04805 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MED152_12609 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F MED152_10740 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MED152_08905 mutS3; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E MED152_00795 mutS1; DNA mismatch repair protein, MutS family K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E MED152_01325 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E MED152_07245 dnaE1; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MED152_11814 dnaE3; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MED152_04670 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MED152_00675 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MED152_09190 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MED152_01490 dnaQ1; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MED152_11754 dnaQ5; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MED152_05060 dnaQ3; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MED152_03045 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MED152_13454 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MED152_01615 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MED152_09635 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E MED152_09160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MED152_08735 recA; protein RecA K03553 recA; recombination protein RecA E MED152_06690 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MED152_10285 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MED152_12029 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E MED152_02405 DEAD/DEAH box helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E MED152_08735 recA; protein RecA K03553 recA; recombination protein RecA E MED152_08245 radA; DNA repair protein RadA/Sms K04485 radA; DNA repair protein RadA/Sms E MED152_01345 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E MED152_03355 DEAD/DEAH box helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MED152_07910 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MED152_10500 recO; recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) E MED152_04560 recR; recombination protein RecR K06187 recR; recombination protein RecR E MED152_13259 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E MED152_06690 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MED152_10285 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MED152_12029 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E MED152_09415 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E MED152_02560 protein of unknown function (DUF853) K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MED152_04790 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MED152_12139 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MED152_11284 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F MED152_11904 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F MED152_09645 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F MED152_00230 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MED152_07910 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MED152_10500 recO; recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) F MED152_04560 recR; recombination protein RecR K06187 recR; recombination protein RecR F MED152_13454 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F MED152_02435 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MED152_00240 DEAD/DEAH box helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MED152_04900 uvrA3; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F MED152_01780 uvrA1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F MED152_03455 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MED152_07240 dinP1; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D MED152_08645 dinP3; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D MED152_06580 peptidase S24-like protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D MED152_08735 recA; protein RecA K03553 recA; recombination protein RecA D MED152_13259 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D MED152_09635 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MED152_09160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D MED152_08540 RecX family protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D MED152_10165 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MED152_08725 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MED152_06645 ribonucleoside-diphosphate reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MED152_06650 ribonucleoside-diphosphate reductase small chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D MED152_01365 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024