+D GENES KO #

  KEGG Orthology (KO) - Palaeococcus pacificus

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:ppac00010] D PAP_01425 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D PAP_04875 phosphofructokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] D PAP_01430 ADP-dependent glucokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] D PAP_03775 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PAP_10130 fructose-1 6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D PAP_09970 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PAP_02855 glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D PAP_04615 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PAP_04825 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PAP_01310 phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PAP_04410 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_01940 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_08515 hypothetical protein K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAP_01340 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAP_04325 porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAP_04330 pyruvate ferredoxin oxidoreductase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAP_04300 pyruvate ferredoxin oxidoreductase subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D PAP_04320 porD; pyuvate ferredoxin oxidoreductase subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAP_05650 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_05665 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_03305 2-oxoacid:ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_05655 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_05670 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_03310 2-oxoacid ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_03610 acetyl CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05270 acetyl-CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05870 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_00035 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05875 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAP_06970 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAP_01450 bifunctional phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAP_09975 glyceraldehyde-3-phosphate:ferredoxin oxidoreductase K11389 gapor; glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) [EC:1.2.7.6] D PAP_03390 aldehyde dehydrogenase K18978 gapN; glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] [EC:1.2.1.90] D PAP_02550 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:ppac00020] D PAP_05650 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_05665 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_03305 2-oxoacid:ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_05655 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_05670 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_03310 2-oxoacid ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_05660 2-oxoglutarate ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D PAP_05675 2-oxoglutarate ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D PAP_05645 2-keto acid:ferredoxin oxidoreductase subunit delta K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D PAP_05865 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D PAP_05860 hypothetical protein K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D PAP_03770 pyruvate carboxylase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D PAP_02550 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D PAP_04325 porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAP_04330 pyruvate ferredoxin oxidoreductase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAP_04300 pyruvate ferredoxin oxidoreductase subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D PAP_04320 porD; pyuvate ferredoxin oxidoreductase subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00030 Pentose phosphate pathway [PATH:ppac00030] D PAP_01425 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D PAP_10255 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D PAP_05755 iron-sulfur cluster assembly protein HesB K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27] D PAP_04405 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D PAP_05030 phosphopentomutase K22199 ppm; phosphopentomutase [EC:5.4.2.7] D PAP_01450 bifunctional phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAP_05980 sugar kinase K21056 E2.7.1.212; alpha-D-ribose-1-phosphate 5-kinase (ADP) [EC:2.7.1.212] D PAP_04815 translation initiation factor IF-2 K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29] D PAP_03630 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D PAP_03390 aldehyde dehydrogenase K18978 gapN; glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] [EC:1.2.1.90] D PAP_08640 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D PAP_00980 aldehyde:ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D PAP_09030 aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D PAP_05185 glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAP_03775 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PAP_10130 fructose-1 6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D PAP_04875 phosphofructokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] D PAP_01430 ADP-dependent glucokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] C 00040 Pentose and glucuronate interconversions D PAP_05850 fructose-bisphosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:ppac00051] D PAP_05140 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D PAP_01445 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D PAP_01450 bifunctional phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAP_06050 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D PAP_02565 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D PAP_05850 fructose-bisphosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D PAP_01435 mannosyl-3-phosphoglycerate synthase K05947 E2.4.1.217; mannosyl-3-phosphoglycerate synthase [EC:2.4.1.217] D PAP_01440 hypothetical protein K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70] D PAP_03775 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PAP_10130 fructose-1 6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D PAP_09970 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:ppac00052] D PAP_04120 hypothetical protein K00849 galK; galactokinase [EC:2.7.1.6] D PAP_04155 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D PAP_04760 NDP-sugar dehydratase or epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PAP_09875 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PAP_01450 bifunctional phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:ppac00500] D PAP_04145 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D PAP_04985 glycogen synthase K20812 glgA; glycogen synthase [EC:2.4.1.242] D PAP_06820 1,4-alpha-glucan branching protein K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D PAP_02420 alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D PAP_00275 alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1] D PAP_04995 hypothetical protein K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D PAP_09225 4-alpha-glucanotransferase K22451 jgt; 4-alpha-glucanotransferase [EC:2.4.1.25] D PAP_01075 hypothetical protein K00701 cgt; cyclomaltodextrin glucanotransferase [EC:2.4.1.19] D PAP_05120 trehalose synthase K13057 treT; trehalose synthase [EC:2.4.1.245] D PAP_01450 bifunctional phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAP_01425 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D PAP_05140 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ppac00520] D PAP_05140 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D PAP_06865 glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAP_01040 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D PAP_06275 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D PAP_07020 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PAP_07025 NDP-sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D PAP_01450 bifunctional phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAP_04120 hypothetical protein K00849 galK; galactokinase [EC:2.7.1.6] D PAP_04155 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D PAP_04760 NDP-sugar dehydratase or epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PAP_09875 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D PAP_01425 glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D PAP_06050 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D PAP_02565 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D PAP_01445 cpsB; mannose-1-phosphate guanyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] C 00620 Pyruvate metabolism [PATH:ppac00620] D PAP_04325 porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAP_04330 pyruvate ferredoxin oxidoreductase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAP_04300 pyruvate ferredoxin oxidoreductase subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D PAP_04320 porD; pyuvate ferredoxin oxidoreductase subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAP_05650 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_05665 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_03305 2-oxoacid:ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_05655 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_05670 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_03310 2-oxoacid ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_08515 hypothetical protein K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAP_01590 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D PAP_03610 acetyl CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05270 acetyl-CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05870 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_00035 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05875 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAP_06970 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAP_03015 hypothetical protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D PAP_09370 NAD-dependent malic enzyme 4 K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D PAP_07985 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D PAP_03770 pyruvate carboxylase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D PAP_05865 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D PAP_05860 hypothetical protein K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D PAP_00835 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PAP_02550 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D PAP_01340 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ppac00630] D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAP_04845 hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D PAP_04855 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D PAP_06105 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D PAP_05830 glyoxylate reductase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D PAP_08045 2-hydroxyacid dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D PAP_08335 phosphoglycolate phosphatase K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18] D PAP_06885 Ribulose bisphosphate carboxylase K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D PAP_01370 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAP_03270 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAP_02650 glycine dehydrogenase subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D PAP_02655 glycine dehydrogenase subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D PAP_00230 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAP_00220 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D PAP_05185 glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAP_03225 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit C 00640 Propanoate metabolism [PATH:ppac00640] D PAP_03610 acetyl CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05270 acetyl-CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05870 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_00035 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05875 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAP_06970 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAP_04325 porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAP_04330 pyruvate ferredoxin oxidoreductase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAP_04300 pyruvate ferredoxin oxidoreductase subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D PAP_04320 porD; pyuvate ferredoxin oxidoreductase subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAP_04390 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_04910 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_09565 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_04845 hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D PAP_04855 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D PAP_06105 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] C 00650 Butanoate metabolism [PATH:ppac00650] D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAP_07985 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D PAP_07990 acetyl-CoA carboxylase K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D PAP_07995 hypothetical protein K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D PAP_04900 maleate cis-trans isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1] D PAP_04390 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_04910 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_09565 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_04325 porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAP_04330 pyruvate ferredoxin oxidoreductase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAP_04300 pyruvate ferredoxin oxidoreductase subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D PAP_04320 porD; pyuvate ferredoxin oxidoreductase subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAP_05650 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_05665 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_03305 2-oxoacid:ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_05655 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_05670 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_03310 2-oxoacid ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_04780 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism [PATH:ppac00562] D PAP_05340 bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D PAP_05840 myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D PAP_05835 hypothetical protein K23992 K23992; 1L-myo-inositol 1-phosphate cytidylyltransferase / CDP-L-myo-inositol myo-inositolphosphotransferase [EC:2.7.7.74 2.7.8.34] D PAP_09970 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:ppac00190] D PAP_02400 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D PAP_02405 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D PAP_02410 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D PAP_01510 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D PAP_01515 NADH dehydrogenase K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D PAP_02395 NADH dehydrogenase K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D PAP_02415 NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D PAP_02390 NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D PAP_09425 V-type ATP synthase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D PAP_09430 V-type ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D PAP_09415 V-type ATP synthase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D PAP_09435 ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D PAP_09410 hypothetical protein K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D PAP_09420 V-type ATP synthase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D PAP_09395 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D PAP_09400 hypothetical protein K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D PAP_09405 V-type ATP synthase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D PAP_00795 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:ppac00710] D PAP_06885 Ribulose bisphosphate carboxylase K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D PAP_04615 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PAP_02855 glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D PAP_03775 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PAP_10255 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D PAP_09970 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PAP_00835 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] C 00720 Other carbon fixation pathways [PATH:ppac00720] D PAP_04325 porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAP_04330 pyruvate ferredoxin oxidoreductase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAP_04300 pyruvate ferredoxin oxidoreductase subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D PAP_04320 porD; pyuvate ferredoxin oxidoreductase subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAP_01340 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAP_00835 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PAP_03770 pyruvate carboxylase K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D PAP_05865 fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D PAP_05860 hypothetical protein K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D PAP_08545 hypothetical protein K18210 tfrB; fumarate reductase (CoM/CoB) subunit B [EC:1.3.4.1] D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAP_05650 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_05665 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_03305 2-oxoacid:ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D PAP_05655 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_05670 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_03310 2-oxoacid ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D PAP_05660 2-oxoglutarate ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D PAP_05675 2-oxoglutarate ferredoxin oxidoreductase subunit gamma K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D PAP_05645 2-keto acid:ferredoxin oxidoreductase subunit delta K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D PAP_04845 hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D PAP_06105 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D PAP_04855 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D PAP_00975 oxidoreductase K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit C 00680 Methane metabolism [PATH:ppac00680] D PAP_03225 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit D PAP_03230 formate dehydrogenase subunit alpha K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6] D PAP_00975 oxidoreductase K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D PAP_03270 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAP_05185 glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAP_04410 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_01940 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_00835 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D PAP_03775 fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D PAP_10130 fructose-1 6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D PAP_04875 phosphofructokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] D PAP_01430 ADP-dependent glucokinase K00918 pfkC; ADP-dependent phosphofructokinase/glucokinase [EC:2.7.1.146 2.7.1.147] D PAP_05755 iron-sulfur cluster assembly protein HesB K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27] D PAP_04325 porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAP_04330 pyruvate ferredoxin oxidoreductase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAP_04300 pyruvate ferredoxin oxidoreductase subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D PAP_04320 porD; pyuvate ferredoxin oxidoreductase subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D PAP_01340 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D PAP_04825 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PAP_01310 phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PAP_00470 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAP_04565 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D PAP_09195 L-tyrosine decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00910 Nitrogen metabolism [PATH:ppac00910] D PAP_08955 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D PAP_09695 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAP_01370 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAP_03215 glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D PAP_00200 dihydropyrimidine dehydrogenase subunit A K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D PAP_10015 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00920 Sulfur metabolism [PATH:ppac00920] D PAP_09885 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D PAP_09900 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D PAP_04545 hypothetical protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D PAP_01500 cytochrome-c3 hydrogenase subunit gamma K17995 hydG; sulfhydrogenase subunit gamma (sulfur reductase) [EC:1.12.98.4] D PAP_03245 cytochrome-c3 hydrogenase subunit gamma K17995 hydG; sulfhydrogenase subunit gamma (sulfur reductase) [EC:1.12.98.4] D PAP_03240 hydrogenase K17996 hydB; sulfhydrogenase subunit beta (sulfur reductase) [EC:1.12.98.4] D PAP_01505 hydrogenase K17996 hydB; sulfhydrogenase subunit beta (sulfur reductase) [EC:1.12.98.4] D PAP_03255 sulfhydrogenase subunit alpha K17993 hydA; sulfhydrogenase subunit alpha [EC:1.12.1.3 1.12.1.5] D PAP_01490 hydrogenase K17993 hydA; sulfhydrogenase subunit alpha [EC:1.12.1.3 1.12.1.5] D PAP_03250 sulfhydrogenase subunit delta K17994 hydD; sulfhydrogenase subunit delta [EC:1.12.1.3 1.12.1.5] D PAP_01495 hydrogenase K17994 hydD; sulfhydrogenase subunit delta [EC:1.12.1.3 1.12.1.5] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:ppac00061] D PAP_08510 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:ppac00071] D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAP_03325 hypothetical protein K00530 nroR; rubredoxin---NAD(P)+ reductase [EC:1.18.1.4] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:ppac00561] D PAP_05185 glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAP_08525 hypothetical protein K00864 glpK; glycerol kinase [EC:2.7.1.30] D PAP_02600 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] C 00564 Glycerophospholipid metabolism [PATH:ppac00564] D PAP_08540 glycerol-3-phosphate dehydrogenase subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D PAP_02605 glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D PAP_02595 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D PAP_05350 egsA; glycerol-1-phosphate dehydrogenase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] D PAP_08105 geranylgeranyl pyrophosphate synthase K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41] D PAP_00080 ubiA; prenyltransferase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42] D PAP_07885 hypothetical protein K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67] D PAP_07210 digeranylgeranylglycerophospholipid reductase K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11] C 00565 Ether lipid metabolism D PAP_08550 dehydrogenase K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26] C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:ppac00230] D PAP_05030 phosphopentomutase K22199 ppm; phosphopentomutase [EC:5.4.2.7] D PAP_01450 bifunctional phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAP_03630 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D PAP_00605 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PAP_00560 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D PAP_00580 phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D PAP_00540 phosphoribosylformylglycinamidine synthase K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D PAP_00550 phosphoribosylformylglycinamidine synthase K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D PAP_00545 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D PAP_00585 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D PAP_00575 N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D PAP_00660 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D PAP_00600 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D PAP_06405 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PAP_00655 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D PAP_00555 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D PAP_00650 IMP cyclohydrolase K11176 purO; IMP cyclohydrolase [EC:3.5.4.10] D PAP_05610 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAP_00535 inosine 5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D PAP_04695 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PAP_00955 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D PAP_10155 deoxyribonucleotide triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D PAP_00690 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PAP_00695 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PAP_07050 5'-methylthioadenosine phosphorylase K26211 K26211; guanosine phosphorylase [EC:2.4.2.15] D PAP_09525 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAP_06750 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D PAP_08350 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D PAP_05305 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D PAP_04670 thymidine phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D PAP_06620 hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3] D PAP_04180 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PAP_01835 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PAP_07690 kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D PAP_06255 hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D PAP_01545 HIT family hydrolase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D PAP_04980 HIT family hydrolase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D PAP_09900 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D PAP_09885 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D PAP_10015 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:ppac00240] D PAP_09660 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D PAP_09665 aspartate carbamoyltransferase K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D PAP_10215 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D PAP_04340 dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D PAP_10220 dihydroorotate dehydrogenase K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D PAP_00090 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D PAP_05960 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D PAP_08280 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D PAP_04695 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PAP_04675 hypothetical protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D PAP_07855 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2] D PAP_01850 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D PAP_05610 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAP_08445 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D PAP_00890 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D PAP_03105 carbohydrate kinase K21057 E2.7.1.213; cytidine kinase [EC:2.7.1.213] D PAP_04670 thymidine phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D PAP_02270 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D PAP_09525 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAP_08390 cell division protein DedD K01493 comEB; dCMP deaminase [EC:3.5.4.12] D PAP_02575 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D PAP_06680 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D PAP_01565 thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D PAP_10040 apolipoprotein N-acyltransferase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:ppac00250] D PAP_05920 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAP_00610 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D PAP_06730 hypothetical protein K01779 racD; aspartate racemase [EC:5.1.1.13] D PAP_02920 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D PAP_07645 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D PAP_05805 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAP_08180 alanine aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PAP_05305 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D PAP_06405 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D PAP_09660 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D PAP_09665 aspartate carbamoyltransferase K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D PAP_04390 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_04910 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_09565 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_03215 glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D PAP_00200 dihydropyrimidine dehydrogenase subunit A K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D PAP_09695 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAP_01370 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAP_00545 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D PAP_06865 glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAP_00605 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:ppac00260] D PAP_03820 hypothetical protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PAP_07370 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D PAP_09390 hypothetical protein K01733 thrC; threonine synthase [EC:4.2.3.1] D PAP_09515 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D PAP_02560 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D PAP_03270 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAP_05185 glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D PAP_04825 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PAP_01310 phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D PAP_00470 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAP_04565 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D PAP_02545 2-amino-3-ketobutyrate CoA ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D PAP_02555 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D PAP_02650 glycine dehydrogenase subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D PAP_02655 glycine dehydrogenase subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D PAP_00230 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAP_00220 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D PAP_08745 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D PAP_08750 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] C 00270 Cysteine and methionine metabolism [PATH:ppac00270] D PAP_08750 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D PAP_08745 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D PAP_07700 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D PAP_09365 hypothetical protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAP_09505 spermidine synthase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAP_09510 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PAP_00250 5'-methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D PAP_07190 hypothetical protein K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D PAP_04420 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D PAP_00255 N-ethylammeline chlorohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D PAP_04245 mtnA; methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D PAP_07290 hypothetical protein K17462 yrrT; putative AdoMet-dependent methyltransferase [EC:2.1.1.-] D PAP_05360 S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PAP_03820 hypothetical protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PAP_07215 ferredoxin K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin D PAP_05920 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAP_00470 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAP_07195 chromosome partitioning protein ParB K23370 serK; L-serine kinase (ADP) [EC:2.7.1.226] C 00280 Valine, leucine and isoleucine degradation [PATH:ppac00280] D PAP_04310 porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha K00186 vorA; 2-oxoisovalerate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.7] D PAP_04315 2-ketoisovalerate ferredoxin oxidoreductase subunit beta K00187 vorB; 2-oxoisovalerate ferredoxin oxidoreductase beta subunit [EC:1.2.7.7] D PAP_04300 pyruvate ferredoxin oxidoreductase subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D PAP_04305 vorD; 2-ketoisovalerate ferredoxin oxidoreductase subunit delta K00188 vorD; 2-oxoisovalerate ferredoxin oxidoreductase delta subunit [EC:1.2.7.7] D PAP_04845 hypothetical protein K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D PAP_04855 methylmalonyl-CoA mutase K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D PAP_06105 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAP_04780 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis D PAP_08180 alanine aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] C 00300 Lysine biosynthesis [PATH:ppac00300] D PAP_03820 hypothetical protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D PAP_05760 hypothetical protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAP_03640 lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAP_04190 peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D PAP_05045 diaminopimelate aminotransferase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D PAP_04820 aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] C 00310 Lysine degradation D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00220 Arginine biosynthesis [PATH:ppac00220] D PAP_01570 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D PAP_00545 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D PAP_01370 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAP_10015 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D PAP_09695 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAP_05920 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAP_08180 alanine aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PAP_04235 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:ppac00330] D PAP_07925 amidase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D PAP_09500 pyruvoyl-dependent arginine decarboxylase K02626 pdaD; arginine decarboxylase [EC:4.1.1.19] D PAP_08055 arginase K01480 speB; agmatinase [EC:3.5.3.11] D PAP_01660 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D PAP_03020 hypothetical protein K01480 speB; agmatinase [EC:3.5.3.11] D PAP_09510 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D PAP_09365 hypothetical protein K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAP_09505 spermidine synthase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D PAP_03925 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D PAP_05920 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:ppac00340] D PAP_03850 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D PAP_03845 hypothetical protein K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D PAP_03880 phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D PAP_03870 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D PAP_03865 imidazole glycerol phosphate synthase K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D PAP_03875 imidazole glycerol phosphate synthase K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D PAP_03860 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D PAP_03885 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAP_03855 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:ppac00350] D PAP_05920 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAP_03885 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAP_09195 L-tyrosine decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00360 Phenylalanine metabolism [PATH:ppac00360] D PAP_05920 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAP_03885 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00380 Tryptophan metabolism D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ppac00400] D PAP_05920 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAP_03885 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:ppac00410] D PAP_09195 L-tyrosine decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] D PAP_04390 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_04910 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_09565 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_09620 hypothetical protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D PAP_10040 apolipoprotein N-acyltransferase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] C 00430 Taurine and hypotaurine metabolism C 00440 Phosphonate and phosphinate metabolism D PAP_06365 ATP-binding protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] D PAP_09640 ATP-binding protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:ppac00450] D PAP_08750 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D PAP_01245 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D PAP_04385 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PAP_03730 hypothetical protein K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D PAP_09885 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D PAP_03035 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:ppac00460] D PAP_04145 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D PAP_07645 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D PAP_03270 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:ppac00470] D PAP_00545 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D PAP_06730 hypothetical protein K01779 racD; aspartate racemase [EC:5.1.1.13] D PAP_02920 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 00480 Glutathione metabolism [PATH:ppac00480] D PAP_05465 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D PAP_01865 hypothetical protein K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D PAP_09510 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis [PATH:ppac00552] D PAP_06270 hypothetical protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:ppac00543] D PAP_07810 hypothetical protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:ppac00730] D PAP_00665 phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D PAP_03995 hypothetical protein K21219 thiDN; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3] D PAP_08965 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAP_04880 hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAP_04890 thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAP_08900 thiamin biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAP_08770 ribonucleoside-triphosphate reductase K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59] D PAP_03985 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D PAP_03990 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D PAP_03460 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D PAP_06255 hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D PAP_06620 hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3] D PAP_04180 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PAP_01835 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:ppac00740] D PAP_00640 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D PAP_00630 riboflavin deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D PAP_00645 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D PAP_00635 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9] D PAP_07010 hypothetical protein K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161] D PAP_05950 FAD synthase K14656 ribL; FAD synthetase [EC:2.7.7.2] D PAP_03985 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D PAP_06760 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:ppac00750] D PAP_07370 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D PAP_09390 hypothetical protein K01733 thrC; threonine synthase [EC:4.2.3.1] D PAP_09515 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D PAP_02560 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D PAP_00670 pyridoxal biosynthesis protein K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D PAP_00675 glutamine amidotransferase K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:ppac00760] D PAP_00610 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D PAP_00615 quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72] D PAP_00620 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D PAP_09475 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D PAP_05610 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D PAP_07250 nicotinamide-nucleotide adenylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D PAP_10180 NAD synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D PAP_04935 pyrazinamidase/nicotinamidase pxnc K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D PAP_03120 NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D PAP_09990 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D PAP_04900 maleate cis-trans isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1] C 00770 Pantothenate and CoA biosynthesis [PATH:ppac00770] D PAP_02780 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D PAP_09540 hypothetical protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D PAP_00305 pantoate kinase K06982 pok; pantoate kinase [EC:2.7.1.169] D PAP_09620 hypothetical protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D PAP_02915 phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D PAP_00480 phosphopantetheine adenylyltransferase K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D PAP_01010 hypothetical protein K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D PAP_00780 hypothetical protein K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237] D PAP_10040 apolipoprotein N-acyltransferase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] D PAP_09195 L-tyrosine decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00780 Biotin metabolism [PATH:ppac00780] D PAP_08510 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAP_03780 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D PAP_00850 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:ppac00785] D PAP_09175 biotin synthase K09711 lipS1; lipoyl synthase D PAP_08440 biotin synthase K24689 lipS2; lipoyl synthase D PAP_07040 hypothetical protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D PAP_09180 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D PAP_02650 glycine dehydrogenase subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D PAP_02655 glycine dehydrogenase subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D PAP_00230 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAP_00220 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:ppac00790] D PAP_08090 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D PAP_00640 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D PAP_06465 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D PAP_05990 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D PAP_04345 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D PAP_06000 GTP cyclohydrolase K17488 mptA; GTP cyclohydrolase IV [EC:3.5.4.39] D PAP_06330 hypothetical protein K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D PAP_03835 GHMP kinase K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54] D PAP_06080 metallo-beta-lactamase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D PAP_04215 2(4Fe-4S) ferredoxin K18853 dmrX; dihydromethanopterin reductase (acceptor) [EC:1.5.99.15] D PAP_06685 6-pyruvoyl tetrahydropterin synthase K22102 E4.1.2.59; dihydroneopterin phosphate aldolase [EC:4.1.2.59] D PAP_07490 hypothetical protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PAP_02830 molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D PAP_01375 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D PAP_06570 molybdopterin adenylyltransferase K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D PAP_06565 molybdenum cofactor biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D PAP_07745 molybdenum cofactor biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D PAP_01390 hypothetical protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:ppac00670] D PAP_03270 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D PAP_00230 glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D PAP_01565 thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:ppac00860] D PAP_02340 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAP_09465 hypothetical protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D PAP_03955 cobaltochelatase K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D PAP_06725 cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D PAP_06220 cobinamide adenolsyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D PAP_03170 cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D PAP_03205 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D PAP_03150 adenosylcobinamide amidohydrolase K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90] D PAP_03175 GTP:adenosylcobinamide-phosphate guanylyltransferase K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62] D PAP_03180 cobalamin synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D PAP_03950 magnesium chelatase K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ppac00130] D PAP_06760 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PAP_07330 hypothetical protein K18534 K18534; MPBQ/MSBQ methyltransferase [EC:2.1.1.295] D PAP_07335 ubiquinone biosynthesis protein UbiE K18534 K18534; MPBQ/MSBQ methyltransferase [EC:2.1.1.295] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:ppac00900] D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAP_04780 hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D PAP_03560 3-hydroxy-3-methylglutaryl-CoA reductase K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] D PAP_01955 mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D PAP_01960 acetylglutamate kinase K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26] D PAP_03700 hypothetical protein K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182] D PAP_03695 hypothetical protein K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182] D PAP_03940 hypothetical protein K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126] D PAP_06760 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D PAP_01970 isopentenyl pyrophosphate isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D PAP_01980 serralysin K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D PAP_02925 UDP-diphosphate synthase K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis D PAP_09870 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PAP_06275 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] C 01054 Nonribosomal peptide structures [PATH:ppac01054] D PAP_06730 hypothetical protein K01779 racD; aspartate racemase [EC:5.1.1.13] D PAP_02920 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:ppac00946] D PAP_04145 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:ppac00261] D PAP_09885 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D PAP_05760 hypothetical protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D PAP_03640 lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:ppac00521] D PAP_01450 bifunctional phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D PAP_05840 myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D PAP_05340 bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D PAP_09870 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PAP_06275 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis D PAP_09870 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D PAP_06275 glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] C 00401 Novobiocin biosynthesis [PATH:ppac00401] D PAP_05920 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAP_03885 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D PAP_08510 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics C 00999 Biosynthesis of various plant secondary metabolites [PATH:ppac00999] D PAP_07700 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D PAP_04145 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:ppac00362] D PAP_02005 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D PAP_07985 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D PAP_07990 acetyl-CoA carboxylase K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D PAP_07995 hypothetical protein K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:ppac00627] D PAP_01590 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D PAP_06760 aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation D PAP_02005 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation [PATH:ppac00633] D PAP_00975 oxidoreductase K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D PAP_04325 porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D PAP_04330 pyruvate ferredoxin oxidoreductase subunit beta K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D PAP_04300 pyruvate ferredoxin oxidoreductase subunit gamma K00189 vorG; 2-oxoisovalerate/pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.7 1.2.7.1] D PAP_04320 porD; pyuvate ferredoxin oxidoreductase subunit delta K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation D PAP_02005 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:ppac03020] D PAP_02710 DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D PAP_02715 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D PAP_02720 DNA-directed RNA polymerase subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D PAP_01900 DNA-directed RNA polymerase subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D PAP_09070 DNA-directed RNA polymerase subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D PAP_00790 DNA-directed RNA polymerase subunit E' K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D PAP_03520 hypothetical protein K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D PAP_02705 rpoH; DNA-directed RNA polymerase subunit H K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D PAP_01935 DNA-directed RNA polymerase subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D PAP_01925 DNA-directed RNA polymerase subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D PAP_02085 DNA-directed RNA polymerase subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] C 03022 Basal transcription factors [PATH:ppac03022] D PAP_03030 tfb; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D PAP_05285 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D PAP_09155 transcription factor K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D PAP_05515 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:ppac03010] D PAP_01945 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D PAP_01740 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D PAP_01890 30S ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D PAP_01815 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D PAP_02740 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D PAP_01790 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D PAP_01920 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D PAP_02760 rps10p; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D PAP_01895 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D PAP_02735 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D PAP_01885 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D PAP_01785 rps14P; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D PAP_03805 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D PAP_01760 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D PAP_01730 rps19p; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D PAP_03790 30S ribosomal protein S3 K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D PAP_01775 30S ribosomal protein S4 K02987 RP-S4e; small subunit ribosomal protein S4e D PAP_10125 30S ribosomal protein S6 K02991 RP-S6e; small subunit ribosomal protein S6e D PAP_02940 30S ribosomal protein S8 K02995 RP-S8e; small subunit ribosomal protein S8e D PAP_06795 rps17E; 30S ribosomal protein S17 K02962 RP-S17e; small subunit ribosomal protein S17e D PAP_04715 30S ribosomal protein S19 K02966 RP-S19e; small subunit ribosomal protein S19e D PAP_00775 30S ribosomal protein S24 K02974 RP-S24e; small subunit ribosomal protein S24e D PAP_03435 rps27e; 30S ribosomal protein S27 K02978 RP-S27e; small subunit ribosomal protein S27e D PAP_00770 30S ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D PAP_04685 30S ribosomal protein S28 K02979 RP-S28e; small subunit ribosomal protein S28e D PAP_02250 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D PAP_01725 rpl2p; 50S ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D PAP_01710 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D PAP_01780 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D PAP_01795 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D PAP_02255 rplP0; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D PAP_02245 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D PAP_02260 rpl12p; 50S ribosomal protein L12 K02869 RP-L12; large subunit ribosomal protein L12 D PAP_01915 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D PAP_01765 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D PAP_01825 50S ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D PAP_01810 50S ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D PAP_01735 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D PAP_01720 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D PAP_01770 rpl24p; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D PAP_01745 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D PAP_01820 rpl30p; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D PAP_01715 rpl4lp; 50S ribosomal protein L4 K02930 RP-L4e; large subunit ribosomal protein L4e D PAP_04680 rpl7ae; 50S ribosomal protein L7 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D PAP_01535 50S ribosomal protein L16 K02866 RP-L10e; large subunit ribosomal protein L10e D PAP_01855 50S ribosomal protein L14 K02875 RP-L14e; large subunit ribosomal protein L14e D PAP_02030 50S ribosomal protein L15 K02877 RP-L15e; large subunit ribosomal protein L15e D PAP_01910 50S ribosomal protein L18 K02883 RP-L18e; large subunit ribosomal protein L18e D PAP_01805 rpl19e; 50S ribosomal protein L19 K02885 RP-L19e; large subunit ribosomal protein L19e D PAP_03525 50S ribosomal protein L21 K02889 RP-L21e; large subunit ribosomal protein L21e D PAP_04690 50S ribosomal protein L24 K02896 RP-L24e; large subunit ribosomal protein L24e D PAP_02725 50S ribosomal protein L30 K02908 RP-L30e; large subunit ribosomal protein L30e D PAP_04740 50S ribosomal protein L31 K02910 RP-L31e; large subunit ribosomal protein L31e D PAP_01800 50S ribosomal protein L32 K02912 RP-L32e; large subunit ribosomal protein L32e D PAP_01845 rpl34e; 50S ribosomal protein L34 K02915 RP-L34e; large subunit ribosomal protein L34e D PAP_03140 hypothetical protein K02917 RP-L35Ae; large subunit ribosomal protein L35Ae D PAP_02990 hypothetical protein K02922 RP-L37e; large subunit ribosomal protein L37e D PAP_02080 rpl37ae; 50S ribosomal protein L37 K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D PAP_04735 rpl39e; 50S ribosomal protein L39 K02924 RP-L39e; large subunit ribosomal protein L39e D PAP_05765 50S ribosomal protein L40 K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D PAP_10045 hypothetical protein K02928 RP-L41e; large subunit ribosomal protein L41e D PAP_03430 rpl44e; 50S ribosomal protein L44 K02929 RP-L44e; large subunit ribosomal protein L44e D PAP_04750 50S ribosomal protein LX K02944 RP-LX; large subunit ribosomal protein LX D PAP_08480 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAP_04355 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAP_04365 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAP_08470 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAP_00055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAP_04110 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:ppac00970] D PAP_04360 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAP_08475 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAP_08025 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAP_09125 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAP_02275 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAP_04060 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAP_05250 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAP_05310 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAP_07080 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAP_02675 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D PAP_00050 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAP_06945 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D PAP_09360 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D PAP_00040 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D PAP_01365 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAP_02880 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAP_00115 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAP_05390 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAP_03830 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAP_05240 tRNA-His K14226 tRNA-His; tRNA His D PAP_01360 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PAP_00495 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAP_01905 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAP_08450 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAP_05325 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAP_08375 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAP_00045 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PAP_05320 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PAP_02670 tRNA-Met K14230 tRNA-Met; tRNA Met D PAP_03705 tRNA-Met K14230 tRNA-Met; tRNA Met D PAP_05335 tRNA-Met K14230 tRNA-Met; tRNA Met D PAP_05385 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D PAP_10090 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAP_01930 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAP_02685 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAP_01880 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAP_02765 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAP_06310 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAP_06950 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAP_02455 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAP_02680 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAP_02690 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAP_10140 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D PAP_10095 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D PAP_06200 tRNA-Val K14237 tRNA-Val; tRNA Val D PAP_09130 tRNA-Val K14237 tRNA-Val; tRNA Val D PAP_06635 tRNA-Val K14237 tRNA-Val; tRNA Val D PAP_02340 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAP_03540 glutamyl-tRNA(Gln) amidotransferase K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] D PAP_03545 glutamyl-tRNA(Gln) amidotransferase K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] D PAP_09580 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAP_06930 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAP_10235 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAP_09115 aspC; aspartyl-tRNA synthetase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] D PAP_04415 asnC; asparaginyl-tRNA synthase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAP_10110 asparagine synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAP_02875 glycyl-tRNA synthetease K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PAP_04260 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAP_04115 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAP_06715 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAP_03035 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAP_09040 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAP_02000 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAP_00935 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAP_07665 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D PAP_07045 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAP_07625 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PAP_04275 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAP_07160 phenylalanyl-tRNA synthetase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAP_07165 phenylalanyl-tRNA synthetase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAP_05480 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAP_00350 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:ppac03060] D PAP_01830 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D PAP_09380 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D PAP_09375 hypothetical protein K03074 secF; preprotein translocase subunit SecF D PAP_04095 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PAP_04210 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D PAP_02235 secE; preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D PAP_00180 hypothetical protein K03105 SRP19; signal recognition particle subunit SRP19 D PAP_03750 anion transporter K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D PAP_09330 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] D PAP_09170 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:ppac04122] D PAP_08965 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAP_08970 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D PAP_01375 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D PAP_07490 hypothetical protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D PAP_08645 molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein D PAP_01000 hypothetical protein K03636 moaD; sulfur-carrier protein D PAP_09025 hypothetical protein K03636 moaD; sulfur-carrier protein D PAP_00990 hypothetical protein K03636 moaD; sulfur-carrier protein D PAP_01005 adenylyltransferase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D PAP_08905 molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D PAP_06230 hypothetical protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D PAP_02830 molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D PAP_06570 molybdopterin adenylyltransferase K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D PAP_04880 hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAP_04890 thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAP_08900 thiamin biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAP_07105 sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein D PAP_08315 hypothetical protein K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6] C 03050 Proteasome [PATH:ppac03050] D PAP_08420 ATPase AAA K03420 psmR; proteasome regulatory subunit D PAP_02055 proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D PAP_07895 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D PAP_06385 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:ppac03018] D PAP_09060 RNA-binding protein K07573 CSL4; exosome complex component CSL4 D PAP_02065 RNA-binding protein K03679 RRP4; exosome complex component RRP4 D PAP_02075 RNA-binding protein K12589 RRP42; exosome complex component RRP42 D PAP_02070 exosome complex exonuclease Rrp41 K11600 RRP41; exosome complex component RRP41 D PAP_04410 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_01940 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_05315 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D PAP_01975 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] B B 09124 Replication and repair C 03030 DNA replication [PATH:ppac03030] D PAP_02330 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101] D PAP_04055 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D PAP_05415 endonuclease K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D PAP_00015 hypothetical protein K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D PAP_00020 DNA polymerase II large subunit K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D PAP_05430 hypothetical protein K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D PAP_05700 DNA primase K02683 priS; DNA primase small subunit [EC:2.7.7.102] D PAP_05705 hypothetical protein K18882 priL; DNA primase large subunit D PAP_03285 DNA polymerase K04802 PCNA; proliferating cell nuclear antigen D PAP_04170 clamp loader protein K04801 rfcS; replication factor C small subunit D PAP_04165 hypothetical protein K04800 rfcL; replication factor C large subunit D PAP_03620 endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D PAP_00300 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03410 Base excision repair [PATH:ppac03410] D PAP_08150 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D PAP_03285 DNA polymerase K04802 PCNA; proliferating cell nuclear antigen D PAP_03620 endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D PAP_00300 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D PAP_04635 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D PAP_03200 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PAP_00315 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PAP_06235 hypothetical protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D PAP_03800 single-stranded DNA endonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03420 Nucleotide excision repair [PATH:ppac03420] D PAP_05515 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PAP_03285 DNA polymerase K04802 PCNA; proliferating cell nuclear antigen D PAP_00300 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03430 Mismatch repair [PATH:ppac03430] D PAP_02835 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D PAP_03800 single-stranded DNA endonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PAP_03285 DNA polymerase K04802 PCNA; proliferating cell nuclear antigen D PAP_00300 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03440 Homologous recombination D PAP_03800 single-stranded DNA endonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03450 Non-homologous end-joining D PAP_03620 endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 D PAP_00785 DNA-directed RNA polymerase subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4 D PAP_02240 nusG; transcription antitermination protein NusG K15172 SUPT5H; transcription elongation factor SPT5 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:ppac02010] D PAP_00385 tungsten ABC transporter permease K05772 tupA; tungstate transport system substrate-binding protein D PAP_00380 ABC transporter permease K05773 tupB; tungstate transport system permease protein D PAP_00375 ABC transporter ATPase K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D PAP_05490 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein D PAP_05495 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D PAP_05500 spermidine/putrescine ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D PAP_00880 ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D PAP_05100 ABC transporter K02063 thiP; thiamine transport system permease protein D PAP_05640 Osmoprotection protein (proX) K05845 opuC; osmoprotectant transport system substrate-binding protein D PAP_05625 Osmoprotection protein (proW-1) K05846 opuBD; osmoprotectant transport system permease protein D PAP_05630 hypothetical protein K05846 opuBD; osmoprotectant transport system permease protein D PAP_05635 ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D PAP_05110 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAP_05175 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAP_08225 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAP_05020 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAP_05000 maltotriose-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D PAP_05005 malf sugar transport inner membrane protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D PAP_05010 hypothetical protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D PAP_04005 sugar-binding protein K07335 bmpA; basic membrane protein A and related proteins D PAP_04015 hypothetical protein K23535 nupB; general nucleoside transport system permease protein D PAP_04020 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D PAP_04010 heme ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D PAP_03900 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAP_03915 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D PAP_03920 hypothetical protein K01998 livM; branched-chain amino acid transport system permease protein D PAP_03905 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAP_03910 branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAP_01685 cobalt transporter K02009 cbiN; cobalt/nickel transport protein D PAP_01680 cobalamin biosynthesis protein K02007 cbiM; cobalt/nickel transport system permease protein D PAP_01690 cobalt ABC transporter permease CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D PAP_01695 ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D PAP_00845 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D PAP_00865 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein D PAP_02980 cobalt ABC transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D PAP_00860 ABC transporter ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D PAP_03480 permease K16905 K16905; fluoroquinolone transport system permease protein D PAP_03475 membrane protein K16906 K16906; fluoroquinolone transport system permease protein D PAP_03470 ATP-binding protein K16907 K16907; fluoroquinolone transport system ATP-binding protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:ppac03070] D PAP_09380 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D PAP_09375 hypothetical protein K03074 secF; preprotein translocase subunit SecF D PAP_01830 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D PAP_04210 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D PAP_04095 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:ppac02020] D PAP_05585 hypothetical protein K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D PAP_09370 NAD-dependent malic enzyme 4 K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D PAP_06825 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D PAP_01370 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAP_04535 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PAP_04500 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D PAP_04930 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D PAP_04495 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D PAP_04520 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAP_04530 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAP_04525 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAP_07020 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D PAP_07025 NDP-sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:ppac02024] D PAP_03900 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAP_03915 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D PAP_03920 hypothetical protein K01998 livM; branched-chain amino acid transport system permease protein D PAP_03905 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAP_03910 branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAP_00630 riboflavin deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D PAP_06335 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAP_10210 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAP_00170 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAP_06340 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAP_10205 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAP_00165 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAP_06345 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAP_10200 hypothetical protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAP_00160 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAP_06350 peptide ABC transporter ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D PAP_10195 peptide ABC transporter ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D PAP_00155 dppD; peptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D PAP_01830 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D PAP_04210 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D PAP_04095 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:ppac02030] D PAP_04500 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D PAP_04930 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D PAP_04520 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAP_04495 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D PAP_04530 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAP_04510 hypothetical protein K03410 cheC; chemotaxis protein CheC D PAP_04515 hypothetical protein K03410 cheC; chemotaxis protein CheC D PAP_04525 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAP_04505 hypothetical protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D PAP_04535 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] C 02040 Flagellar assembly C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D PAP_04410 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_01940 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:ppac04980] D PAP_06725 cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D PAP_04850 GTPase K07588 MMAA; GTPase [EC:3.6.5.-] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance C 01502 Vancomycin resistance C 01503 Cationic antimicrobial peptide (CAMP) resistance B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:ppac01000] C 01001 Protein kinases [BR:ppac01001] D PAP_02845 O-sialoglycoprotein endopeptidase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D PAP_07140 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D PAP_08430 tyrosine-protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D PAP_08800 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D PAP_04520 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:ppac01009] D PAP_05425 translation initiation factor IF-2 K03238 EIF2S2; translation initiation factor 2 subunit 2 D PAP_05360 S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PAP_08790 hypothetical protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D PAP_04565 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:ppac01002] D PAP_04570 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D PAP_03260 protein frxA K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D PAP_09005 hydrogenase maturation protease K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51] D PAP_07055 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D PAP_00690 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PAP_00695 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D PAP_07505 hypothetical protein K07010 K07010; putative glutamine amidotransferase D PAP_00605 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D PAP_06865 glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D PAP_05805 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D PAP_05570 peptidase K26818 pfpI; archaeal arginyl aminopeptidase [EC:3.4.11.27] D PAP_06030 peptidase U34 K14358 SCRN; secernin D PAP_06595 hypothetical protein K07052 K07052; CAAX protease family protein D PAP_07580 hypothetical protein K07052 K07052; CAAX protease family protein D PAP_04200 membrane-associated metalloprotease K07052 K07052; CAAX protease family protein D PAP_01620 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D PAP_04190 peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D PAP_05045 diaminopimelate aminotransferase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D PAP_07630 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D PAP_06735 leucyl aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D PAP_07075 peptidase M32 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D PAP_08265 peptidase M42 K20608 tet; tetrahedral aminopeptidase [EC:3.4.11.-] D PAP_05440 peptidase M42 K20608 tet; tetrahedral aminopeptidase [EC:3.4.11.-] D PAP_07685 protease K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D PAP_08380 hypothetical protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D PAP_08345 hypothetical protein K06974 amzA; archaemetzincin [EC:3.4.-.-] D PAP_05680 hypothetical protein K06974 amzA; archaemetzincin [EC:3.4.-.-] D PAP_08100 peptide transporter K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D PAP_09765 hypothetical protein K06336 tasA; spore coat-associated protein N D PAP_02630 membrane protein K24131 prsW; protease PrsW [EC:3.4.-.-] D PAP_01675 hypothetical protein K01342 aprE; subtilisin [EC:3.4.21.62] D PAP_06815 hypothetical protein K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D PAP_09035 ATPase AAA K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53] D PAP_09330 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] D PAP_09170 hypothetical protein K13280 SEC11; signal peptidase I [EC:3.4.21.89] D PAP_02975 peptidase K04773 sppA; protease IV [EC:3.4.21.-] D PAP_02055 proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D PAP_07895 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D PAP_06385 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D PAP_07645 asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D PAP_06020 zinc-dependent protease K03592 pmbA; PmbA protein D PAP_02465 zinc-dependent protease K03592 pmbA; PmbA protein D PAP_01085 hypothetical protein K03592 pmbA; PmbA protein D PAP_06015 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein D PAP_01090 TLDD - like protein K03568 tldD; TldD protein D PAP_02470 zinc-dependent protease K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:ppac01003] D PAP_08410 hypothetical protein K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15] D PAP_06870 hypothetical protein K21306 aglB; dolichyl-phosphooligosaccharide-protein glycotransferase [EC:2.4.99.21] D PAP_09855 hypothetical protein K21306 aglB; dolichyl-phosphooligosaccharide-protein glycotransferase [EC:2.4.99.21] D PAP_10085 dolichol monophosphate mannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D PAP_07810 hypothetical protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D PAP_01435 mannosyl-3-phosphoglycerate synthase K05947 E2.4.1.217; mannosyl-3-phosphoglycerate synthase [EC:2.4.1.217] C 01005 Lipopolysaccharide biosynthesis proteins [BR:ppac01005] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ppac01011] D PAP_06270 hypothetical protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] C 01004 Lipid biosynthesis proteins [BR:ppac01004] D PAP_08510 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D PAP_03610 acetyl CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05270 acetyl-CoA synthetase K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05870 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_00035 CoA-binding protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D PAP_05875 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D PAP_06970 acetyl-CoA synthetase K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] C 01008 Polyketide biosynthesis proteins [BR:ppac01008] D PAP_06730 hypothetical protein K01779 racD; aspartate racemase [EC:5.1.1.13] D PAP_02920 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:ppac01006] D PAP_01980 serralysin K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] C 01007 Amino acid related enzymes [BR:ppac01007] D PAP_07665 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D PAP_02340 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAP_05480 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAP_00350 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PAP_06715 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAP_07045 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAP_03035 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAP_00935 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAP_09040 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAP_02000 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAP_09115 aspC; aspartyl-tRNA synthetase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] D PAP_04415 asnC; asparaginyl-tRNA synthase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAP_10110 asparagine synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAP_04275 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAP_02875 glycyl-tRNA synthetease K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PAP_04115 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAP_07625 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PAP_04260 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAP_09580 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAP_06930 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAP_10235 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAP_07160 phenylalanyl-tRNA synthetase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAP_07165 phenylalanyl-tRNA synthetase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAP_05920 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D PAP_08180 alanine aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D PAP_06205 aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-] D PAP_03885 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D PAP_02545 2-amino-3-ketobutyrate CoA ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D PAP_04390 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_04910 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D PAP_09565 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:ppac03000] D PAP_05285 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D PAP_05565 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D PAP_00110 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D PAP_08835 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D PAP_03045 hypothetical protein K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D PAP_02500 ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D PAP_06790 ArsR family transcriptional regulator K07721 K07721; ArsR family transcriptional regulator D PAP_08560 transcriptional regulator K07721 K07721; ArsR family transcriptional regulator D PAP_09655 hypothetical protein K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator D PAP_05770 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D PAP_10025 hypothetical protein K10947 K10947; PadR family transcriptional regulator D PAP_02310 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D PAP_04790 hypothetical protein K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D PAP_05085 iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D PAP_03780 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D PAP_00850 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D PAP_01250 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D PAP_08070 transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D PAP_05180 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D PAP_04990 transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D PAP_05115 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D PAP_08205 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D PAP_00345 transcriptional regulator K09714 tfx; HTH-type transcriptional regulator, fmd operon transcriptional regulator D PAP_07765 transcriptional regulator K07728 K07728; putative transcriptional regulator D PAP_06600 cro regulatory protein K07729 K07729; putative transcriptional regulator D PAP_06500 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator D PAP_09615 XRE family transcriptional regulator K07731 K07731; putative transcriptional regulator D PAP_02460 NAD+ synthetase K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D PAP_05575 hypothetical protein K03973 pspC; phage shock protein C C 03021 Transcription machinery [BR:ppac03021] D PAP_03030 tfb; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D PAP_05285 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D PAP_09155 transcription factor K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D PAP_05515 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PAP_00785 DNA-directed RNA polymerase subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4 D PAP_02240 nusG; transcription antitermination protein NusG K15172 SUPT5H; transcription elongation factor SPT5 D PAP_05810 hypothetical protein K24104 GPN; GPN-loop GTPase D PAP_02730 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D PAP_02715 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D PAP_02720 DNA-directed RNA polymerase subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D PAP_02710 DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D PAP_01900 DNA-directed RNA polymerase subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D PAP_00790 DNA-directed RNA polymerase subunit E' K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D PAP_03520 hypothetical protein K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D PAP_02705 rpoH; DNA-directed RNA polymerase subunit H K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D PAP_01935 DNA-directed RNA polymerase subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D PAP_09070 DNA-directed RNA polymerase subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D PAP_01925 DNA-directed RNA polymerase subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D PAP_02085 DNA-directed RNA polymerase subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D PAP_03275 hypothetical protein K03057 tfs; transcription factor S C 03019 Messenger RNA biogenesis [BR:ppac03019] D PAP_00785 DNA-directed RNA polymerase subunit E'' K15171 SUPT4H1; transcription elongation factor SPT4 D PAP_02240 nusG; transcription antitermination protein NusG K15172 SUPT5H; transcription elongation factor SPT5 D PAP_04830 ATPase AAA K13525 VCP; transitional endoplasmic reticulum ATPase D PAP_03595 ATPase AAA K13525 VCP; transitional endoplasmic reticulum ATPase D PAP_07980 mRNA surveillance protein Pelota K06965 PELO; protein pelota D PAP_03645 peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1 D PAP_02755 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D PAP_09060 RNA-binding protein K07573 CSL4; exosome complex component CSL4 D PAP_02065 RNA-binding protein K03679 RRP4; exosome complex component RRP4 D PAP_02070 exosome complex exonuclease Rrp41 K11600 RRP41; exosome complex component RRP41 D PAP_02075 RNA-binding protein K12589 RRP42; exosome complex component RRP42 D PAP_01975 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D PAP_05315 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D PAP_04410 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_01940 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_06850 RNA helicase K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-] C 03041 Spliceosome [BR:ppac03041] D PAP_01470 hypothetical protein K06874 ZPR1; zinc finger protein ZPR1 C 03011 Ribosome [BR:ppac03011] D PAP_03790 30S ribosomal protein S3 K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D PAP_01775 30S ribosomal protein S4 K02987 RP-S4e; small subunit ribosomal protein S4e D PAP_10125 30S ribosomal protein S6 K02991 RP-S6e; small subunit ribosomal protein S6e D PAP_02940 30S ribosomal protein S8 K02995 RP-S8e; small subunit ribosomal protein S8e D PAP_06795 rps17E; 30S ribosomal protein S17 K02962 RP-S17e; small subunit ribosomal protein S17e D PAP_04715 30S ribosomal protein S19 K02966 RP-S19e; small subunit ribosomal protein S19e D PAP_00775 30S ribosomal protein S24 K02974 RP-S24e; small subunit ribosomal protein S24e D PAP_03435 rps27e; 30S ribosomal protein S27 K02978 RP-S27e; small subunit ribosomal protein S27e D PAP_00770 30S ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D PAP_04685 30S ribosomal protein S28 K02979 RP-S28e; small subunit ribosomal protein S28e D PAP_01715 rpl4lp; 50S ribosomal protein L4 K02930 RP-L4e; large subunit ribosomal protein L4e D PAP_04680 rpl7ae; 50S ribosomal protein L7 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D PAP_01535 50S ribosomal protein L16 K02866 RP-L10e; large subunit ribosomal protein L10e D PAP_01855 50S ribosomal protein L14 K02875 RP-L14e; large subunit ribosomal protein L14e D PAP_02030 50S ribosomal protein L15 K02877 RP-L15e; large subunit ribosomal protein L15e D PAP_01910 50S ribosomal protein L18 K02883 RP-L18e; large subunit ribosomal protein L18e D PAP_01805 rpl19e; 50S ribosomal protein L19 K02885 RP-L19e; large subunit ribosomal protein L19e D PAP_03525 50S ribosomal protein L21 K02889 RP-L21e; large subunit ribosomal protein L21e D PAP_04690 50S ribosomal protein L24 K02896 RP-L24e; large subunit ribosomal protein L24e D PAP_02725 50S ribosomal protein L30 K02908 RP-L30e; large subunit ribosomal protein L30e D PAP_04740 50S ribosomal protein L31 K02910 RP-L31e; large subunit ribosomal protein L31e D PAP_01800 50S ribosomal protein L32 K02912 RP-L32e; large subunit ribosomal protein L32e D PAP_01845 rpl34e; 50S ribosomal protein L34 K02915 RP-L34e; large subunit ribosomal protein L34e D PAP_03140 hypothetical protein K02917 RP-L35Ae; large subunit ribosomal protein L35Ae D PAP_02990 hypothetical protein K02922 RP-L37e; large subunit ribosomal protein L37e D PAP_02080 rpl37ae; 50S ribosomal protein L37 K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D PAP_04735 rpl39e; 50S ribosomal protein L39 K02924 RP-L39e; large subunit ribosomal protein L39e D PAP_05765 50S ribosomal protein L40 K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D PAP_10045 hypothetical protein K02928 RP-L41e; large subunit ribosomal protein L41e D PAP_03430 rpl44e; 50S ribosomal protein L44 K02929 RP-L44e; large subunit ribosomal protein L44e D PAP_01945 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D PAP_01740 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D PAP_01890 30S ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D PAP_01815 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D PAP_02740 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D PAP_01790 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D PAP_01920 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D PAP_02760 rps10p; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D PAP_01895 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D PAP_02735 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D PAP_01885 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D PAP_01785 rps14P; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D PAP_03805 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D PAP_01760 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D PAP_01730 rps19p; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D PAP_02250 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D PAP_01725 rpl2p; 50S ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D PAP_01710 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D PAP_01780 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D PAP_01795 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D PAP_02255 rplP0; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D PAP_02245 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D PAP_01915 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D PAP_01765 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D PAP_01825 50S ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D PAP_01810 50S ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D PAP_01735 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D PAP_01720 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D PAP_01770 rpl24p; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D PAP_01745 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D PAP_01820 rpl30p; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D PAP_02260 rpl12p; 50S ribosomal protein L12 K02869 RP-L12; large subunit ribosomal protein L12 D PAP_04750 50S ribosomal protein LX K02944 RP-LX; large subunit ribosomal protein LX D PAP_00055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAP_04110 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAP_08480 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAP_04355 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAP_04365 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAP_08470 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:ppac03009] D PAP_04810 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit K14564 NOP56; nucleolar protein 56 D PAP_03445 ribosome biogenesis protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D PAP_02090 ribonucleotide-diphosphate reductase subunit beta K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 D PAP_01645 hypothetical protein K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D PAP_07135 RNA-processing protein K06961 KRR1; ribosomal RNA assembly protein D PAP_07140 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D PAP_08430 tyrosine-protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D PAP_07690 kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D PAP_03075 ATPase K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 D PAP_03000 hypothetical protein K06943 NOG1; nucleolar GTP-binding protein D PAP_01755 hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D PAP_02045 ribonuclease P K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D PAP_02040 ribonuclease P K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D PAP_00025 hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] D PAP_04745 translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D PAP_01280 nonsense-mediated mRNA decay protein K07562 NMD3; 60S ribosomal export protein NMD3 D PAP_02060 RNA-associated protein K14574 SDO1; ribosome maturation protein SDO1 D PAP_04830 ATPase AAA K13525 VCP; transitional endoplasmic reticulum ATPase D PAP_03595 ATPase AAA K13525 VCP; transitional endoplasmic reticulum ATPase D PAP_09610 hypothetical protein K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 D PAP_06910 GTP-binding protein K03595 era; GTPase D PAP_04805 fibrillin K04795 flpA; fibrillarin-like pre-rRNA processing protein D PAP_04680 rpl7ae; 50S ribosomal protein L7 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D PAP_03025 H/ACA RNA-protein complex protein Gar1 K07569 gar1; RNA-binding protein D PAP_02730 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D PAP_03510 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D PAP_07380 nol1-nop2-sun family nucleolar protein II K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D PAP_05065 rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D PAP_03735 radical SAM protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D PAP_05825 hypothetical protein K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D PAP_03715 30S ribosomal protein S18 K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D PAP_05315 hypothetical protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D PAP_04290 GTP-binding protein HflX K03665 hflX; GTPase D PAP_05785 tRNA threonylcarbamoyladenosine biosynthesis protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PAP_04710 RNA-binding protein K07574 yhbY; RNA-binding protein D PAP_06745 ychF; translation-associated GTPase K06942 ychF; ribosome-binding ATPase D PAP_06090 RNA-binding protein K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-] C 03016 Transfer RNA biogenesis [BR:ppac03016] D PAP_01755 hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D PAP_02045 ribonuclease P K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D PAP_02040 ribonuclease P K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D PAP_04705 ribonuclease P K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5] D PAP_01405 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D PAP_02800 tRNA-splicing ligase RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D PAP_02785 archease K24956 ZBTB8OS; protein archease D PAP_02755 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D PAP_02340 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAP_07625 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D PAP_00935 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D PAP_02000 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAP_03035 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D PAP_07045 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAP_09115 aspC; aspartyl-tRNA synthetase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] D PAP_09580 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAP_06930 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAP_10235 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D PAP_04415 asnC; asparaginyl-tRNA synthase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAP_10110 asparagine synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D PAP_02875 glycyl-tRNA synthetease K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PAP_04260 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D PAP_04115 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D PAP_06715 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D PAP_09040 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D PAP_04275 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D PAP_07160 phenylalanyl-tRNA synthetase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D PAP_07165 phenylalanyl-tRNA synthetase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D PAP_05480 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAP_00350 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D PAP_02225 D-tyrosyl-tRNA(Tyr) deacylase K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D PAP_06615 threonylcarbamoyladenosine tRNA methylthiotransferase K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5] D PAP_03145 hypothetical protein K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] D PAP_10005 nol1-nop2-sun family nucleolar protein III K21971 NSUN6; methyltransferase NSUN6 [EC:2.1.1.-] D PAP_07480 tRNA (guanine-N1)-methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D PAP_02890 tRNA (guanine-N1)-methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D PAP_00190 tRNA methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D PAP_00750 radical SAM protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] D PAP_02950 tRNA wyosine derivatives biosynthesis protein Taw2 K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114] D PAP_00500 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282] D PAP_05245 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282] D PAP_07180 hypothetical protein K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D PAP_01870 H/ACA RNA-protein complex protein Cbf5p K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D PAP_09100 tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D PAP_03530 hypothetical protein K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] D PAP_08965 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAP_02845 O-sialoglycoprotein endopeptidase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D PAP_09980 protein kinase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] D PAP_09590 hypothetical protein K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311] D PAP_05785 tRNA threonylcarbamoyladenosine biosynthesis protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D PAP_04370 hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1 D PAP_02195 hypothetical protein K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5] D PAP_09735 hypothetical protein K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] D PAP_03720 tRNA-splicing endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D PAP_09740 hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D PAP_07665 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D PAP_09545 hypothetical protein K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D PAP_00105 hypothetical protein K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D PAP_01625 nol1-nop2-sun family nucleolar protein III K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-] D PAP_07635 hypothetical protein K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221] D PAP_00370 DNA methyltransferase K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256] D PAP_05445 hypothetical protein K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] D PAP_07235 tRNA methyltransferase K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] D PAP_02790 tRNA methyltransferase K22446 K22446; tRNA (cytosine49-C5)-methyltransferase [EC:2.1.1.-] D PAP_01580 CTU1/ATPBD3 family protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15] D PAP_08970 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D PAP_05925 hypothetical protein K09119 cgi121; KEOPS complex subunit Cgi121 D PAP_02145 hypothetical protein K09741 pcc1; KEOPS complex subunit Pcc1 D PAP_04345 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D PAP_06465 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D PAP_05990 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D PAP_07820 7-cyano-7-deazaguanine tRNA-ribosyltransferase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] D PAP_04880 hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAP_04890 thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAP_08900 thiamin biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D PAP_07755 tRNA(Ile2) 2-agmatinylcytidine synthetase K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22] D PAP_00815 tRNA(Met) cytidine acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] C 03012 Translation factors [BR:ppac03012] D PAP_07145 translation initiation factor 1A K03236 EIF1A; translation initiation factor 1A D PAP_01750 translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1 D PAP_03440 translation initiation factor IF-2 K03237 EIF2S1; translation initiation factor 2 subunit 1 D PAP_05425 translation initiation factor IF-2 K03238 EIF2S2; translation initiation factor 2 subunit 2 D PAP_10120 translation initiation factor IF-2 subunit gamma K03242 EIF2S3; translation initiation factor 2 subunit 3 D PAP_02430 translation initiation factor IF-2 K03680 EIF2B4; translation initiation factor eIF-2B subunit delta D PAP_01655 translation initiation factor 5A K03263 EIF5A; translation initiation factor 5A D PAP_04700 translation initiation factor IF-2 K03243 EIF5B; translation initiation factor 5B D PAP_04745 translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D PAP_02755 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D PAP_00510 effector protein K03232 EEF1B; elongation factor 1-beta D PAP_02745 fusA; elongation factor EF-2 K03234 EEF2; elongation factor 2 D PAP_09280 S-adenosyl-L-methionine:L-histidine 3-amino-3-carboxypropyltransferase K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108] D PAP_02520 hypothetical protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14] D PAP_03190 ATP pyrophosphatase K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14] D PAP_03645 peptide chain release factor 1 K03265 ETF1; peptide chain release factor subunit 1 D PAP_00760 protoporphyrinogen oxidase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D PAP_09105 peptidyl-tRNA hydrolase K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] C 03110 Chaperones and folding catalysts [BR:ppac03110] D PAP_00520 thermosome subunit K22447 cct; archaeal chaperonin D PAP_02850 thermosome subunit K22447 cct; archaeal chaperonin D PAP_04835 heat-shock protein K13993 HSP20; HSP20 family protein D PAP_04755 prefoldin subunit alpha K04797 pfdA; prefoldin alpha subunit D PAP_02155 prefoldin subunit beta K04798 pfdB; prefoldin beta subunit D PAP_08995 hypA; hydrogenase expression protein HupG K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D PAP_01675 hypothetical protein K01342 aprE; subtilisin [EC:3.4.21.62] D PAP_04205 hypothetical protein K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D PAP_08695 thioredoxin K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:ppac04131] D PAP_04695 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D PAP_04830 ATPase AAA K13525 VCP; transitional endoplasmic reticulum ATPase D PAP_03595 ATPase AAA K13525 VCP; transitional endoplasmic reticulum ATPase D PAP_03750 anion transporter K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D PAP_02235 secE; preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D PAP_04825 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D PAP_08515 hypothetical protein K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAP_02755 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha C 04121 Ubiquitin system [BR:ppac04121] D PAP_05765 50S ribosomal protein L40 K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D PAP_00770 30S ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae C 03051 Proteasome [BR:ppac03051] D PAP_02055 proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D PAP_07895 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D PAP_06385 proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D PAP_08420 ATPase AAA K03420 psmR; proteasome regulatory subunit C 03032 DNA replication proteins [BR:ppac03032] D PAP_03285 DNA polymerase K04802 PCNA; proliferating cell nuclear antigen D PAP_03620 endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D PAP_00300 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D PAP_03445 ribosome biogenesis protein Nop10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D PAP_02330 hypothetical protein K02316 dnaG; DNA primase [EC:2.7.7.101] D PAP_00010 cell division control protein Cdc6 K10725 cdc6A; archaeal cell division control protein 6 D PAP_05430 hypothetical protein K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D PAP_05700 DNA primase K02683 priS; DNA primase small subunit [EC:2.7.7.102] D PAP_05705 hypothetical protein K18882 priL; DNA primase large subunit D PAP_03290 hypothetical protein K09723 ginS; DNA replication factor GINS D PAP_05435 hypothetical protein K09723 ginS; DNA replication factor GINS D PAP_04055 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D PAP_05415 endonuclease K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D PAP_00020 DNA polymerase II large subunit K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D PAP_00015 hypothetical protein K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D PAP_04165 hypothetical protein K04800 rfcL; replication factor C large subunit D PAP_04170 clamp loader protein K04801 rfcS; replication factor C small subunit D PAP_07125 DNA topoisomerase VI subunit A K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D PAP_07130 DNA topoisomerase K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] D PAP_05975 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D PAP_08075 reverse gyrase K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-] C 03036 Chromosome and associated proteins [BR:ppac03036] D PAP_01705 methylase K09142 SPOUT1; methyltransferase [EC:2.1.1.-] D PAP_06900 histone K24450 hmf; DNA-binding protein D PAP_02285 histone K24450 hmf; DNA-binding protein D PAP_06100 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D PAP_06095 chromosome segregation protein ScpA K05896 scpA; segregation and condensation protein A D PAP_00060 segregation and condensation protein B K06024 scpB; segregation and condensation protein B D PAP_05935 hypothetical protein K03531 ftsZ; cell division protein FtsZ D PAP_02230 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D PAP_04655 ATP-binding protein K03609 minD; septum site-determining protein MinD D PAP_05815 CDP-4-dehydro-6-deoxy-D-gulose 4-reductase K03609 minD; septum site-determining protein MinD D PAP_03565 phosphodiesterase K03609 minD; septum site-determining protein MinD D PAP_05940 hypothetical protein K03496 parA; chromosome partitioning protein D PAP_04865 recombinase XerC K04763 xerD; integrase/recombinase XerD D PAP_04335 ATPase K03593 mrp; ATP-binding protein involved in chromosome partitioning D PAP_09000 Mrp/NBP35 family nucleotide-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning C 03400 DNA repair and recombination proteins [BR:ppac03400] D PAP_09550 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PAP_08150 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D PAP_03285 DNA polymerase K04802 PCNA; proliferating cell nuclear antigen D PAP_03620 endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D PAP_00300 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D PAP_05515 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D PAP_08050 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PAP_03200 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PAP_00315 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D PAP_04635 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D PAP_06235 hypothetical protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D PAP_07000 hypothetical protein K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D PAP_03800 single-stranded DNA endonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D PAP_02835 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D PAP_07725 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D PAP_07730 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D PAP_07945 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D PAP_10275 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA D PAP_06210 DNA repair protein RadB K04484 radB; DNA repair protein RadB D PAP_03115 hypothetical protein K03552 hjr; holliday junction resolvase [EC:3.1.21.10] D PAP_07735 DNA helicase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D PAP_07720 hypothetical protein K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-] D PAP_00140 dynein regulation protein LC7 K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D PAP_05975 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D PAP_06260 large helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D PAP_06810 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D PAP_09525 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PAP_05450 hypothetical protein K22585 nreA; DNA repair protein NreA C 03029 Mitochondrial biogenesis [BR:ppac03029] D PAP_01755 hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D PAP_02045 ribonuclease P K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D PAP_02040 ribonuclease P K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D PAP_06910 GTP-binding protein K03595 era; GTPase D PAP_05480 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D PAP_02000 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D PAP_02875 glycyl-tRNA synthetease K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D PAP_07045 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D PAP_08965 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D PAP_04335 ATPase K03593 mrp; ATP-binding protein involved in chromosome partitioning D PAP_09000 Mrp/NBP35 family nucleotide-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:ppac02000] D PAP_00385 tungsten ABC transporter permease K05772 tupA; tungstate transport system substrate-binding protein D PAP_00380 ABC transporter permease K05773 tupB; tungstate transport system permease protein D PAP_00375 ABC transporter ATPase K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D PAP_05490 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein D PAP_05495 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D PAP_05500 spermidine/putrescine ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D PAP_00880 ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D PAP_05100 ABC transporter K02063 thiP; thiamine transport system permease protein D PAP_05640 Osmoprotection protein (proX) K05845 opuC; osmoprotectant transport system substrate-binding protein D PAP_05625 Osmoprotection protein (proW-1) K05846 opuBD; osmoprotectant transport system permease protein D PAP_05630 hypothetical protein K05846 opuBD; osmoprotectant transport system permease protein D PAP_05635 ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D PAP_05110 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAP_05175 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAP_08225 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAP_05020 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D PAP_05000 maltotriose-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D PAP_05005 malf sugar transport inner membrane protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D PAP_05010 hypothetical protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D PAP_04005 sugar-binding protein K07335 bmpA; basic membrane protein A and related proteins D PAP_04015 hypothetical protein K23535 nupB; general nucleoside transport system permease protein D PAP_04020 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D PAP_04010 heme ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D PAP_05135 ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D PAP_05160 ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D PAP_08210 MalE-like maltose/maltodextrin ABC transporter K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D PAP_05130 ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D PAP_05165 ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D PAP_08215 sugar transporter K02025 ABC.MS.P; multiple sugar transport system permease protein D PAP_05170 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D PAP_08220 sugar transporter K02026 ABC.MS.P1; multiple sugar transport system permease protein D PAP_05125 ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D PAP_03900 hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D PAP_03915 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D PAP_03920 hypothetical protein K01998 livM; branched-chain amino acid transport system permease protein D PAP_03905 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D PAP_03910 branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D PAP_06335 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAP_10210 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAP_00170 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D PAP_06340 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAP_10205 hypothetical protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAP_00165 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D PAP_06345 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAP_10200 hypothetical protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAP_00160 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D PAP_06350 peptide ABC transporter ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D PAP_10195 peptide ABC transporter ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D PAP_00155 dppD; peptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D PAP_08660 hypothetical protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D PAP_03975 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D PAP_08655 hypothetical protein K02015 ABC.FEV.P; iron complex transport system permease protein D PAP_03970 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D PAP_03965 ABC transporter K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D PAP_08650 hypothetical protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D PAP_03165 hypothetical protein K25034 btuF; cobalamin transport system substrate-binding protein D PAP_06225 hypothetical protein K25034 btuF; cobalamin transport system substrate-binding protein D PAP_06035 iron ABC transporter K25027 btuC; cobalamin transport system permease protein D PAP_06040 iron ABC transporter permease K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D PAP_01685 cobalt transporter K02009 cbiN; cobalt/nickel transport protein D PAP_01690 cobalt ABC transporter permease CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D PAP_01680 cobalamin biosynthesis protein K02007 cbiM; cobalt/nickel transport system permease protein D PAP_01695 ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D PAP_00845 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D PAP_00865 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein D PAP_02980 cobalt ABC transporter ATPase K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D PAP_00860 ABC transporter ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D PAP_06580 hypothetical protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D PAP_06695 ABC transporter K02075 ABC.ZM.P; zinc/manganese transport system permease protein D PAP_06690 ABC transporter K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D PAP_03480 permease K16905 K16905; fluoroquinolone transport system permease protein D PAP_03475 membrane protein K16906 K16906; fluoroquinolone transport system permease protein D PAP_03470 ATP-binding protein K16907 K16907; fluoroquinolone transport system ATP-binding protein [EC:7.6.2.-] D PAP_06585 ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_08860 multidrug transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_08300 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_08305 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_07265 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_08130 ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_06115 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_01260 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_02820 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_02805 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_02585 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D PAP_06590 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAP_08855 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAP_08295 daunorubicin ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAP_07260 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAP_08135 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAP_06120 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAP_02505 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAP_01255 hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAP_02815 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAP_02580 daunorubicin ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D PAP_08730 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D PAP_00930 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D PAP_08735 ABC transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PAP_00920 ABC transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D PAP_02345 iron ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D PAP_06800 damage-inducible protein DinF K26939 norM; MATE family, multidrug efflux pump D PAP_01350 multidrug transporter K26937 dinF; MATE family, multidrug efflux pump D PAP_01345 multidrug transporter MatE K26937 dinF; MATE family, multidrug efflux pump D PAP_10280 hypothetical protein K10716 kch; voltage-gated potassium channel D PAP_03235 formate transporter K21993 fdhC; formate transporter D PAP_08170 Divalent cation transporter, MgtE-like protein K07244 K07244; mgtE-like transporter D PAP_02905 hypothetical protein K06199 crcB; fluoride exporter D PAP_00335 effector of murein hydrolase K06518 cidA; holin-like protein D PAP_03945 sucrose transporter K16211 malY; maltose/moltooligosaccharide transporter D PAP_00130 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family D PAP_06975 hypothetical protein K03298 TC.DME; drug/metabolite transporter, DME family D PAP_10175 hypothetical protein K03298 TC.DME; drug/metabolite transporter, DME family D PAP_00800 cation transporter K07301 yrbG; cation:H+ antiporter D PAP_06740 hypothetical protein K26730 napA; Na+:H+ antiporter D PAP_10105 hypothetical protein K26730 napA; Na+:H+ antiporter D PAP_08985 potassium transporter K26730 napA; Na+:H+ antiporter D PAP_09200 sodium:proton antiporter K26730 napA; Na+:H+ antiporter D PAP_09085 potassium transporter K03498 trkH; trk/ktr system potassium uptake protein D PAP_09385 potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein D PAP_05090 permease K06901 pbuG; adenine/guanine/hypoxanthine permease D PAP_06940 amino acid permease K03834 tyrP; tyrosine-specific transport protein D PAP_01665 hypothetical protein K03281 clcA; chloride channel protein, CIC family D PAP_03750 anion transporter K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D PAP_08690 arsenic transporter K03325 ACR3; arsenite transporter D PAP_02120 cation:proton antiporter K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D PAP_02375 cation:proton antiporter K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D PAP_01120 cation:proton antiporter K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D PAP_02125 cation:proton antiporter K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D PAP_02380 cation:proton antiporter K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D PAP_01125 cation:proton antiporter K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D PAP_01195 cation:proton antiporter K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D PAP_01130 cation:proton antiporter K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D PAP_01200 NADH/Ubiquinone/plastoquinone (complex I) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D PAP_02130 hypothetical protein K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D PAP_02355 cation:proton antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D PAP_01165 cation:proton antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D PAP_01095 cation:proton antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D PAP_02095 hypothetical protein K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D PAP_02360 cation:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D PAP_01100 cation:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D PAP_01170 cation:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D PAP_02100 cation:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D PAP_02365 hypothetical protein K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D PAP_01105 cation:proton antiporter K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D PAP_01175 cation:proton antiporter K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D PAP_02105 cation:proton antiporter K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D PAP_02525 hypothetical protein K24180 mleP; malate permease and related proteins D PAP_09675 hypothetical protein K23675 fmnP; riboflavin transporter D PAP_03345 hypothetical protein K22736 VIT; vacuolar iron transporter family protein D PAP_03320 hypothetical protein K22737 mbfA; erythrin-vacuolar iron transport family protein D PAP_04270 membrane protein K05595 marC; multiple antibiotic resistance protein D PAP_08930 Iron permease FTR1 family K07243 FTR; high-affinity iron transporter D PAP_07985 glutaconyl-CoA decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D PAP_08000 methylmalonyl-CoA carboxyltransferase K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3] D PAP_07990 acetyl-CoA carboxylase K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma D PAP_07995 hypothetical protein K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D PAP_07850 hypothetical protein K06196 ccdA; cytochrome c-type biogenesis protein D PAP_06065 FeoA family protein K04758 feoA; ferrous iron transport protein A D PAP_06060 iron transporter K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:ppac02044] D PAP_04440 hypothetical protein K07325 flaB; archaeal flagellin FlaB D PAP_04445 hypothetical protein K07325 flaB; archaeal flagellin FlaB D PAP_04450 hypothetical protein K07822 flaC; archaeal flagellar protein FlaC D PAP_04455 hypothetical protein K07327 flaD; archaeal flagellar protein FlaD D PAP_04460 hypothetical protein K07329 flaF; archaeal flagellar protein FlaF D PAP_04465 hypothetical protein K07330 flaG; archaeal flagellar protein FlaG D PAP_04470 hypothetical protein K07331 flaH; archaeal flagellar protein FlaH D PAP_04475 hypothetical protein K07332 flaI; archaeal flagellar protein FlaI D PAP_00410 type II/IV secretion system ATPase K07332 flaI; archaeal flagellar protein FlaI D PAP_04480 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ D PAP_00415 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ D PAP_04570 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D PAP_00950 hypothetical protein K02237 comEA; competence protein ComEA D PAP_08390 cell division protein DedD K01493 comEB; dCMP deaminase [EC:3.5.4.12] D PAP_09380 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D PAP_09375 hypothetical protein K03074 secF; preprotein translocase subunit SecF D PAP_10265 hypothetical protein K22228 secG; preprotein translocase subunit SecG D PAP_01830 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D PAP_04095 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D PAP_04210 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor D PAP_02235 secE; preprotein translocase subunit SecE K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D PAP_00180 hypothetical protein K03105 SRP19; signal recognition particle subunit SRP19 C 02042 Bacterial toxins C 02022 Two-component system [BR:ppac02022] D PAP_04520 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAP_04530 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAP_04525 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] C 02035 Bacterial motility proteins [BR:ppac02035] D PAP_04520 hypothetical protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D PAP_04495 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW D PAP_04510 hypothetical protein K03410 cheC; chemotaxis protein CheC D PAP_04515 hypothetical protein K03410 cheC; chemotaxis protein CheC D PAP_04505 hypothetical protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D PAP_04535 hypothetical protein K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D PAP_04525 hypothetical protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D PAP_04530 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D PAP_04500 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D PAP_04930 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D PAP_04440 hypothetical protein K07325 flaB; archaeal flagellin FlaB D PAP_04445 hypothetical protein K07325 flaB; archaeal flagellin FlaB D PAP_04450 hypothetical protein K07822 flaC; archaeal flagellar protein FlaC D PAP_04455 hypothetical protein K07327 flaD; archaeal flagellar protein FlaD D PAP_04460 hypothetical protein K07329 flaF; archaeal flagellar protein FlaF D PAP_04465 hypothetical protein K07330 flaG; archaeal flagellar protein FlaG D PAP_04470 hypothetical protein K07331 flaH; archaeal flagellar protein FlaH D PAP_04475 hypothetical protein K07332 flaI; archaeal flagellar protein FlaI D PAP_00410 type II/IV secretion system ATPase K07332 flaI; archaeal flagellar protein FlaI D PAP_04480 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ D PAP_00415 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ D PAP_04570 hypothetical protein K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:ppac04812] D PAP_08795 cell division protein K07767 KATNA1; katanin p60 ATPase-containing subunit A1 [EC:5.6.1.1] D PAP_01950 hypothetical protein K06990 MEMO1; MEMO1 family protein D PAP_05935 hypothetical protein K03531 ftsZ; cell division protein FtsZ D PAP_02230 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D PAP_00740 cell division protein FtsZ K22222 cetZ; tubulin-like protein CetZ D PAP_04655 ATP-binding protein K03609 minD; septum site-determining protein MinD D PAP_05815 CDP-4-dehydro-6-deoxy-D-gulose 4-reductase K03609 minD; septum site-determining protein MinD D PAP_03565 phosphodiesterase K03609 minD; septum site-determining protein MinD D PAP_05940 hypothetical protein K03496 parA; chromosome partitioning protein C 04147 Exosome [BR:ppac04147] D PAP_04410 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_01940 hypothetical protein K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D PAP_04615 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D PAP_08515 hypothetical protein K00873 PK; pyruvate kinase [EC:2.7.1.40] D PAP_01620 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D PAP_02755 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha D PAP_02745 fusA; elongation factor EF-2 K03234 EEF2; elongation factor 2 D PAP_03620 endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D PAP_00535 inosine 5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D PAP_00770 30S ribosomal protein S27 K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D PAP_04830 ATPase AAA K13525 VCP; transitional endoplasmic reticulum ATPase D PAP_03595 ATPase AAA K13525 VCP; transitional endoplasmic reticulum ATPase D PAP_04775 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D PAP_05360 S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D PAP_06620 hypothetical protein K00939 adk; adenylate kinase [EC:2.7.4.3] D PAP_04180 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PAP_01835 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D PAP_08750 cystathionine beta-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D PAP_04120 hypothetical protein K00849 galK; galactokinase [EC:2.7.1.6] D PAP_08525 hypothetical protein K00864 glpK; glycerol kinase [EC:2.7.1.30] D PAP_02600 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D PAP_01370 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D PAP_00470 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D PAP_09695 glutamate dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D PAP_09970 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D PAP_04825 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:ppac02048] D PAP_07945 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D PAP_07940 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D PAP_07955 RNA helicase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D PAP_07970 hypothetical protein K19088 cst1; CRISPR-associated protein Cst1 D PAP_07965 CRISPR-associated protein DevR K19075 cst2; CRISPR-associated protein Cst2 D PAP_07715 hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D PAP_07950 hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D PAP_07960 CRISPR-associated protein Cas5 K19090 cas5t; CRISPR-associated protein Cas5t D PAP_07975 hypothetical protein K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D PAP_08415 hypothetical protein K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D PAP_05225 restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D PAP_05210 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D PAP_05190 type I restriction endonuclease subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D PAP_05575 hypothetical protein K03973 pspC; phage shock protein C D PAP_05930 transcriptional regulator K07746 parD1_3_4; antitoxin ParD1/3/4 D PAP_05935 hypothetical protein K03531 ftsZ; cell division protein FtsZ D PAP_02230 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D PAP_02340 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D PAP_04620 hypothetical protein K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-] D PAP_08965 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:ppac01504] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ppac00537] D PAP_01620 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:ppac03100] D PAP_04360 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAP_08475 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAP_08025 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAP_09125 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D PAP_02275 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAP_04060 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAP_05250 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAP_05310 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAP_07080 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D PAP_02675 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D PAP_00050 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D PAP_06945 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D PAP_09360 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D PAP_00040 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D PAP_01365 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAP_02880 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D PAP_00115 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAP_05390 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAP_03830 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D PAP_05240 tRNA-His K14226 tRNA-His; tRNA His D PAP_01360 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D PAP_00495 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAP_01905 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAP_08450 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAP_05325 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAP_08375 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D PAP_00045 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PAP_05320 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D PAP_02670 tRNA-Met K14230 tRNA-Met; tRNA Met D PAP_03705 tRNA-Met K14230 tRNA-Met; tRNA Met D PAP_05335 tRNA-Met K14230 tRNA-Met; tRNA Met D PAP_05385 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D PAP_10090 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAP_01930 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAP_02685 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D PAP_01880 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAP_02765 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAP_06310 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAP_06950 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D PAP_02455 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAP_02680 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAP_02690 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D PAP_10140 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D PAP_10095 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D PAP_06200 tRNA-Val K14237 tRNA-Val; tRNA Val D PAP_09130 tRNA-Val K14237 tRNA-Val; tRNA Val D PAP_06635 tRNA-Val K14237 tRNA-Val; tRNA Val D PAP_08480 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAP_04355 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D PAP_04365 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAP_08470 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D PAP_00055 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D PAP_04110 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D PAP_04965 2-keto acid:ferredoxin oxidoreductase subunit alpha K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D PAP_05275 indolepyruvate oxidoreductase K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D PAP_05280 indolepyruvate oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D PAP_07660 indolepyruvate oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D PAP_07680 NADH oxidase K17870 nox1; NADH oxidase (H2O2-forming) [EC:1.6.3.3] D PAP_01275 CoA disulfide reductase K18367 CoADR; CoA-dependent NAD(P)H sulfur oxidoreductase [EC:1.8.1.18] D PAP_08890 alkyl hydroperoxide reductase K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D PAP_01150 hydrogenase K18016 mbhL; membrane-bound hydrogenase subunit alpha [EC:1.12.7.2] D PAP_01220 NADH dehydrogenase K18016 mbhL; membrane-bound hydrogenase subunit alpha [EC:1.12.7.2] D PAP_01215 hydrogenase K18017 mbhK; membrane-bound hydrogenase subunit beta [EC:1.12.7.2] D PAP_01145 hydrogenase K18017 mbhK; membrane-bound hydrogenase subunit beta [EC:1.12.7.2] D PAP_01210 mbh10 NADH dehydrogenase subunit K18023 mbhJ; membrane-bound hydrogenase subunit mbhJ [EC:1.12.7.2] D PAP_01140 mbh10 NADH dehydrogenase subunit K18023 mbhJ; membrane-bound hydrogenase subunit mbhJ [EC:1.12.7.2] D PAP_03335 hypothetical protein K05919 dfx; superoxide reductase [EC:1.15.1.2] D PAP_08895 ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D PAP_00195 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D PAP_08685 arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D PAP_00325 hypothetical protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5] D PAP_07070 hypothetical protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D PAP_06440 radical SAM protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D PAP_03485 hypothetical protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D PAP_08635 hypothetical protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D PAP_04560 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D PAP_06625 diphthine synthase K20215 dph5; diphthine synthase [EC:2.1.1.98] D PAP_08240 carbamoyl transferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D PAP_08195 Kojibiose phosphorylase K10231 kojP; kojibiose phosphorylase [EC:2.4.1.230] D PAP_05145 glycosyltransferase K21349 ggs; glucosylglycerate synthase [EC:2.4.1.268] D PAP_08185 hypothetical protein K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340] D PAP_05795 hypothetical protein K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D PAP_08250 deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D PAP_09495 hypothetical protein K07057 bpsA; N4-bis(aminopropyl)spermidine synthase [EC:2.5.1.128] D PAP_09270 RNA-binding protein K07557 tgtA2; archaeosine synthase alpha-subunit [EC:2.6.1.97 2.6.1.-] D PAP_05620 Fe-S oxidoreductase K06936 raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-] D PAP_01610 hypothetical protein K18678 VTE5; phytol kinase [EC:2.7.1.182] D PAP_01540 hypothetical protein K05715 2PGK; 2-phosphoglycerate kinase [EC:2.7.2.16] D PAP_06700 hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D PAP_07230 hypothetical protein K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D PAP_00260 hypothetical protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D PAP_04050 hypothetical protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D PAP_04195 deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D PAP_00235 hypothetical protein K07503 nucS; endonuclease [EC:3.1.-.-] D PAP_04135 diacetylchitobiose deacetylase K22408 dac; N,N'-diacetylchitobiose non-reducing end deacetylase [EC:3.5.1.136] D PAP_03080 endoribonuclease K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D PAP_09805 ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D PAP_00450 ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D PAP_07245 Sam Hydroxide Adenosyltransferase K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3] D PAP_00265 carbohydrate kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D PAP_03840 N-glycosylase K01741 E4.2.99.18; DNA-(apurinic or apyrimidinic site) lyase [EC:4.2.99.18] D PAP_08005 ribosomal subunit interface protein K18105 rtcA; RNA 3'-terminal phosphate cyclase (GTP) [EC:6.5.1.5] D PAP_07615 hypothetical protein K05716 CPGS; cyclic 2,3-diphosphoglycerate synthase [EC:6.5.1.9] D PAP_02190 ATP dependent DNA ligase K07468 K07468; DNA/RNA ligase [EC:6.5.1.-] D PAP_08780 ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D PAP_08830 zinc-transporting ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D PAP_08260 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D PAP_09480 ferredoxin K05337 fer; ferredoxin D PAP_08975 hypothetical protein K13819 K13819; NifU-like protein D PAP_02110 sodium:proton antiporter K14113 ehbD; energy-converting hydrogenase B subunit D D PAP_02370 hypothetical protein K14113 ehbD; energy-converting hydrogenase B subunit D D PAP_01110 membrane protein K14113 ehbD; energy-converting hydrogenase B subunit D D PAP_01180 membrane protein K14113 ehbD; energy-converting hydrogenase B subunit D D PAP_01190 hydrogenase K14118 ehbI; energy-converting hydrogenase B subunit I C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism D PAP_10000 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D PAP_08310 molybdopterin-guanine dinucleotide biosynthesis protein MobB K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D PAP_05295 transcription factor K03627 MBF1; putative transcription factor D PAP_06400 DNA-binding protein K03622 ssh10b; archaea-specific DNA-binding protein D PAP_02985 small nuclear ribonucleoprotein K04796 RUXX; small nuclear ribonucleoprotein D PAP_03535 transcriptional regulator K07743 K07743; transcriptional regulator C 99974 Translation D PAP_03515 DNA-binding protein K07572 K07572; putative nucleotide binding protein D PAP_08255 mRNA 3'-end processing factor K07577 K07577; putative mRNA 3-end processing factor D PAP_09290 DNA methylase K07579 K07579; putative methylase D PAP_00505 RNA-binding protein K07580 K07580; Zn-ribbon RNA-binding protein D PAP_02035 hypothetical protein K07581 K07581; RNA-binding protein D PAP_04725 hypothetical protein K07585 K07585; tRNA methyltransferase C 99975 Protein processing D PAP_06290 hydrogenase K04653 hypC; hydrogenase expression/formation protein HypC D PAP_06285 hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D PAP_04030 hydrogenase expression protein K04655 hypE; hydrogenase expression/formation protein HypE D PAP_02660 hydrogenase assembly protein HupF K04655 hypE; hydrogenase expression/formation protein HypE D PAP_02960 hydrogenase K04655 hypE; hydrogenase expression/formation protein HypE D PAP_01595 hydrogenase expression protein K04656 hypF; hydrogenase maturation protein HypF D PAP_07495 stress-inducible protein, OsmC/Ohr family K07397 yhfA; putative redox protein D PAP_04645 nodulation protein NfeD K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D PAP_02295 multidrug transporter K07463 K07463; archaea-specific RecJ-like exonuclease D PAP_07090 TATA binding protein (TBP)-interacting protein (TIP49) K07472 TIP49; TBP-interacting protein D PAP_06995 hypothetical protein K07477 K07477; translin D PAP_03710 hypothetical protein K07500 K07500; DNA endonuclease C 99979 Viral proteins C 99998 Others D PAP_06965 hypothetical protein K07504 K07504; predicted type IV restriction endonuclease B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D PAP_07815 hypothetical protein K03306 TC.PIT; inorganic phosphate transporter, PiT family D PAP_04295 Na-dependent transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D PAP_10245 phosphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family D PAP_05545 proline permease K03307 TC.SSS; solute:Na+ symporter, SSS family D PAP_06890 proline permease K03307 TC.SSS; solute:Na+ symporter, SSS family D PAP_06410 transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D PAP_09570 alanine glycine permease K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family C 99978 Cell growth D PAP_05470 allophanate hydrolase K06351 kipI; inhibitor of KinA D PAP_07035 hypothetical protein K06384 spoIIM; stage II sporulation protein M C 99993 Cell motility D PAP_04490 hypothetical protein K09156 cheF; taxis protein CheF C 99995 Signaling proteins D PAP_03765 carbon starvation protein CstA K06200 cstA; carbon starvation protein D PAP_09245 hypothetical protein K07176 K07176; putative serine/threonine protein kinase D PAP_04720 DNA-binding protein K06875 PDCD5; programmed cell death protein 5 C 99992 Structural proteins C 99994 Others D PAP_01600 divalent ion tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein B B 09194 Poorly characterized C 99996 General function prediction only D PAP_02485 hypothetical protein K04477 ycdX; putative hydrolase D PAP_05820 ATPase K06865 K06865; ATPase D PAP_04225 hypothetical protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein D PAP_04595 2-haloalkanoic acid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily D PAP_05410 hypothetical protein K07025 K07025; putative hydrolase of the HAD superfamily D PAP_05745 hypothetical protein K07025 K07025; putative hydrolase of the HAD superfamily D PAP_03130 haloacid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily D PAP_09210 hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D PAP_02350 hypothetical protein K09014 sufB; Fe-S cluster assembly protein SufB D PAP_04380 hypothetical protein K07038 K07038; inner membrane protein D PAP_08245 metal-dependent hydrolase K07049 K07049; TatD-related deoxyribonuclease D PAP_08060 hypothetical protein K07143 K07143; UPF0148 protein D PAP_05075 hypothetical protein K08971 K08971; putative membrane protein D PAP_06245 hypothetical protein K08975 K08975; putative membrane protein D PAP_08765 membrane protein K08982 K08982; putative membrane protein C 99997 Function unknown D PAP_00245 3-isopropylmalate dehydratase K06869 K06869; uncharacterized protein D PAP_09730 hypothetical protein K06870 K06870; uncharacterized protein D PAP_07770 nucleotidyltransferase K06885 K06885; uncharacterized protein D PAP_06005 phosphohydrolase K06885 K06885; uncharacterized protein D PAP_00830 hypothetical protein K06885 K06885; uncharacterized protein D PAP_02590 alpha/beta hydrolase K06889 K06889; uncharacterized protein D PAP_01995 ATPase K06921 K06921; uncharacterized protein D PAP_09775 hypothetical protein K06921 K06921; uncharacterized protein D PAP_08885 CoA-binding protein K06929 K06929; uncharacterized protein D PAP_06445 hypothetical protein K06933 K06933; uncharacterized protein D PAP_06475 DNA-binding protein K06934 K06934; uncharacterized protein D PAP_07015 molybdenum cofactor biosynthesis protein MoaA K06935 K06935; uncharacterized protein D PAP_04105 hypothetical protein K06940 K06940; uncharacterized protein D PAP_09605 hypothetical protein K06940 K06940; uncharacterized protein D PAP_08355 phosphohydrolase K06950 K06950; uncharacterized protein D PAP_06805 hypothetical protein K06953 K06953; uncharacterized protein D PAP_10050 hypothetical protein K06953 K06953; uncharacterized protein D PAP_01050 hypothetical protein K06971 K06971; uncharacterized protein D PAP_09230 hypothetical protein K06983 K06983; uncharacterized protein D PAP_01355 hypothetical protein K06986 K06986; uncharacterized protein D PAP_07875 MFS transporter K07003 K07003; uncharacterized protein D PAP_09470 hypothetical protein K07003 K07003; uncharacterized protein D PAP_09455 hypothetical protein K07022 K07022; uncharacterized protein D PAP_07900 hypothetical protein K07041 K07041; uncharacterized protein D PAP_04770 AcaC K07068 K07068; uncharacterized protein D PAP_07675 hypothetical protein K07069 K07069; uncharacterized protein D PAP_08120 nucleotidyltransferase K07073 K07073; uncharacterized protein D PAP_02220 C4-dicarboxylate ABC transporter substrate-binding protein K07080 K07080; uncharacterized protein D PAP_02510 hypothetical protein K07087 K07087; uncharacterized protein D PAP_08035 permease K07090 K07090; uncharacterized protein D PAP_05395 hypothetical protein K07090 K07090; uncharacterized protein D PAP_09905 hypothetical protein K07090 K07090; uncharacterized protein D PAP_08015 phosphodiesterase K07095 K07095; uncharacterized protein D PAP_06905 hypothetical protein K07095 K07095; uncharacterized protein D PAP_07740 hypothetical protein K07096 K07096; uncharacterized protein D PAP_06710 xanthine phosphoribosyltransferase K07101 K07101; uncharacterized protein D PAP_09520 xanthine phosphoribosyltransferase K07101 K07101; uncharacterized protein D PAP_07805 regulator K07103 K07103; uncharacterized protein D PAP_01585 hypothetical protein K07103 K07103; uncharacterized protein D PAP_08960 transcriptional regulator K07108 K07108; uncharacterized protein D PAP_09050 ABC transporter ATP-binding protein K07128 K07128; uncharacterized protein D PAP_06540 Fe-S protein, radical SAM family K07129 K07129; uncharacterized protein D PAP_04870 hypothetical protein K07133 K07133; uncharacterized protein D PAP_09760 hypothetical protein K07133 K07133; uncharacterized protein D PAP_09490 hypothetical protein K07134 K07134; uncharacterized protein D PAP_02180 tRNA-binding protein K07135 K07135; uncharacterized protein D PAP_09140 FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein D PAP_10115 Nucleotide binding protein, containing PIN domain K07158 K07158; uncharacterized protein D PAP_03450 3-isopropylmalate dehydratase K07159 K07159; uncharacterized protein D PAP_06660 hypothetical protein K09003 K09003; uncharacterized protein D PAP_02895 hypothetical protein K09005 K09005; uncharacterized protein D PAP_01605 hypothetical protein K09120 K09120; uncharacterized protein D PAP_06360 hypothetical protein K09122 K09122; uncharacterized protein D PAP_10160 adenosine monophosphate-protein transferase K09129 K09129; uncharacterized protein D PAP_02865 hypothetical protein K09131 K09131; uncharacterized protein D PAP_00945 hypothetical protein K09133 K09133; uncharacterized protein D PAP_00240 hypothetical protein K09135 K09135; uncharacterized protein D PAP_02910 hypothetical protein K09137 K09137; uncharacterized protein D PAP_08095 hypothetical protein K09138 K09138; uncharacterized protein D PAP_08455 hypothetical protein K09139 K09139; uncharacterized protein D PAP_06535 hypothetical protein K09141 K09141; uncharacterized protein D PAP_02870 hypothetical protein K09145 K09145; uncharacterized protein D PAP_01285 hypothetical protein K09148 K09148; uncharacterized protein D PAP_09300 hypothetical protein K09149 K09149; uncharacterized protein D PAP_09135 hypothetical protein K09150 K09150; uncharacterized protein D PAP_05505 hypothetical protein K09154 K09154; uncharacterized protein D PAP_08945 diguanylate cyclase K09155 K09155; uncharacterized protein D PAP_09315 metal-dependent phosphohydrolase K09163 K09163; uncharacterized protein D PAP_05025 hypothetical protein K09713 K09713; uncharacterized protein D PAP_03010 hypothetical protein K09715 K09715; uncharacterized protein D PAP_02900 hypothetical protein K09719 K09719; uncharacterized protein D PAP_05845 hypothetical protein K09721 K09721; uncharacterized protein D PAP_07120 hypothetical protein K09724 K09724; uncharacterized protein D PAP_09165 hypothetical protein K09725 K09725; uncharacterized protein D PAP_07030 hypothetical protein K09726 K09726; uncharacterized protein D PAP_05290 hypothetical protein K09727 K09727; uncharacterized protein D PAP_07840 hypothetical protein K09728 K09728; uncharacterized protein D PAP_00965 hypothetical protein K09729 K09729; uncharacterized protein D PAP_05355 hypothetical protein K09730 K09730; uncharacterized protein D PAP_07845 hypothetical protein K09731 K09731; uncharacterized protein D PAP_00285 hypothetical protein K09732 K09732; uncharacterized protein D PAP_00120 hypothetical protein K09736 K09736; uncharacterized protein D PAP_09440 hypothetical protein K09737 K09737; uncharacterized protein D PAP_06575 hypothetical protein K09738 K09738; uncharacterized protein D PAP_09065 hypothetical protein K09742 K09742; uncharacterized protein D PAP_00075 replication factor A complex, RPA32 subunit K09746 K09746; uncharacterized protein D PAP_09995 hypothetical protein K09791 K09791; uncharacterized protein D PAP_10240 hypothetical protein K07220 K07220; uncharacterized protein D PAP_00465 hypothetical protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 17, 2024