+F Repair protein KO #

  DNA Repair and Recombination Proteins - Paenibacillus sp. 32O-W

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E IJ21_20040 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E IJ21_44120 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E IJ21_24350 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E IJ21_20540 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D IJ21_31240 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IJ21_32810 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IJ21_33860 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IJ21_22050 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D IJ21_31120 AraC family transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D IJ21_31130 cysteine methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E IJ21_20040 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E IJ21_44120 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E IJ21_25460 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E IJ21_37670 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E IJ21_24350 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E IJ21_02390 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] E IJ21_25470 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E IJ21_41310 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E IJ21_16270 single-stranded DNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E IJ21_07040 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E IJ21_37680 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E IJ21_06960 subunit A of excinuclease ABC K03701 uvrA; excinuclease ABC subunit A E IJ21_06950 subunit B of excinuclease ABC K03702 uvrB; excinuclease ABC subunit B E IJ21_13810 subunit C of excinuclease ABC K03703 uvrC; excinuclease ABC subunit C E IJ21_07030 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E IJ21_22820 helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E IJ21_22990 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E IJ21_37680 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E IJ21_07040 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F IJ21_07380 subunit beta of DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F IJ21_07390 subunit beta' of DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F IJ21_07730 subunit alpha of DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F IJ21_02120 subunit delta of DNA-directed RNA polymerase K03048 rpoE; DNA-directed RNA polymerase subunit delta F IJ21_20680 subunit omega of DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F IJ21_03120 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E IJ21_25170 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E IJ21_25730 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 E IJ21_39640 recombination and DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E IJ21_25180 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E IJ21_30020 large subunit of exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E IJ21_30010 small subunit of exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E IJ21_14900 subunit alpha of DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E IJ21_21900 DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E IJ21_03530 subunit beta of DNA polymerase III K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E IJ21_18610 subunit delta of DNA polymerase III K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E IJ21_03350 ATPase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E IJ21_35730 subunit epsilon of DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E IJ21_02030 subunit gamma/tau of DNA polymerase III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E IJ21_07040 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E IJ21_07030 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E IJ21_22820 helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E IJ21_22990 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E IJ21_03900 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E IJ21_17710 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E IJ21_34600 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E IJ21_22260 recombinase RecA K03553 recA; recombination protein RecA E IJ21_16130 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E IJ21_16140 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E IJ21_16120 Holliday junction DNA helicase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E IJ21_20710 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E IJ21_18870 subunit C of exonuclease SbcCD K03546 sbcC; DNA repair protein SbcC/Rad50 E IJ21_18860 subunit D of exonuclease SbcCD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E IJ21_22260 recombinase RecA K03553 recA; recombination protein RecA E IJ21_07160 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E IJ21_03510 DNA recombination protein RecF K03629 recF; DNA replication and repair protein RecF E IJ21_04190 putative ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E IJ21_20910 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E IJ21_16270 single-stranded DNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E IJ21_19050 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E IJ21_02010 recombinase RecR K06187 recR; recombination protein RecR E IJ21_29950 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E IJ21_16130 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E IJ21_16140 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E IJ21_16120 Holliday junction DNA helicase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E IJ21_18850 helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E IJ21_18840 ATP-dependent helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E IJ21_15440 CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E IJ21_47320 CRISPR-associated protein Cas4/endonuclease Cas1 fusion K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E IJ21_18870 subunit C of exonuclease SbcCD K03546 sbcC; DNA repair protein SbcC/Rad50 E IJ21_18860 subunit D of exonuclease SbcCD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E IJ21_43230 DNA repair protein K10979 ku; DNA end-binding protein Ku E IJ21_43250 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E IJ21_43260 DNA polymerase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F IJ21_03470 subunit A of DNA gyrase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F IJ21_03490 subunit B of DNA gyrase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F IJ21_21400 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F IJ21_03040 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta F IJ21_23610 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F IJ21_17610 RecT family protein K07455 recT; recombination protein RecT F IJ21_16270 single-stranded DNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F IJ21_19050 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F IJ21_02010 recombinase RecR K06187 recR; recombination protein RecR F IJ21_07040 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F IJ21_15020 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F IJ21_06960 subunit A of excinuclease ABC K03701 uvrA; excinuclease ABC subunit A F IJ21_06950 subunit B of excinuclease ABC K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D IJ21_20960 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D IJ21_35680 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D IJ21_22260 recombinase RecA K03553 recA; recombination protein RecA D IJ21_25320 Xre family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D IJ21_29950 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D IJ21_03900 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D IJ21_22270 RecX family transcriptional regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D IJ21_24100 DnaQ family exonuclease/dinG family helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D IJ21_29310 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D IJ21_31240 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IJ21_32810 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IJ21_33860 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IJ21_22050 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D IJ21_27830 subunit alpha of ribonucleotide-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D IJ21_30990 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D IJ21_27820 ribonucleotide-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D IJ21_21980 exopolyphosphatase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 29, 2025