+F Repair protein KO
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DNA Repair and Recombination Proteins - Penicillium oxalicum
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D POX_g08935 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D POX_b03461 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E POX_h09556 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E POX_a01837 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E POX_a00816 N-glycosylase/DNA lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E POX_d05815 DNA-(apurinic or apyrimidinic site) lyase 1 K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E POX_g09024 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F POX_d05015 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F POX_b02317 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F POX_d04899 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F POX_b02968 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F POX_h09561 hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
E POX_g09063 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E POX_f08441 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E POX_e07105 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E POX_d05060 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E POX_h09758 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E POX_a00246 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E POX_a00247 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F POX_e07178 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F POX_a01142 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F POX_e06279 UV excision repair protein rhp23 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F POX_e06318 RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F POX_d05389 hypothetical protein K10609 CUL4; cullin 4
F POX_d04814 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F POX_h09605 hypothetical protein K15082 RAD7; DNA repair protein RAD7
F POX_h09606 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F POX_c04022 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F POX_b02048 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F POX_a01263 DNA-directed RNA polymerase II subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F POX_g08661 DNA-directed RNA polymerase II subunit rpb4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F POX_c03736 DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F POX_e06986 DNA-directed RNA polymerases I, II, and III subunit K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F POX_h09804 DNA-directed RNA polymerase II subunit rpb7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F POX_d05230 DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F POX_f08293 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F POX_b02138 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F POX_c04341 DNA-directed RNA polymerase II subunit K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F POX_a01420 DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F POX_e06318 RING-box protein 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F POX_d05389 hypothetical protein K10609 CUL4; cullin 4
F POX_d04814 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F POX_b02486 hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F POX_b02281 DNA repair protein rhp26 K10841 ERCC6; DNA excision repair protein ERCC-6
F POX_e06355 Transcription elongation factor K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E POX_a00508 General transcription and DNA repair factor IIH helicase subunit XPB K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E POX_c03710 General transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E POX_a01391 General transcription and DNA repair factor IIH subunit tcf-29 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E POX_a00867 General transcription and DNA repair factor IIH subunit ssl1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E POX_d05260 General transcription factor IIH subunit 3 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E POX_b02205 General transcription and DNA repair factor IIH subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E POX_g08548 General transcription and DNA repair factor IIH subunit tfb5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E POX_h09600 Serine/threonine-protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E POX_a00289 hypothetical protein K06634 CCNH; cyclin H
E POX_b02432 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E POX_h09575 Replication factor A protein 1 K07466 RFA1; replication factor A1
E POX_d04827 hypothetical protein K10739 RFA2; replication factor A2
D Other NER factors
E POX_a00026 DNA repair protein rad14 K10847 XPA; DNA-repair protein complementing XP-A cells
E POX_a00940 Mating-type switching protein swi10 K10849 ERCC1; DNA excision repair protein ERCC-1
E POX_f07525 DNA repair protein rad16 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E POX_b02745 DNA repair protein rad13 K10846 ERCC5; DNA excision repair protein ERCC-5
E POX_f08441 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E POX_h09796 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E POX_d05795 Cullin-4A K03869 CUL3; cullin 3
E POX_d04903 Elongin-C K03872 ELOC; elongin-C
E POX_f08233 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E POX_b02926 DNA mismatch repair protein msh-2 K08735 MSH2; DNA mismatch repair protein MSH2
E POX_c04260 DNA mismatch repair protein msh3 K08736 MSH3; DNA mismatch repair protein MSH3
E POX_b02355 DNA mismatch repair protein msh6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E POX_d05278 putative MutL protein K08734 MLH1; DNA mismatch repair protein MLH1
E POX_a01304 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E POX_h09455 hypothetical protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E POX_d05015 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E POX_b02317 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E POX_d04899 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E POX_h09575 Replication factor A protein 1 K07466 RFA1; replication factor A1
E POX_d04827 hypothetical protein K10739 RFA2; replication factor A2
D RFC (replication factor C)
E POX_e07246 Replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E POX_g08705 Replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E POX_c04485 Replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E POX_e07248 Replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
E POX_a00034 Replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E POX_g08900 Exodeoxyribonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E POX_f08441 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E POX_a01722 DNA damage-binding protein cmr1 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E POX_d04852 Double-strand break repair protein mus-23 K10865 MRE11; double-strand break repair protein MRE11
E POX_a01356 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E POX_d04852 Double-strand break repair protein mus-23 K10865 MRE11; double-strand break repair protein MRE11
E POX_a01356 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E POX_d05627 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E POX_d05627 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
E POX_c04086 hypothetical protein K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E POX_h09497 DNA repair and recombination protein radC K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E POX_a01784 DNA repair protein rhp54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E POX_c03870 DNA repair and recombination protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E POX_a01133 Bloom syndrome protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E POX_a01133 Bloom syndrome protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E POX_b02559 DNA topoisomerase 3 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E POX_g08771 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E POX_h09575 Replication factor A protein 1 K07466 RFA1; replication factor A1
E POX_d04827 hypothetical protein K10739 RFA2; replication factor A2
D Protein phosphatase 4
E POX_a00338 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E POX_f07558 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E POX_g09141 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E POX_g09240 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E POX_a01089 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E POX_a00192 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E POX_d05438 hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E POX_b02883 Crossover junction endonuclease mus81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E POX_d05635 putative 26S proteasome complex subunit sem-1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E POX_e06274 DNA repair protein SWI5 K10991 SWI5; DNA repair protein Swi5/Sae3
E POX_a00491 Structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E POX_b02837 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E POX_d06046 Chromatin modification-related protein eaf3 K11339 MORF4L1; mortality factor 4-like protein 1
E POX_a01738 Protein SAP1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E POX_b03328 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E POX_e07072 ATP-dependent DNA helicase mph1 K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E POX_a00348 ATP-dependent DNA helicase II subunit 1 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E POX_b02556 ATP-dependent DNA helicase II subunit 2 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E POX_d04852 Double-strand break repair protein mus-23 K10865 MRE11; double-strand break repair protein MRE11
E POX_a01356 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E POX_a00092 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E POX_d05310 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E POX_f08462 hypothetical protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E POX_d05060 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E POX_e06940 hypothetical protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E POX_d04812 hypothetical protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E POX_a01133 Bloom syndrome protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E POX_b02559 DNA topoisomerase 3 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E POX_g08771 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E POX_a00818 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E POX_d05627 DNA repair protein rhp51 K04482 RAD51; DNA repair protein RAD51
E POX_a01602 hypothetical protein K11137 TELO2; telomere length regulation protein
E POX_d05291 hypothetical protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E POX_d04796 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E POX_a00286 hypothetical protein K24752 WDR70; WD repeat-containing protein 70
E POX_a01722 DNA damage-binding protein cmr1 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D POX_a00620 hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D POX_a01545 hypothetical protein K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D POX_b01966 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D POX_a00982 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D POX_g08816 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D POX_a01907 Ubiquitin-conjugating enzyme K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D POX_d05007 Postreplication repair E3 ubiquitin-protein ligase rad18 K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D POX_d05378 DNA repair protein rad5 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D POX_a00655 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D POX_f07522 Ubiquitin-conjugating enzyme E2 N K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D POX_a01728 hypothetical protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D POX_f07943 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D POX_a01357 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D POX_d05913 hypothetical protein K06662 HRAD17; cell cycle checkpoint protein
D POX_g08705 Replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D POX_c04485 Replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D POX_e07248 Replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
D POX_a00034 Replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D POX_a01357 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D POX_b02220 Topoisomerase 1-associated factor 1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D POX_b02152 Chromosome segregation in meiosis protein 3 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D POX_g08780 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D POX_a01602 hypothetical protein K11137 TELO2; telomere length regulation protein
D POX_f08442 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D POX_a00024 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D POX_c04483 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D POX_b02149 hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D POX_d05387 Serine/threonine-protein kinase tel1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D POX_a01816 hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D POX_h09603 DNA damage response protein kinase DUN1 K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D POX_d05802 M-phase inducer phosphatase K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D POX_e06581 14-3-3 protein K06630 YWHAE; 14-3-3 protein epsilon
D POX_b02660 14-3-3 family protein artA K06630 YWHAE; 14-3-3 protein epsilon
D POX_a00436 hypothetical protein K06661 RAD9; DNA repair protein RAD9
D POX_f08181 hypothetical protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D POX_b02778 hypothetical protein K24664 FKH; forkhead protein FKH
D POX_b02975 Vacuolar protein sorting-associated protein 4 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D POX_a01756 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D POX_d05807 hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D POX_h09879 DNA cross-link repair protein pso2/snm1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D POX_c03704 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D POX_b02023 Nuclease PA3 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D POX_b02612 DNA excision repair protein ERCC-6-like 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D POX_d05474 hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D POX_d05853 Pre-mRNA-splicing factor cef1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D POX_e06673 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D POX_d05572 Pre-mRNA-splicing factor prp46 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D POX_e06487 Nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D POX_e07053 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D POX_h09471 Ribonucleoside-diphosphate reductase large chain K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D POX_d05327 Ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D POX_g08935 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D POX_b03461 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E POX_h09556 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E POX_h09481 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E POX_a01417 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E POX_b02588 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E POX_b02588 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D POX_e06487 Nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D POX_e07053 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024