+E Transcription factors KO
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Transcription Factors - Pectobacterium parmentieri RNS08.42.1A
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D A8F97_05510 DNA-binding transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D A8F97_06970 DNA-binding transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D A8F97_15880 transcriptional regulator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D A8F97_15885 AraC family transcriptional regulator K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D A8F97_22160 transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D A8F97_03990 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D A8F97_13800 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D A8F97_01780 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D A8F97_20410 transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D A8F97_19665 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D A8F97_22240 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D A8F97_17455 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D A8F97_22110 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D A8F97_07045 transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D A8F97_09815 cbl; transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D A8F97_12385 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D A8F97_02825 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D A8F97_22470 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D A8F97_14795 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D A8F97_09880 cell density-dependent motility repressor K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D A8F97_17010 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D A8F97_20360 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D A8F97_09095 DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D A8F97_20875 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D A8F97_06710 transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D A8F97_00040 DeoR family transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
C LacI family
D A8F97_09930 LacI family transcriptional regulator K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D A8F97_12250 transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A8F97_14700 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A8F97_14050 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A8F97_18820 transcriptional regulator RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A8F97_19290 XylR family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D A8F97_17505 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D A8F97_22550 DNA-binding transcriptional regulator FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D A8F97_16480 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D A8F97_15115 trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D A8F97_06230 transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D A8F97_18330 transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D A8F97_05330 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D A8F97_04780 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D A8F97_01715 GntR family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D A8F97_18645 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D A8F97_15085 GntR family transcriptional regulator K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
D A8F97_07410 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D A8F97_22720 transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D A8F97_02040 transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D A8F97_15240 transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D A8F97_18255 transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D A8F97_05915 decarboxylase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D A8F97_00330 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D A8F97_21395 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D A8F97_13735 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
D A8F97_18035 GntR family transcriptional regulator K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism
C TetR/AcrR family
D A8F97_02450 DNA-binding transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D A8F97_19475 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D A8F97_12955 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D A8F97_08405 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D A8F97_17445 DNA-binding transcriptional regulator FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D A8F97_06755 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D A8F97_18755 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D A8F97_08915 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D A8F97_02380 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D A8F97_09645 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D A8F97_19310 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
C MarR family
D A8F97_05355 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D A8F97_01200 transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D A8F97_12230 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D A8F97_02560 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D A8F97_03055 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D A8F97_15290 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D A8F97_21740 transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D A8F97_07725 DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D A8F97_00155 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D A8F97_22085 transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D A8F97_21330 transcriptional regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D A8F97_06645 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D A8F97_04740 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D A8F97_12640 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D A8F97_00630 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D A8F97_22785 transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D A8F97_18500 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D A8F97_08290 transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D A8F97_17395 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D A8F97_17155 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D A8F97_22145 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D A8F97_10660 transcriptional regulator K07724 ner; Ner family transcriptional regulator
D A8F97_15015 DNA-binding protein K07724 ner; Ner family transcriptional regulator
D A8F97_22480 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D A8F97_15650 trifunctional nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase/transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D A8F97_18385 XRE family transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D A8F97_16390 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D A8F97_05185 AAA family ATPase K11908 vasH; sigma-54 dependent transcriptional regulator
D A8F97_13540 AAA family ATPase K11908 vasH; sigma-54 dependent transcriptional regulator
D A8F97_13825 nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D A8F97_12985 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D A8F97_00540 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D A8F97_03365 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D A8F97_17125 transporter K02019 modE; molybdate transport system regulatory protein
D A8F97_21310 transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D A8F97_17475 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D A8F97_20435 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D A8F97_14205 CopG family transcriptional regulator K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
D A8F97_04915 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D A8F97_05250 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D A8F97_14045 antitermination protein BlgG K03488 licT; beta-glucoside operon transcriptional antiterminator
D A8F97_15165 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D A8F97_02320 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D A8F97_20255 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D A8F97_15025 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D A8F97_03030 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D A8F97_06905 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D A8F97_19230 mtlR; mannitol repressor protein K02562 mtlR; mannitol operon repressor
D A8F97_05660 DNA-binding transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D A8F97_02750 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D A8F97_05620 phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D A8F97_05635 DNA-binding transcriptional activator PspC K03973 pspC; phage shock protein C
D A8F97_16980 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D A8F97_10625 DNA-binding protein K07733 alpA; prophage regulatory protein
D A8F97_10675 DNA-binding protein K07733 alpA; prophage regulatory protein
D A8F97_10125 DNA-binding protein K07733 alpA; prophage regulatory protein
D A8F97_10960 DNA-binding protein K07733 alpA; prophage regulatory protein
D A8F97_11605 dipicolinate synthase K07733 alpA; prophage regulatory protein
D A8F97_11665 hypothetical protein K07733 alpA; prophage regulatory protein
D A8F97_14585 dipicolinate synthase K07733 alpA; prophage regulatory protein
D A8F97_16175 transcriptional regulator K07733 alpA; prophage regulatory protein
D A8F97_11915 Rha family transcriptional regulator K07733 alpA; prophage regulatory protein
D A8F97_21960 hypothetical protein K07735 algH; putative transcriptional regulator
D A8F97_13075 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D A8F97_02220 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D A8F97_01480 sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl
D A8F97_15950 transcriptional regulator K14414 rtcR; transcriptional regulatory protein RtcR
D A8F97_22560 cell division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0