+E Transcription factors KO #

  Transcription Factors - Pectobacterium parmentieri RNS08.42.1A

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D A8F97_05510 DNA-binding transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D A8F97_06970 DNA-binding transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D A8F97_15880 transcriptional regulator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D A8F97_15885 AraC family transcriptional regulator K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D A8F97_22160 transcriptional regulator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D A8F97_03990 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D A8F97_13800 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D A8F97_01780 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D A8F97_20410 transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D A8F97_19665 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D A8F97_22240 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D A8F97_17455 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D A8F97_22110 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D A8F97_07045 transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D A8F97_09815 cbl; transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D A8F97_12385 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D A8F97_02825 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D A8F97_22470 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D A8F97_14795 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D A8F97_09880 cell density-dependent motility repressor K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D A8F97_17010 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D A8F97_20360 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D A8F97_09095 DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D A8F97_20875 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D A8F97_06710 transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D A8F97_00040 DeoR family transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator C LacI family D A8F97_09930 LacI family transcriptional regulator K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D A8F97_12250 transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D A8F97_14700 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D A8F97_14050 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D A8F97_18820 transcriptional regulator RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D A8F97_19290 XylR family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D A8F97_17505 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D A8F97_22550 DNA-binding transcriptional regulator FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D A8F97_16480 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D A8F97_15115 trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D A8F97_06230 transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor D A8F97_18330 transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor D A8F97_05330 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D A8F97_04780 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D A8F97_01715 GntR family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D A8F97_18645 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D A8F97_15085 GntR family transcriptional regulator K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D A8F97_07410 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D A8F97_22720 transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D A8F97_02040 transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D A8F97_15240 transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D A8F97_18255 transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor D A8F97_05915 decarboxylase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D A8F97_00330 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D A8F97_21395 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D A8F97_13735 GntR family transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor D A8F97_18035 GntR family transcriptional regulator K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism C TetR/AcrR family D A8F97_02450 DNA-binding transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D A8F97_19475 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D A8F97_12955 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D A8F97_08405 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D A8F97_17445 DNA-binding transcriptional regulator FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D A8F97_06755 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D A8F97_18755 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D A8F97_08915 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D A8F97_02380 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D A8F97_09645 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D A8F97_19310 LuxR family transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR C MarR family D A8F97_05355 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D A8F97_01200 transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D A8F97_12230 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D A8F97_02560 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D A8F97_03055 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D A8F97_15290 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D A8F97_21740 transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D A8F97_07725 DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D A8F97_00155 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D A8F97_22085 transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D A8F97_21330 transcriptional regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D A8F97_06645 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D A8F97_04740 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D A8F97_12640 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D A8F97_00630 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D A8F97_22785 transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D A8F97_18500 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D A8F97_08290 transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D A8F97_17395 biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D A8F97_17155 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D A8F97_22145 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D A8F97_10660 transcriptional regulator K07724 ner; Ner family transcriptional regulator D A8F97_15015 DNA-binding protein K07724 ner; Ner family transcriptional regulator D A8F97_22480 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator D A8F97_15650 trifunctional nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase/transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D A8F97_18385 XRE family transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D A8F97_16390 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D A8F97_05185 AAA family ATPase K11908 vasH; sigma-54 dependent transcriptional regulator D A8F97_13540 AAA family ATPase K11908 vasH; sigma-54 dependent transcriptional regulator D A8F97_13825 nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D A8F97_12985 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator D A8F97_00540 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator D A8F97_03365 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein D A8F97_17125 transporter K02019 modE; molybdate transport system regulatory protein D A8F97_21310 transcriptional regulator K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D A8F97_17475 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D A8F97_20435 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D A8F97_14205 CopG family transcriptional regulator K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family D A8F97_04915 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator D A8F97_05250 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator D A8F97_14045 antitermination protein BlgG K03488 licT; beta-glucoside operon transcriptional antiterminator D A8F97_15165 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator C Others D A8F97_02320 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D A8F97_20255 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH D A8F97_15025 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D A8F97_03030 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor D A8F97_06905 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene D A8F97_19230 mtlR; mannitol repressor protein K02562 mtlR; mannitol operon repressor D A8F97_05660 DNA-binding transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D A8F97_02750 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D A8F97_05620 phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator D A8F97_05635 DNA-binding transcriptional activator PspC K03973 pspC; phage shock protein C D A8F97_16980 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D A8F97_10625 DNA-binding protein K07733 alpA; prophage regulatory protein D A8F97_10675 DNA-binding protein K07733 alpA; prophage regulatory protein D A8F97_10125 DNA-binding protein K07733 alpA; prophage regulatory protein D A8F97_10960 DNA-binding protein K07733 alpA; prophage regulatory protein D A8F97_11605 dipicolinate synthase K07733 alpA; prophage regulatory protein D A8F97_11665 hypothetical protein K07733 alpA; prophage regulatory protein D A8F97_14585 dipicolinate synthase K07733 alpA; prophage regulatory protein D A8F97_16175 transcriptional regulator K07733 alpA; prophage regulatory protein D A8F97_11915 Rha family transcriptional regulator K07733 alpA; prophage regulatory protein D A8F97_21960 hypothetical protein K07735 algH; putative transcriptional regulator D A8F97_13075 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D A8F97_02220 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D A8F97_01480 sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl D A8F97_15950 transcriptional regulator K14414 rtcR; transcriptional regulatory protein RtcR D A8F97_22560 cell division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0