+D GENES KO
#
KEGG Orthology (KO) - Pseudomonas putida BIRD-1
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ppb00010]
D PPUBIRD1_1061 glk; Glk K00845 glk; glucokinase [EC:2.7.1.2]
D PPUBIRD1_4402 pgi; Pgi K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PPUBIRD1_4829 fbp; Fbp K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PPUBIRD1_4744 fda; Fda K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PPUBIRD1_4417 tpiA; TpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PPUBIRD1_3505 gap_2; Gap_2 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PPUBIRD1_1059 gap; Gap K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PPUBIRD1_4747 pgk; Pgk K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PPUBIRD1_4844 pgm; Pgm K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D PPUBIRD1_4003 eno; Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PPUBIRD1_1555 pykF; PykF K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PPUBIRD1_4200 pykA; PykA K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PPUBIRD1_3571 ppsA; PpsA K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PPUBIRD1_0372 aceE; AceE K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PPUBIRD1_0603 acoC; AcoC K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PPUBIRD1_0371 aceF; AceF K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_3999 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PPUBIRD1_1896 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PPUBIRD1_3256 Alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D PPUBIRD1_2997 Pyrrolo-quinoline quinone K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
D PPUBIRD1_3002 qedH; QedH K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
D PPUBIRD1_2165 Gluconate 2-dehydrogenase acceptor subunit K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5]
D PPUBIRD1_2399 Gluconate 2-dehydrogenase acceptor subunit K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PPUBIRD1_2995 Aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D PPUBIRD1_0594 Aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D PPUBIRD1_3438 fadD; FadD K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_4403 Acetyl-coenzyme A synthetase 2 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_1414 Acetyl-coenzyme A synthetase 1 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_2038 Acyl-CoA synthetase, putative K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D PPUBIRD1_2443 pauA; PauA K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D PPUBIRD1_1210 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D PPUBIRD1_2214 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PPUBIRD1_5082 Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PPUBIRD1_5124 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D PPUBIRD1_2348 Glyceraldehyde-3-phosphate dehydrogenase, putative K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D PPUBIRD1_0280 pckA; PckA K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:ppb00020]
D PPUBIRD1_1658 gltA; GltA K01647 CS; citrate synthase [EC:2.3.3.1]
D PPUBIRD1_3539 acnA; AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D PPUBIRD1_3347 Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PPUBIRD1_1802 Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PPUBIRD1_1803 Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PPUBIRD1_1663 sucA; SucA K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D PPUBIRD1_1664 Dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1667 sucD; SucD K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PPUBIRD1_1666 sucC; SucC K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PPUBIRD1_0183 Acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PPUBIRD1_1661 sdhA; SdhA K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PPUBIRD1_1662 sdhB; SdhB K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PPUBIRD1_1659 sdhC; SdhC K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PPUBIRD1_1660 sdhD; SdhD K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PPUBIRD1_0948 Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D PPUBIRD1_3858 fumC_2; FumC_2 K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PPUBIRD1_0997 fumC; FumC K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PPUBIRD1_0698 Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PPUBIRD1_0797 mqo1; Mqo1 K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PPUBIRD1_1288 mqo2; Mqo2 K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PPUBIRD1_2810 mqo3; Mqo3 K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PPUBIRD1_0017 accC; AccC K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D PPUBIRD1_0016 oadA; OadA K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D PPUBIRD1_0280 pckA; PckA K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D PPUBIRD1_0372 aceE; AceE K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PPUBIRD1_0603 acoC; AcoC K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PPUBIRD1_0371 aceF; AceF K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:ppb00030]
D PPUBIRD1_4402 pgi; Pgi K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PPUBIRD1_0020 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PPUBIRD1_1778 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PPUBIRD1_1072 zwf; Zwf K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PPUBIRD1_1073 pgl; Pgl K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D PPUBIRD1_1777 gnd; Gnd K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PPUBIRD1_0453 rpe; Rpe K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PPUBIRD1_4749 tktA; TktA K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PPUBIRD1_0037 Transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PPUBIRD1_0038 Transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PPUBIRD1_3486 Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PPUBIRD1_4941 rpiA; RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D PPUBIRD1_3220 Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D PPUBIRD1_2214 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PPUBIRD1_5082 Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PPUBIRD1_1434 gmk; Gmk K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D PPUBIRD1_0768 prsA; PrsA K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PPUBIRD1_2930 Ribose-phosphate pyrophosphokinase family protein K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PPUBIRD1_1060 edd; Edd K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D PPUBIRD1_1074 Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D PPUBIRD1_2348 Glyceraldehyde-3-phosphate dehydrogenase, putative K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D PPUBIRD1_3956 Glucose-methanol-choline oxidoreductase K19813 gdh; glucose dehydrogenase [EC:1.1.5.9]
D PPUBIRD1_4115 Quinoprotein glucose dehydrogenase A K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D PPUBIRD1_2398 Gluconate 2-dehydrogenase flavoprotein K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3]
D PPUBIRD1_2397 Gluconate 2-dehydrogenase acceptor subunit K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
D PPUBIRD1_4298 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PPUBIRD1_2402 Ribokinase-like domain-containing protein K11441 kguK; dehydrogluconokinase [EC:2.7.1.13]
D PPUBIRD1_2404 Gluconate 2-dehydrogenase K00032 E1.1.1.43; phosphogluconate 2-dehydrogenase [EC:1.1.1.43]
D PPUBIRD1_2373 Carbohydrate kinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D PPUBIRD1_1556 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PPUBIRD1_0830 trxB; TrxB K22345 E4.3.1.9; glucosaminate ammonia-lyase [EC:4.3.1.9]
D PPUBIRD1_4744 fda; Fda K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PPUBIRD1_4829 fbp; Fbp K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:ppb00040]
D PPUBIRD1_2809 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PPUBIRD1_1959 galU; GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PPUBIRD1_0453 rpe; Rpe K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PPUBIRD1_2190 Aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D PPUBIRD1_1292 Aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D PPUBIRD1_3095 Aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D PPUBIRD1_2979 Aldehyde dehydrogenase family protein K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-]
D PPUBIRD1_3614 Hypothetical protein, conserved K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:ppb00051]
D PPUBIRD1_2475 Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D PPUBIRD1_4284 algA; AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PPUBIRD1_5082 Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PPUBIRD1_3614 Hypothetical protein, conserved K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D PPUBIRD1_2903 Mandelate racemase/muconate lactonizing protein K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D PPUBIRD1_4829 fbp; Fbp K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PPUBIRD1_0839 fruK; FruK K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D PPUBIRD1_4273 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132]
D PPUBIRD1_4274 Glycosyltransferase alg8 K19290 alg8; mannuronan synthase [EC:2.4.1.33]
D PPUBIRD1_4275 Alginate biosynthesis protein alg44 K19291 alg44; mannuronan synthase [EC:2.4.1.33]
D PPUBIRD1_4278 Poly(beta-D-mannuronate) C5 epimerase K01795 algG; mannuronan 5-epimerase [EC:5.1.3.37]
D PPUBIRD1_4280 algL; AlgL K01729 algL; poly(beta-D-mannuronate) lyase [EC:4.2.2.3]
D PPUBIRD1_4744 fda; Fda K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PPUBIRD1_4417 tpiA; TpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PPUBIRD1_0840 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
C 00052 Galactose metabolism [PATH:ppb00052]
D PPUBIRD1_1210 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D PPUBIRD1_0542 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PPUBIRD1_2604 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PPUBIRD1_1959 galU; GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PPUBIRD1_2214 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PPUBIRD1_5082 Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PPUBIRD1_1061 glk; Glk K00845 glk; glucokinase [EC:2.7.1.2]
D PPUBIRD1_2469 Sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
C 00053 Ascorbate and aldarate metabolism [PATH:ppb00053]
D PPUBIRD1_2809 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PPUBIRD1_4510 Glucarate dehydratase K01706 gudD; glucarate dehydratase [EC:4.2.1.40]
D PPUBIRD1_2190 Aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D PPUBIRD1_1292 Aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D PPUBIRD1_3095 Aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D PPUBIRD1_2193 5-dehydro-4-deoxyglucarate dehydratase K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41]
D PPUBIRD1_2191 Probable D-galactarate dehydratase K01708 garD; galactarate dehydratase [EC:4.2.1.42]
D PPUBIRD1_1845 NAD-dependent epimerase/dehydratase K18981 udh; uronate dehydrogenase [EC:1.1.1.203]
D PPUBIRD1_1216 NAD-dependent epimerase/dehydratase K18981 udh; uronate dehydrogenase [EC:1.1.1.203]
C 00500 Starch and sucrose metabolism [PATH:ppb00500]
D PPUBIRD1_2469 Sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D PPUBIRD1_1959 galU; GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PPUBIRD1_4156 Periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PPUBIRD1_3056 bcsA_2; BcsA_2 K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D PPUBIRD1_1471 Glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D PPUBIRD1_1775 glgA; GlgA K00703 glgA; starch synthase [EC:2.4.1.21]
D PPUBIRD1_1766 glgB; GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PPUBIRD1_4830 glgP; GlgP K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D PPUBIRD1_1765 Trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D PPUBIRD1_1773 malQ; MalQ K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D PPUBIRD1_1763 Alpha amylase, catalytic region K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D PPUBIRD1_1769 glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D PPUBIRD1_1772 Malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
D PPUBIRD1_1774 Malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D PPUBIRD1_2214 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PPUBIRD1_5082 Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PPUBIRD1_1061 glk; Glk K00845 glk; glucokinase [EC:2.7.1.2]
D PPUBIRD1_4402 pgi; Pgi K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PPUBIRD1_2475 Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ppb00520]
D PPUBIRD1_3509 nagZ; NagZ K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D PPUBIRD1_2475 Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D PPUBIRD1_0055 glmS; GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PPUBIRD1_4418 glmM; GlmM K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D PPUBIRD1_0057 glmU; GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PPUBIRD1_0471 Anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D PPUBIRD1_3849 Phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D PPUBIRD1_0443 Aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D PPUBIRD1_0444 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D PPUBIRD1_1017 murA; MurA K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PPUBIRD1_3720 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PPUBIRD1_3800 wecB; WecB K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D PPUBIRD1_3833 Polysaccharide biosynthesis protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D PPUBIRD1_1061 glk; Glk K00845 glk; glucokinase [EC:2.7.1.2]
D PPUBIRD1_2214 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PPUBIRD1_5082 Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PPUBIRD1_1959 galU; GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PPUBIRD1_2809 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PPUBIRD1_0542 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PPUBIRD1_2604 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PPUBIRD1_4402 pgi; Pgi K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PPUBIRD1_4284 algA; AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PPUBIRD1_4273 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132]
D PPUBIRD1_1471 Glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D PPUBIRD1_1472 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D PPUBIRD1_1473 Lipopolysaccharide biosynthesis protein rfbH K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D PPUBIRD1_5008 CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
C 00620 Pyruvate metabolism [PATH:ppb00620]
D PPUBIRD1_3438 fadD; FadD K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_4403 Acetyl-coenzyme A synthetase 2 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_1414 Acetyl-coenzyme A synthetase 1 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_0372 aceE; AceE K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PPUBIRD1_0603 acoC; AcoC K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PPUBIRD1_0371 aceF; AceF K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1896 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PPUBIRD1_3999 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PPUBIRD1_3256 Alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D PPUBIRD1_2997 Pyrrolo-quinoline quinone K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
D PPUBIRD1_3002 qedH; QedH K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
D PPUBIRD1_2165 Gluconate 2-dehydrogenase acceptor subunit K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5]
D PPUBIRD1_2399 Gluconate 2-dehydrogenase acceptor subunit K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5]
D PPUBIRD1_0820 pta; Pta K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D PPUBIRD1_1555 pykF; PykF K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PPUBIRD1_4200 pykA; PykA K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PPUBIRD1_4008 accA; AccA K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PPUBIRD1_0609 Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PPUBIRD1_0608 accC_2; AccC_2 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PPUBIRD1_3674 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PPUBIRD1_2995 Aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D PPUBIRD1_0594 Aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D PPUBIRD1_0183 Acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PPUBIRD1_2038 Acyl-CoA synthetase, putative K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D PPUBIRD1_2443 pauA; PauA K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D PPUBIRD1_4439 lldD; LldD K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D PPUBIRD1_3967 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D PPUBIRD1_4440 D-lactate dehydrogenase (cytochrome) K18930 dld; D-lactate dehydrogenase
D PPUBIRD1_1996 Lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D PPUBIRD1_1705 gloB; GloB K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D PPUBIRD1_0818 Beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D PPUBIRD1_4298 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PPUBIRD1_4874 maeB; MaeB K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D PPUBIRD1_4171 Oxaloacetate decarboxylase K01003 bcpA; oxaloacetate decarboxylase [EC:4.1.1.112]
D PPUBIRD1_0017 accC; AccC K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D PPUBIRD1_0016 oadA; OadA K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D PPUBIRD1_0698 Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PPUBIRD1_0797 mqo1; Mqo1 K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PPUBIRD1_1288 mqo2; Mqo2 K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PPUBIRD1_2810 mqo3; Mqo3 K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PPUBIRD1_0948 Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D PPUBIRD1_3858 fumC_2; FumC_2 K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PPUBIRD1_0997 fumC; FumC K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PPUBIRD1_4054 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D PPUBIRD1_0280 pckA; PckA K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D PPUBIRD1_3571 ppsA; PpsA K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PPUBIRD1_0392 glcB; GlcB K01638 aceB; malate synthase [EC:2.3.3.9]
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_1075 leuA; LeuA K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ppb00630]
D PPUBIRD1_1734 Isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D PPUBIRD1_3438 fadD; FadD K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_4403 Acetyl-coenzyme A synthetase 2 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_1414 Acetyl-coenzyme A synthetase 1 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_0392 glcB; GlcB K01638 aceB; malate synthase [EC:2.3.3.9]
D PPUBIRD1_0698 Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PPUBIRD1_1658 gltA; GltA K01647 CS; citrate synthase [EC:2.3.3.1]
D PPUBIRD1_3539 acnA; AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D PPUBIRD1_3347 Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_1345 phaJ1; PhaJ1 K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D PPUBIRD1_2017 Glycolate oxidase subunit glcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D PPUBIRD1_2016 glcE; GlcE K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D PPUBIRD1_2015 glcF; GlcF K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D PPUBIRD1_0518 katA; KatA K03781 katE; catalase [EC:1.11.1.6]
D PPUBIRD1_0143 katE; KatE K03781 katE; catalase [EC:1.11.1.6]
D PPUBIRD1_2848 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6]
D PPUBIRD1_4298 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PPUBIRD1_0809 hprA; HprA K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D PPUBIRD1_3716 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D PPUBIRD1_0122 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D PPUBIRD1_0454 Phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D PPUBIRD1_1443 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4978 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4979 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_5092 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_2584 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_3473 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_1351 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4835 glnA; GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_0711 glyA_2; GlyA_2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PPUBIRD1_0353 glyA; GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PPUBIRD1_4987 gcvP_2; GcvP_2 K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PPUBIRD1_1038 gcvP; GcvP K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PPUBIRD1_4989 gcvT_2; GcvT_2 K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PPUBIRD1_1036 gcvT; GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_4988 Glycine cleavage system H protein 2 K02437 gcvH; glycine cleavage system H protein
D PPUBIRD1_1039 Glycine cleavage system H protein 1 K02437 gcvH; glycine cleavage system H protein
D PPUBIRD1_1559 gcl; Gcl K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47]
D PPUBIRD1_1558 Hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D PPUBIRD1_1557 glxR; GlxR K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D PPUBIRD1_2558 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PPUBIRD1_1556 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PPUBIRD1_1074 Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D PPUBIRD1_3465 Formate dehydrogenase, delta subunit, putative K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9]
D PPUBIRD1_0527 Molybdopterin oxidoreductase Fe4S4 region K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PPUBIRD1_0528 Formate dehydrogenase-O major subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PPUBIRD1_3466 Formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PPUBIRD1_0529 Formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D PPUBIRD1_3467 NADH dehydrogenase (quinone) K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D PPUBIRD1_0530 Formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D PPUBIRD1_3468 Formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D PPUBIRD1_4195 purU_2; PurU_2 K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D PPUBIRD1_0358 purU; PurU K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D PPUBIRD1_4817 hutG; HutG K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:ppb00640]
D PPUBIRD1_3438 fadD; FadD K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_4403 Acetyl-coenzyme A synthetase 2 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_1414 Acetyl-coenzyme A synthetase 1 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_3336 Hypothetical protein, conserved K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D PPUBIRD1_2038 Acyl-CoA synthetase, putative K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D PPUBIRD1_2443 pauA; PauA K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D PPUBIRD1_0820 pta; Pta K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D PPUBIRD1_1441 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PPUBIRD1_1440 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PPUBIRD1_1439 bkdB; BkdB K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_3435 Acyl-CoA dehydrogenase domain-containing protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3518 fadB_3; FadB_3 K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D PPUBIRD1_4008 accA; AccA K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PPUBIRD1_0609 Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PPUBIRD1_0608 accC_2; AccC_2 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PPUBIRD1_3674 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PPUBIRD1_0646 Omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PPUBIRD1_1666 sucC; SucC K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PPUBIRD1_1667 sucD; SucD K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PPUBIRD1_0647 mmsA; MmsA K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PPUBIRD1_4365 Methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PPUBIRD1_3351 Methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D PPUBIRD1_3348 prpD; PrpD K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D PPUBIRD1_3350 Aconitate hydratase K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117]
D PPUBIRD1_3349 Putative AcnD-accessory protein PrpF K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-]
D PPUBIRD1_3347 Aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PPUBIRD1_3352 prpB; PrpB K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:ppb00650]
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2451 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PPUBIRD1_2490 paaC; PaaC K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PPUBIRD1_2007 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PPUBIRD1_3518 fadB_3; FadB_3 K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3435 Acyl-CoA dehydrogenase domain-containing protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D PPUBIRD1_4331 Putative reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D PPUBIRD1_1345 phaJ1; PhaJ1 K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
D PPUBIRD1_4791 phaA; PhaA K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D PPUBIRD1_4793 phaC; PhaC K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D PPUBIRD1_1866 Maleate cis-trans isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1]
D PPUBIRD1_1661 sdhA; SdhA K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PPUBIRD1_1662 sdhB; SdhB K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PPUBIRD1_1659 sdhC; SdhC K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PPUBIRD1_1660 sdhD; SdhD K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PPUBIRD1_0237 gabT; GabT K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19]
D PPUBIRD1_0236 gabD; GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PPUBIRD1_2581 Aldehyde dehydrogenase family protein K08324 sad; succinate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.24]
D PPUBIRD1_0183 Acetyl-CoA hydrolase/transferase family protein K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PPUBIRD1_3027 Iron-containing alcohol dehydrogenase K00043 gbd; 4-hydroxybutyrate dehydrogenase [EC:1.1.1.61]
D PPUBIRD1_2254 Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PPUBIRD1_2613 3-oxoacid CoA-transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D PPUBIRD1_2612 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D PPUBIRD1_2649 Acetoacetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D PPUBIRD1_2647 bdhA; BdhA K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D PPUBIRD1_1477 Thiamine pyrophosphate binding domain-containing protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_2415 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4166 Hypothetical protein, conserved K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4380 Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_1200 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4379 ilvH; IlvH K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PPUBIRD1_0602 Alcohol dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C 00660 C5-Branched dibasic acid metabolism [PATH:ppb00660]
D PPUBIRD1_1477 Thiamine pyrophosphate binding domain-containing protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_2415 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4166 Hypothetical protein, conserved K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4380 Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_1200 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4379 ilvH; IlvH K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PPUBIRD1_1666 sucC; SucC K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PPUBIRD1_1667 sucD; SucD K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PPUBIRD1_3170 Hypothetical protein, conserved K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D PPUBIRD1_3683 leuC; LeuC K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PPUBIRD1_3682 leuD; LeuD K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PPUBIRD1_3680 leuB; LeuB K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ppb00562]
D PPUBIRD1_0889 suhB; SuhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PPUBIRD1_0647 mmsA; MmsA K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PPUBIRD1_4365 Methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PPUBIRD1_4417 tpiA; TpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ppb00190]
D PPUBIRD1_1731 nuoA; NuoA K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D PPUBIRD1_1730 nuoB; NuoB K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D PPUBIRD1_1729 nuoCD; NuoCD K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D PPUBIRD1_1728 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D PPUBIRD1_1727 NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D PPUBIRD1_1726 NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D PPUBIRD1_1725 nuoH; NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D PPUBIRD1_1724 nuoI; NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D PPUBIRD1_1723 NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D PPUBIRD1_1722 nouK; NouK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D PPUBIRD1_1721 NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D PPUBIRD1_1720 nuoM; NuoM K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D PPUBIRD1_1719 NADH dehydrogenase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D PPUBIRD1_2868 Pyridine nucleotide-disulfide oxidoreductase family protein K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D PPUBIRD1_2147 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D PPUBIRD1_0678 ndh; Ndh K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D PPUBIRD1_1661 sdhA; SdhA K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PPUBIRD1_1662 sdhB; SdhB K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PPUBIRD1_1659 sdhC; SdhC K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PPUBIRD1_1660 sdhD; SdhD K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D PPUBIRD1_4245 petA; PetA K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D PPUBIRD1_4244 Cytochrome b/b6 domain-containing protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PPUBIRD1_4243 petC; PetC K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D PPUBIRD1_0138 Protoheme IX farnesyltransferase 1 K02257 COX10; heme o synthase [EC:2.5.1.141]
D PPUBIRD1_0860 cyoE; CyoE K02257 COX10; heme o synthase [EC:2.5.1.141]
D PPUBIRD1_0859 cyoD; CyoD K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D PPUBIRD1_0134 cox3; Cox3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D PPUBIRD1_0132 cox1; Cox1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D PPUBIRD1_0131 cox2; Cox2 K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D PPUBIRD1_0133 cox11; Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D PPUBIRD1_0137 Cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D PPUBIRD1_1601 ccoN; CcoN K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D PPUBIRD1_1606 ccoN_2; CcoN_2 K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D PPUBIRD1_1600 ccoO; CcoO K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D PPUBIRD1_1605 ccoO_2; CcoO_2 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D PPUBIRD1_1599 ccoQ; CcoQ K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D PPUBIRD1_1604 ccoQ_2; CcoQ_2 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D PPUBIRD1_1598 ccoP; CcoP K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D PPUBIRD1_1603 ccoP_2; CcoP_2 K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D PPUBIRD1_0858 cyoC; CyoC K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D PPUBIRD1_0857 cyoB; CyoB K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D PPUBIRD1_0856 cyoA; CyoA K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D PPUBIRD1_4347 cioA; CioA K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PPUBIRD1_4346 Cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D PPUBIRD1_0061 atpA; AtpA K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PPUBIRD1_0059 atpB; AtpB K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PPUBIRD1_0060 atpG; AtpG K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PPUBIRD1_0062 atpH; AtpH K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PPUBIRD1_0058 atpC; AtpC K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PPUBIRD1_0064 atpB_2; AtpB_2 K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PPUBIRD1_0063 atpF; AtpF K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PPUBIRD1_0587 ppa; Ppa K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D PPUBIRD1_5013 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PPUBIRD1_0755 Hypothetical protein, conserved K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:ppb00680]
D PPUBIRD1_0359 Glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]
D PPUBIRD1_3999 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PPUBIRD1_3998 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D PPUBIRD1_0527 Molybdopterin oxidoreductase Fe4S4 region K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PPUBIRD1_0528 Formate dehydrogenase-O major subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PPUBIRD1_3466 Formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D PPUBIRD1_0529 Formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D PPUBIRD1_3467 NADH dehydrogenase (quinone) K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D PPUBIRD1_0530 Formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D PPUBIRD1_3468 Formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D PPUBIRD1_3465 Formate dehydrogenase, delta subunit, putative K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9]
D PPUBIRD1_0711 glyA_2; GlyA_2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PPUBIRD1_0353 glyA; GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PPUBIRD1_0809 hprA; HprA K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D PPUBIRD1_1556 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PPUBIRD1_4003 eno; Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PPUBIRD1_4054 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D PPUBIRD1_0698 Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PPUBIRD1_4744 fda; Fda K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PPUBIRD1_4829 fbp; Fbp K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PPUBIRD1_2330 Hypothetical protein, conserved K08685 qhpA; quinohemoprotein amine dehydrogenase [EC:1.4.9.1]
D PPUBIRD1_0820 pta; Pta K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D PPUBIRD1_3438 fadD; FadD K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_4403 Acetyl-coenzyme A synthetase 2 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_1414 Acetyl-coenzyme A synthetase 1 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_3571 ppsA; PpsA K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D PPUBIRD1_4844 pgm; Pgm K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D PPUBIRD1_3152 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PPUBIRD1_4946 serA; SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PPUBIRD1_3845 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PPUBIRD1_4696 serB; SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:ppb00910]
D PPUBIRD1_3560 Nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D PPUBIRD1_3912 Nitrite reductase [NAD(P)H] large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D PPUBIRD1_3911 nirD; NirD K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D PPUBIRD1_0467 Hypothetical protein, conserved K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D PPUBIRD1_1953 Hypothetical protein, conserved K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D PPUBIRD1_3574 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D PPUBIRD1_0715 gdhA; GdhA K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D PPUBIRD1_1443 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4978 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4979 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_5092 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_2584 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_3473 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_1351 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4835 glnA; GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4865 gltB; GltB K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PPUBIRD1_4864 gltD; GltD K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PPUBIRD1_3227 Cyanate hydratase K01725 cynS; cyanate lyase [EC:4.2.1.104]
D PPUBIRD1_1049 arcC; ArcC K00926 arcC; carbamate kinase [EC:2.7.2.2]
D PPUBIRD1_0128 cynT; CynT K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:ppb00920]
D PPUBIRD1_1552 Sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D PPUBIRD1_4965 Sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D PPUBIRD1_4963 cysT; CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D PPUBIRD1_4962 cysW; CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D PPUBIRD1_4961 cysA; CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D PPUBIRD1_0259 tauA; TauA K15551 tauA; taurine transport system substrate-binding protein
D PPUBIRD1_0257 tauC; TauC K15552 tauC; taurine transport system permease protein
D PPUBIRD1_0258 tauB; TauB K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D PPUBIRD1_0256 tauD; TauD K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D PPUBIRD1_0263 ssuA; SsuA K15553 ssuA; sulfonate transport system substrate-binding protein
D PPUBIRD1_2266 Aliphatic sulfonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D PPUBIRD1_0265 ssuC; SsuC K15554 ssuC; sulfonate transport system permease protein
D PPUBIRD1_0266 ssuB; SsuB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PPUBIRD1_0264 ssuD; SsuD K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D PPUBIRD1_0262 ssuE; SsuE K00299 ssuE; FMN reductase [EC:1.5.1.38]
D PPUBIRD1_4256 cysNC; CysNC K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D PPUBIRD1_4257 cysD; CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PPUBIRD1_0288 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D PPUBIRD1_3358 cysH; CysH K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D PPUBIRD1_2999 Hypothetical protein, conserved K17226 soxY; sulfur-oxidizing protein SoxY
D PPUBIRD1_0911 Flavodoxin/nitric oxide synthase K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D PPUBIRD1_3913 Molybdopterin oxidoreductase K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D PPUBIRD1_3315 Sulfite reductase (ferredoxin) K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D PPUBIRD1_0082 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D PPUBIRD1_4694 rhdA; RhdA K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PPUBIRD1_4908 Rhodanese domain-containing protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PPUBIRD1_0436 glpE; GlpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D PPUBIRD1_0252 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_2596 Serine acetyltransferase-like protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_1159 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_0891 cysE; CysE K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_1328 Cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PPUBIRD1_4886 metX; MetX K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PPUBIRD1_0702 metB; MetB K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PPUBIRD1_3669 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D PPUBIRD1_2436 alkK; AlkK K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D PPUBIRD1_2241 Acyl-CoA synthetase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D PPUBIRD1_2240 Acyl-CoA dehydrogenase domain-containing protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D PPUBIRD1_3602 Acyl-CoA dehydrogenase domain-containing protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D PPUBIRD1_0407 Acyl-CoA dehydrogenase domain-containing protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D PPUBIRD1_0405 Acyl-CoA dehydrogenase domain-containing protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D PPUBIRD1_2662 Acyl-CoA dehydrogenase domain-containing protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ppb00061]
D PPUBIRD1_4008 accA; AccA K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PPUBIRD1_0609 Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PPUBIRD1_0608 accC_2; AccC_2 K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PPUBIRD1_3674 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PPUBIRD1_3708 acpP; AcpP K02078 acpP; acyl carrier protein
D PPUBIRD1_3710 Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PPUBIRD1_1463 Beta-ketoacyl-acyl-carrier-protein synthase I K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PPUBIRD1_1677 3-oxoacyl-(acyl carrier protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PPUBIRD1_3707 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_2461 3-oxoacyl-(acyl-carrier-protein) synthase II, putative K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_2919 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_2920 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_0631 fabG; FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3709 fabG_2; FabG_2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3142 Short chain dehydrogenase/reductase family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_2441 Putative oxidoreductase, short-chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_2917 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3761 fabG_3; FabG_3 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_0764 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_1678 fabA; FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D PPUBIRD1_4013 fabZ; FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PPUBIRD1_4331 Putative reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D PPUBIRD1_1348 fadD2; FadD2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_1349 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_2090 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:ppb00071]
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3517 fadA; FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D PPUBIRD1_3518 fadB_3; FadB_3 K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3435 Acyl-CoA dehydrogenase domain-containing protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D PPUBIRD1_3245 Acyl-CoA dehydrogenase domain-containing protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D PPUBIRD1_2037 Acyl-CoA dehydrogenase domain-containing protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D PPUBIRD1_3732 fadE; FadE K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D PPUBIRD1_0188 Acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PPUBIRD1_1348 fadD2; FadD2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_1349 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_2090 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_5107 rubB; RubB K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1]
D PPUBIRD1_3999 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PPUBIRD1_1896 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ppb00561]
D PPUBIRD1_2558 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PPUBIRD1_1556 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PPUBIRD1_3256 Alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D PPUBIRD1_1125 glpK; GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D PPUBIRD1_4040 plsB; PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D PPUBIRD1_3711 Phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D PPUBIRD1_0429 Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PPUBIRD1_0087 Phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PPUBIRD1_3767 plsC; PlsC K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PPUBIRD1_3980 dgkA; DgkA K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D PPUBIRD1_4641 Alpha/beta hydrolase fold project K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
C 00564 Glycerophospholipid metabolism [PATH:ppb00564]
D PPUBIRD1_1682 gpsA; GpsA K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D PPUBIRD1_1123 glpD; GlpD K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D PPUBIRD1_4040 plsB; PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D PPUBIRD1_0429 Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PPUBIRD1_0087 Phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PPUBIRD1_3767 plsC; PlsC K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PPUBIRD1_3980 dgkA; DgkA K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D PPUBIRD1_3502 Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D PPUBIRD1_0592 Ethanolamine ammonia lyase large subunit K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
D PPUBIRD1_0591 Ethanolamine ammonia-lyase light chain K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
D PPUBIRD1_4019 Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D PPUBIRD1_2064 pssA; PssA K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PPUBIRD1_0776 Phosphatidylserine synthase, putative K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PPUBIRD1_4377 pssA_2; PssA_2 K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PPUBIRD1_4695 psd; Psd K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D PPUBIRD1_1753 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D PPUBIRD1_0561 pgpA; PgpA K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D PPUBIRD1_0034 cls; Cls K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D PPUBIRD1_2510 Cardiolipin synthase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D PPUBIRD1_5070 Phospholipase D/transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:ppb00592]
D PPUBIRD1_3517 fadA; FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:ppb01040]
D PPUBIRD1_0240 Fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D PPUBIRD1_3367 Arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D PPUBIRD1_4516 Acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D PPUBIRD1_5123 Thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ppb00230]
D PPUBIRD1_4706 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D PPUBIRD1_0287 nudE; NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D PPUBIRD1_2214 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PPUBIRD1_5082 Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PPUBIRD1_0768 prsA; PrsA K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PPUBIRD1_2930 Ribose-phosphate pyrophosphokinase family protein K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PPUBIRD1_3670 purF; PurF K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PPUBIRD1_4607 Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D PPUBIRD1_3953 purN; PurN K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PPUBIRD1_4102 purT; PurT K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D PPUBIRD1_1087 Phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D PPUBIRD1_3952 purM; PurM K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D PPUBIRD1_0003 purK; PurK K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D PPUBIRD1_0004 Phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D PPUBIRD1_1278 purC; PurC K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D PPUBIRD1_1798 purB; PurB K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PPUBIRD1_4605 purH; PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PPUBIRD1_1590 apt; Apt K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PPUBIRD1_3154 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PPUBIRD1_4143 5'-nucleotidase domain-containing protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PPUBIRD1_3995 surE; SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PPUBIRD1_0286 HAD family hydrolase K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D PPUBIRD1_1608 Hypothetical protein, conserved K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D PPUBIRD1_0675 Hypothetical protein, conserved K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PPUBIRD1_0793 Hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D PPUBIRD1_1081 guaB; GuaB K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PPUBIRD1_0900 ndk; Ndk K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PPUBIRD1_4889 Nucleoside-triphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D PPUBIRD1_5059 xpt; Xpt K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D PPUBIRD1_1577 xdhA; XdhA K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4]
D PPUBIRD1_1576 xdhB; XdhB K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4]
D PPUBIRD1_2455 Oxidoreductase, large subunit, putative K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
D PPUBIRD1_2456 Oxidoreductase, molybdopterin-binding subunit K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
D PPUBIRD1_2457 Oxidoreductase, small subunit, putative K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D PPUBIRD1_1082 guaA; GuaA K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PPUBIRD1_1574 Guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D PPUBIRD1_5089 gmk_2; Gmk_2 K00942 gmk; guanylate kinase [EC:2.7.4.8]
D PPUBIRD1_1220 nrdA; NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PPUBIRD1_1218 nrdB; NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PPUBIRD1_3549 Deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1]
D PPUBIRD1_5095 spoT; SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PPUBIRD1_5012 Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D PPUBIRD1_3961 GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D PPUBIRD1_5017 cyaA; CyaA K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D PPUBIRD1_4676 purA; PurA K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PPUBIRD1_4562 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D PPUBIRD1_2066 Decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D PPUBIRD1_0641 Adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D PPUBIRD1_4053 adk; Adk K00939 adk; adenylate kinase [EC:2.7.4.3]
D PPUBIRD1_3960 mazG; MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PPUBIRD1_4704 Icc protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D PPUBIRD1_0437 apaH; ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D PPUBIRD1_4256 cysNC; CysNC K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D PPUBIRD1_4257 cysD; CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PPUBIRD1_1570 Transthyretin family protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D PPUBIRD1_1568 Uric acid degradation bifunctional protein PucL K13485 PRHOXNB; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]
D PPUBIRD1_1541 Hydantoin racemase, putative K16841 hpxA; allantoin racemase [EC:5.1.99.3]
D PPUBIRD1_2085 Hydantoin racemase-like protein K16841 hpxA; allantoin racemase [EC:5.1.99.3]
D PPUBIRD1_1569 Chitin deacetylase K16842 hpxB; allantoinase [EC:3.5.2.5]
D PPUBIRD1_2263 Hypothetical protein, conserved K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26]
D PPUBIRD1_1567 Ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3]
D PPUBIRD1_2889 ureC; UreC K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D PPUBIRD1_2890 ureB; UreB K01429 ureB; urease subunit beta [EC:3.5.1.5]
D PPUBIRD1_2891 ureA; UreA K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D PPUBIRD1_1049 arcC; ArcC K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:ppb00240]
D PPUBIRD1_4425 carB; CarB K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PPUBIRD1_4426 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PPUBIRD1_4786 pyrB; PyrB K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PPUBIRD1_1136 pyrC; PyrC K01465 URA4; dihydroorotase [EC:3.5.2.3]
D PPUBIRD1_4787 pyrC_2; PyrC_2 K01465 URA4; dihydroorotase [EC:3.5.2.3]
D PPUBIRD1_3557 pyrD; PyrD K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D PPUBIRD1_5084 pyrE; PyrE K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D PPUBIRD1_3797 pyrF; PyrF K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D PPUBIRD1_4022 pyrH; PyrH K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D PPUBIRD1_0900 ndk; Ndk K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PPUBIRD1_3960 mazG; MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PPUBIRD1_0988 maf; Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D PPUBIRD1_4742 Hypothetical protein, conserved K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D PPUBIRD1_4005 pyrG; PyrG K01937 pyrG; CTP synthase [EC:6.3.4.2]
D PPUBIRD1_3842 cmk; Cmk K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D PPUBIRD1_3154 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PPUBIRD1_4143 5'-nucleotidase domain-containing protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PPUBIRD1_3995 surE; SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PPUBIRD1_1608 Hypothetical protein, conserved K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D PPUBIRD1_0792 upp; Upp K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D PPUBIRD1_4785 pyrR; PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PPUBIRD1_2066 Decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D PPUBIRD1_2549 N-isopropylammelide isopropylaminohydrolase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D PPUBIRD1_1150 dcd; Dcd K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D PPUBIRD1_1220 nrdA; NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PPUBIRD1_1218 nrdB; NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D PPUBIRD1_3704 tmk; Tmk K00943 tmk; dTMP kinase [EC:2.7.4.9]
D PPUBIRD1_5080 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PPUBIRD1_4932 thyA; ThyA K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D PPUBIRD1_1783 Putative oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D PPUBIRD1_1782 Dihydropyrimidine dehydrogenase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D PPUBIRD1_1784 D-hydantoinase/dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D PPUBIRD1_3138 Allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D PPUBIRD1_0665 Allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D PPUBIRD1_1786 Allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D PPUBIRD1_2444 Putative flavoprotein oxidoreductase K09024 rutF; flavin reductase [EC:1.5.1.-]
D PPUBIRD1_0526 Short chain dehydrogenase/reductase family oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ppb00250]
D PPUBIRD1_4131 nadB; NadB K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PPUBIRD1_0534 ansB; AnsB K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PPUBIRD1_1205 Asparaginase/glutaminase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PPUBIRD1_3225 Glutaminase-asparaginase K05597 aspQ; glutamin-(asparagin-)ase [EC:3.5.1.38]
D PPUBIRD1_3863 asnB; AsnB K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PPUBIRD1_0910 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D PPUBIRD1_3743 Uncharacterized aminotransferase yfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PPUBIRD1_0008 aspA; AspA K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D PPUBIRD1_1138 argG; ArgG K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PPUBIRD1_0213 arlY; ArlY K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PPUBIRD1_4676 purA; PurA K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PPUBIRD1_1798 purB; PurB K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PPUBIRD1_4786 pyrB; PyrB K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PPUBIRD1_0237 gabT; GabT K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19]
D PPUBIRD1_0236 gabD; GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PPUBIRD1_2581 Aldehyde dehydrogenase family protein K08324 sad; succinate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.24]
D PPUBIRD1_4865 gltB; GltB K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PPUBIRD1_4864 gltD; GltD K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PPUBIRD1_3574 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D PPUBIRD1_0715 gdhA; GdhA K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D PPUBIRD1_4730 putA; PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PPUBIRD1_1443 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4978 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4979 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_5092 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_2584 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_3473 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_1351 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4835 glnA; GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4425 carB; CarB K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PPUBIRD1_4426 Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PPUBIRD1_3162 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D PPUBIRD1_0055 glmS; GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PPUBIRD1_3670 purF; PurF K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ppb00260]
D PPUBIRD1_1430 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PPUBIRD1_3679 asd; Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PPUBIRD1_4089 hom; Hom K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PPUBIRD1_0707 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PPUBIRD1_0149 thrB; ThrB K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D PPUBIRD1_4088 Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PPUBIRD1_0705 Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PPUBIRD1_0351 Low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D PPUBIRD1_0711 glyA_2; GlyA_2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PPUBIRD1_0353 glyA; GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PPUBIRD1_0809 hprA; HprA K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D PPUBIRD1_4298 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D PPUBIRD1_2558 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PPUBIRD1_1556 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D PPUBIRD1_4844 pgm; Pgm K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D PPUBIRD1_3152 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PPUBIRD1_4946 serA; SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PPUBIRD1_3845 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PPUBIRD1_4696 serB; SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D PPUBIRD1_0526 Short chain dehydrogenase/reductase family oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D PPUBIRD1_4769 Amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PPUBIRD1_4987 gcvP_2; GcvP_2 K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PPUBIRD1_1038 gcvP; GcvP K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PPUBIRD1_4989 gcvT_2; GcvT_2 K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PPUBIRD1_1036 gcvT; GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_4988 Glycine cleavage system H protein 2 K02437 gcvH; glycine cleavage system H protein
D PPUBIRD1_1039 Glycine cleavage system H protein 1 K02437 gcvH; glycine cleavage system H protein
D PPUBIRD1_2061 Creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3]
D PPUBIRD1_2064 pssA; PssA K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PPUBIRD1_0776 Phosphatidylserine synthase, putative K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PPUBIRD1_4377 pssA_2; PssA_2 K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D PPUBIRD1_2104 betA; BetA K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D PPUBIRD1_4853 Choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D PPUBIRD1_4852 betB; BetB K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D PPUBIRD1_0751 Betaine-aldehyde dehydrogenase, putative K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D PPUBIRD1_0344 Rieske (2Fe-2S) domain protein K00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251]
D PPUBIRD1_0346 Oxidoreductase FAD-binding domain protein K21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251]
D PPUBIRD1_0340 Oxidoreductase, FMN-binding protein K21833 dgcA; N,N-dimethylglycine/sarcosine dehydrogenase [EC:1.5.7.3]
D PPUBIRD1_0341 Iron-sulfur cluster-binding protein K21834 dgcB; N,N-dimethylglycine/sarcosine dehydrogenase ferredoxin subunit
D PPUBIRD1_0342 Electron transfer flavoprotein, alpha subunit-like protein K25960 etfA; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit alpha
D PPUBIRD1_0343 Electron transfer flavoprotein, alpha/beta-subunit-like protein K25961 etfB; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit beta
D PPUBIRD1_0356 soxA_2; SoxA_2 K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1]
D PPUBIRD1_0354 soxB; SoxB K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1]
D PPUBIRD1_0357 soxG; SoxG K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1]
D PPUBIRD1_0355 soxD; SoxD K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1]
D PPUBIRD1_1304 Cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D PPUBIRD1_2588 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PPUBIRD1_1037 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PPUBIRD1_0326 sda; Sda K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PPUBIRD1_2547 Hypothetical protein, conserved K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PPUBIRD1_2345 ilvA; IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PPUBIRD1_4940 Threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PPUBIRD1_2805 L-serine dehydratase, putative K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D PPUBIRD1_2990 Probable D-serine dehydratase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D PPUBIRD1_2040 alr; Alr K25317 alr; amino-acid racemase [EC:5.1.1.10]
D PPUBIRD1_0110 trpA; TrpA K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PPUBIRD1_0111 trpB; TrpB K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PPUBIRD1_1626 Diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
C 00270 Cysteine and methionine metabolism [PATH:ppb00270]
D PPUBIRD1_0252 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_2596 Serine acetyltransferase-like protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_1159 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_0891 cysE; CysE K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_1328 Cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PPUBIRD1_1304 Cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D PPUBIRD1_3310 metH; MetH K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PPUBIRD1_4334 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PPUBIRD1_2975 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PPUBIRD1_4751 metK; MetK K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PPUBIRD1_2521 Nucleosidase, putative K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D PPUBIRD1_0675 Hypothetical protein, conserved K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PPUBIRD1_3847 mtnA; MtnA K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D PPUBIRD1_3780 Oxidase, putative K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D PPUBIRD1_3696 tyrB_2; TyrB_2 K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_2203 tyrB; TyrB K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_4254 Methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D PPUBIRD1_3738 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D PPUBIRD1_4761 Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PPUBIRD1_3642 1-aminocyclopropane-1-carboxylate deaminase-like protein K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D PPUBIRD1_1430 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PPUBIRD1_3679 asd; Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PPUBIRD1_4089 hom; Hom K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PPUBIRD1_0707 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PPUBIRD1_4886 metX; MetX K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PPUBIRD1_0702 metB; MetB K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PPUBIRD1_3155 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D PPUBIRD1_3669 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D PPUBIRD1_2284 Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PPUBIRD1_0269 gshA; GshA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D PPUBIRD1_4781 gshB; GshB K01920 gshB; glutathione synthase [EC:6.3.2.3]
D PPUBIRD1_4694 rhdA; RhdA K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PPUBIRD1_4908 Rhodanese domain-containing protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PPUBIRD1_2040 alr; Alr K25317 alr; amino-acid racemase [EC:5.1.1.10]
D PPUBIRD1_0698 Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PPUBIRD1_2588 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PPUBIRD1_1037 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PPUBIRD1_0326 sda; Sda K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PPUBIRD1_2805 L-serine dehydratase, putative K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D PPUBIRD1_3963 cysM; CysM K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D PPUBIRD1_3152 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PPUBIRD1_4946 serA; SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PPUBIRD1_3845 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ppb00280]
D PPUBIRD1_2284 Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PPUBIRD1_4312 Leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D PPUBIRD1_1441 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PPUBIRD1_1440 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PPUBIRD1_1439 bkdB; BkdB K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_3435 Acyl-CoA dehydrogenase domain-containing protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D PPUBIRD1_3245 Acyl-CoA dehydrogenase domain-containing protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D PPUBIRD1_2037 Acyl-CoA dehydrogenase domain-containing protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D PPUBIRD1_1760 ivd; Ivd K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3518 fadB_3; FadB_3 K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D PPUBIRD1_3517 fadA; FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D PPUBIRD1_4364 mmsB; MmsB K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D PPUBIRD1_0647 mmsA; MmsA K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PPUBIRD1_4365 Methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PPUBIRD1_0646 Omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PPUBIRD1_1757 Carbamoyl-phosphate synthase L chain, ATP-binding protein K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D PPUBIRD1_1759 Methylcrotonoyl-CoA carboxylase beta chain K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D PPUBIRD1_1758 Gamma-carboxygeranoyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D PPUBIRD1_2254 Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PPUBIRD1_2613 3-oxoacid CoA-transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D PPUBIRD1_2612 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D PPUBIRD1_2649 Acetoacetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ppb00290]
D PPUBIRD1_2547 Hypothetical protein, conserved K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PPUBIRD1_2345 ilvA; IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PPUBIRD1_4940 Threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PPUBIRD1_2805 L-serine dehydratase, putative K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D PPUBIRD1_3683 leuC; LeuC K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PPUBIRD1_3682 leuD; LeuD K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PPUBIRD1_3680 leuB; LeuB K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D PPUBIRD1_1477 Thiamine pyrophosphate binding domain-containing protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_2415 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4166 Hypothetical protein, conserved K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4380 Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_1200 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4379 ilvH; IlvH K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PPUBIRD1_4378 ilvC; IlvC K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PPUBIRD1_4918 ilvD; IlvD K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PPUBIRD1_2284 Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PPUBIRD1_4312 Leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D PPUBIRD1_3743 Uncharacterized aminotransferase yfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PPUBIRD1_1075 leuA; LeuA K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ppb00300]
D PPUBIRD1_4089 hom; Hom K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PPUBIRD1_0707 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PPUBIRD1_1430 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PPUBIRD1_3679 asd; Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PPUBIRD1_1275 dapA_2; DapA_2 K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PPUBIRD1_3051 Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PPUBIRD1_3615 Dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PPUBIRD1_0048 dapA; DapA K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PPUBIRD1_4427 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D PPUBIRD1_4030 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D PPUBIRD1_0409 Aminotransferase class-III K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PPUBIRD1_4027 Hypothetical protein, conserved K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D PPUBIRD1_4035 dapE; DapE K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PPUBIRD1_5023 dapF; DapF K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PPUBIRD1_3577 lysA; LysA K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PPUBIRD1_5022 lysA_2; LysA_2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PPUBIRD1_4231 murE; MurE K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PPUBIRD1_4230 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:ppb00310]
D PPUBIRD1_5052 Aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D PPUBIRD1_1742 Aminotransferase class-III K26062 K26062; 2-aminoadipate transaminase [EC:2.6.1.39]
D PPUBIRD1_1664 Dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0188 Acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3518 fadB_3; FadB_3 K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_0418 Amine oxidase K00468 davB; lysine 2-monooxygenase [EC:1.13.12.2]
D PPUBIRD1_0417 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01506 davA; 5-aminopentanamidase [EC:3.5.1.30]
D PPUBIRD1_2040 alr; Alr K25317 alr; amino-acid racemase [EC:5.1.1.10]
D PPUBIRD1_4077 Gamma-aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
D PPUBIRD1_0237 gabT; GabT K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19]
D PPUBIRD1_0236 gabD; GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PPUBIRD1_2827 Protein csiD K15737 csiD; glutarate dioxygenase [EC:1.14.11.64]
D PPUBIRD1_2826 Hydroxyglutarate oxidase K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]
D PPUBIRD1_5054 Hypothetical protein, conserved K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D PPUBIRD1_1407 Hypothetical protein, conserved K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
D PPUBIRD1_0189 Formyl-CoA transferase K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-]
D PPUBIRD1_2196 FAD dependent oxidoreductase K26064 amaD; D-lysine oxidase
D PPUBIRD1_2201 dpkA; DpkA K13609 dpkA; delta1-piperideine-2-carboxylate reductase [EC:1.5.1.21]
D PPUBIRD1_5051 FAD dependent oxidoreductase K26065 amaA; L-pipecolate oxidase
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:ppb00220]
D PPUBIRD1_1129 Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D PPUBIRD1_1050 argI; ArgI K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D PPUBIRD1_1138 argG; ArgG K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PPUBIRD1_0213 arlY; ArlY K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PPUBIRD1_2814 Allophanate hydrolase subunit 1 K01941 uca; urea carboxylase [EC:6.3.4.6]
D PPUBIRD1_2889 ureC; UreC K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D PPUBIRD1_2890 ureB; UreB K01429 ureB; urease subunit beta [EC:3.5.1.5]
D PPUBIRD1_2891 ureA; UreA K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D PPUBIRD1_1051 arcA; ArcA K01478 arcA; arginine deiminase [EC:3.5.3.6]
D PPUBIRD1_3162 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D PPUBIRD1_3225 Glutaminase-asparaginase K05597 aspQ; glutamin-(asparagin-)ase [EC:3.5.1.38]
D PPUBIRD1_1443 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4978 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4979 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_5092 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_2584 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_3473 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_1351 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4835 glnA; GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_3574 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D PPUBIRD1_0715 gdhA; GdhA K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D PPUBIRD1_1049 arcC; ArcC K00926 arcC; carbamate kinase [EC:2.7.2.2]
D PPUBIRD1_3743 Uncharacterized aminotransferase yfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PPUBIRD1_4980 argA; ArgA K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D PPUBIRD1_4216 argJ; ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D PPUBIRD1_5083 argB; ArgB K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D PPUBIRD1_2156 N-acetyl-gamma-glutamyl-phosphate reductase 2 K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D PPUBIRD1_0469 argC; ArgC K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D PPUBIRD1_0409 Aminotransferase class-III K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PPUBIRD1_4981 Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
D PPUBIRD1_2223 Acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:ppb00330]
D PPUBIRD1_2549 N-isopropylammelide isopropylaminohydrolase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D PPUBIRD1_2279 5-oxoprolinase (ATP-hydrolyzing) K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D PPUBIRD1_2280 Hydantoinase B/oxoprolinase K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14]
D PPUBIRD1_2061 Creatinase K08688 E3.5.3.3; creatinase [EC:3.5.3.3]
D PPUBIRD1_1710 Lysine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D PPUBIRD1_0617 speA; SpeA K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D PPUBIRD1_3455 Agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D PPUBIRD1_0293 aguA; AguA K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D PPUBIRD1_0915 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D PPUBIRD1_2806 nspC; NspC K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D PPUBIRD1_4977 Putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D PPUBIRD1_3471 Putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D PPUBIRD1_3092 Putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PPUBIRD1_4077 Gamma-aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
D PPUBIRD1_5072 Aldehyde dehydrogenase family protein K12254 kauB; 4-guanidinobutyraldehyde dehydrogenase / NAD-dependent aldehyde dehydrogenase [EC:1.2.1.54 1.2.1.-]
D PPUBIRD1_4769 Amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PPUBIRD1_2041 aspC; AspC K12252 aruH; arginine:pyruvate transaminase [EC:2.6.1.84]
D PPUBIRD1_2039 Hypothetical protein, conserved K12253 aruI; 5-guanidino-2-oxopentanoate decarboxylase [EC:4.1.1.75]
D PPUBIRD1_1376 Agmatinase K12255 gbuA; guanidinobutyrase [EC:3.5.3.7]
D PPUBIRD1_3049 amiE; AmiE K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2627 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2722 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2803 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_1422 aruF; AruF K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D PPUBIRD1_1423 Arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D PPUBIRD1_1425 astB; AstB K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D PPUBIRD1_1421 argD; ArgD K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D PPUBIRD1_1424 N-succinylglutamate 5-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D PPUBIRD1_1427 Succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D PPUBIRD1_3233 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D PPUBIRD1_5067 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D PPUBIRD1_2586 Oxidoreductase, putative K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D PPUBIRD1_1350 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D PPUBIRD1_3091 Aldehyde dehydrogenase family protein K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99]
D PPUBIRD1_4884 Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D PPUBIRD1_4730 putA; PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PPUBIRD1_2260 Ornithine cyclodeaminase K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12]
D PPUBIRD1_0732 proB; ProB K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PPUBIRD1_4594 proA; ProA K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D PPUBIRD1_4816 pip; Pip K01259 pip; proline iminopeptidase [EC:3.4.11.5]
C 00340 Histidine metabolism [PATH:ppb00340]
D PPUBIRD1_1018 hisG; HisG K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D PPUBIRD1_4677 hisZ; HisZ K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D PPUBIRD1_4803 hisE; HisE K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D PPUBIRD1_4802 hisI; HisI K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D PPUBIRD1_0321 hisA; HisA K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D PPUBIRD1_0319 hisH; HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D PPUBIRD1_0322 hisF; HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D PPUBIRD1_0318 hisB; HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D PPUBIRD1_1020 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PPUBIRD1_2575 Inositol monophosphatase family protein K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D PPUBIRD1_1019 hisD; HisD K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D PPUBIRD1_4820 Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D PPUBIRD1_4821 hutU; HutU K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D PPUBIRD1_4818 Imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D PPUBIRD1_4825 N-formimino-L-glutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D PPUBIRD1_4817 hutG; HutG K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PPUBIRD1_4769 Amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:ppb00350]
D PPUBIRD1_1020 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PPUBIRD1_3696 tyrB_2; TyrB_2 K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_2203 tyrB; TyrB K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_2355 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D PPUBIRD1_4316 Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D PPUBIRD1_4314 Maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D PPUBIRD1_4315 Fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D PPUBIRD1_3125 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D PPUBIRD1_4769 Amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PPUBIRD1_2327 Aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D PPUBIRD1_3999 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PPUBIRD1_1896 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PPUBIRD1_0236 gabD; GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PPUBIRD1_3908 Fumarylacetoacetate hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:ppb00360]
D PPUBIRD1_1411 phhA; PhhA K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D PPUBIRD1_3125 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D PPUBIRD1_4769 Amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PPUBIRD1_2327 Aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D PPUBIRD1_2493 phaE; PhaE K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D PPUBIRD1_2491 Phenylacetic acid degradation protein PaaD K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D PPUBIRD1_2494 paaA; PaaA K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
D PPUBIRD1_2495 paaH; PaaH K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
D PPUBIRD1_2496 Phenylacetate-CoA oxygenase, PaaI subunit K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
D PPUBIRD1_2497 Phenylacetate-CoA oxygenase, PaaJ subunit K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
D PPUBIRD1_2498 phaI; PhaI K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D PPUBIRD1_2447 Putative enoyl-CoA hydratase (PaaG-like) K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D PPUBIRD1_2036 Enoyl-CoA hydratase/isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D PPUBIRD1_2489 Enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D PPUBIRD1_2502 Protein maoC K02618 paaZ; oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.3.2.12 1.2.1.91]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2451 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PPUBIRD1_2490 paaC; PaaC K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PPUBIRD1_2007 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PPUBIRD1_1020 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PPUBIRD1_3696 tyrB_2; TyrB_2 K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_2203 tyrB; TyrB K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_2355 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D PPUBIRD1_1540 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D PPUBIRD1_5064 dadA; DadA K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D PPUBIRD1_2060 Catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D PPUBIRD1_3049 amiE; AmiE K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2627 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2722 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2803 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_3025 Hydratase/decarboxylase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00380 Tryptophan metabolism [PATH:ppb00380]
D PPUBIRD1_1664 Dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0188 Acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3518 fadB_3; FadB_3 K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3125 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D PPUBIRD1_4769 Amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PPUBIRD1_2723 Nitrile hydratase, alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D PPUBIRD1_2724 Nitrile hydratase K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84]
D PPUBIRD1_3049 amiE; AmiE K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2627 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2722 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2803 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_0518 katA; KatA K03781 katE; catalase [EC:1.11.1.6]
D PPUBIRD1_0143 katE; KatE K03781 katE; catalase [EC:1.11.1.6]
D PPUBIRD1_2848 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6]
D PPUBIRD1_2060 Catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ppb00400]
D PPUBIRD1_3749 Phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PPUBIRD1_2640 Phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PPUBIRD1_3362 aroF; AroF K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PPUBIRD1_4867 aroB; AroB K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D PPUBIRD1_0610 aroQ; AroQ K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D PPUBIRD1_3277 3-dehydroquinate dehydratase 2 K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D PPUBIRD1_2684 aroQ_2; AroQ_2 K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D PPUBIRD1_3122 4-hydroxyphenylpyruvate dioxygenase K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118]
D PPUBIRD1_3278 aroE_3; AroE_3 K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24]
D PPUBIRD1_0103 aroE; AroE K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D PPUBIRD1_2685 aroE_2; AroE_2 K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D PPUBIRD1_2225 Probable quinate dehydrogenase K05358 quiA; quinate dehydrogenase (quinone) [EC:1.1.5.8]
D PPUBIRD1_4868 aroK; AroK K00891 aroK; shikimate kinase [EC:2.7.1.71]
D PPUBIRD1_3843 3-phosphoshikimate 1-carboxyvinyltransferase K24018 K24018; cyclohexadieny/prephenate dehydrogenase / 3-phosphoshikimate 1-carboxyvinyltransferase [EC:1.3.1.43 1.3.1.12 2.5.1.19]
D PPUBIRD1_3782 aroC; AroC K01736 aroC; chorismate synthase [EC:4.2.3.5]
D PPUBIRD1_0455 Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PPUBIRD1_0457 trpG; TrpG K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PPUBIRD1_0458 trpD; TrpD K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D PPUBIRD1_3675 trpF; TrpF K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D PPUBIRD1_0459 trpC; TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D PPUBIRD1_0110 trpA; TrpA K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PPUBIRD1_0111 trpB; TrpB K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PPUBIRD1_4836 Chorismate mutase, putative K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D PPUBIRD1_3844 pheA; PheA K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D PPUBIRD1_1020 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PPUBIRD1_3696 tyrB_2; TyrB_2 K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_2203 tyrB; TyrB K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_1411 phhA; PhhA K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:ppb00410]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PPUBIRD1_4077 Gamma-aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
D PPUBIRD1_4401 panC; PanC K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D PPUBIRD1_1783 Putative oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D PPUBIRD1_1782 Dihydropyrimidine dehydrogenase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D PPUBIRD1_1784 D-hydantoinase/dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D PPUBIRD1_3138 Allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D PPUBIRD1_0665 Allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D PPUBIRD1_1786 Allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D PPUBIRD1_0646 Omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3518 fadB_3; FadB_3 K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D PPUBIRD1_3435 Acyl-CoA dehydrogenase domain-containing protein K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D PPUBIRD1_0647 mmsA; MmsA K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PPUBIRD1_4365 Methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:ppb00430]
D PPUBIRD1_2258 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PPUBIRD1_4355 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PPUBIRD1_0256 tauD; TauD K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D PPUBIRD1_3574 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D PPUBIRD1_0820 pta; Pta K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
C 00440 Phosphonate and phosphinate metabolism [PATH:ppb00440]
D PPUBIRD1_3443 Phosphonoacetaldehyde hydrolase K05306 phnX; phosphonoacetaldehyde hydrolase [EC:3.11.1.1]
D PPUBIRD1_3442 2-aminoethylphosphonate--pyruvate transaminase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
C 00450 Selenocompound metabolism [PATH:ppb00450]
D PPUBIRD1_0702 metB; MetB K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PPUBIRD1_3310 metH; MetH K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PPUBIRD1_4334 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PPUBIRD1_2975 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PPUBIRD1_1304 Cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D PPUBIRD1_4254 Methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D PPUBIRD1_4256 cysNC; CysNC K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D PPUBIRD1_4257 cysD; CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PPUBIRD1_0872 Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D PPUBIRD1_0532 selA; SelA K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D PPUBIRD1_1147 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ppb00460]
D PPUBIRD1_4156 Periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PPUBIRD1_2258 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PPUBIRD1_4355 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PPUBIRD1_0534 ansB; AnsB K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PPUBIRD1_1205 Asparaginase/glutaminase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PPUBIRD1_0711 glyA_2; GlyA_2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PPUBIRD1_0353 glyA; GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:ppb00470]
D PPUBIRD1_5063 dadX; DadX K01775 alr; alanine racemase [EC:5.1.1.1]
D PPUBIRD1_4224 ddl; Ddl K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PPUBIRD1_2040 alr; Alr K25317 alr; amino-acid racemase [EC:5.1.1.10]
D PPUBIRD1_3162 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D PPUBIRD1_3225 Glutaminase-asparaginase K05597 aspQ; glutamin-(asparagin-)ase [EC:3.5.1.38]
D PPUBIRD1_0782 Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PPUBIRD1_4228 murD; MurD K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PPUBIRD1_2990 Probable D-serine dehydratase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D PPUBIRD1_5023 dapF; DapF K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PPUBIRD1_3577 lysA; LysA K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PPUBIRD1_5022 lysA_2; LysA_2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PPUBIRD1_3408 FAD dependent oxidoreductase K19746 dauA; D-arginine dehydrogenase [EC:1.4.99.6]
D PPUBIRD1_1294 Proline racemase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8]
D PPUBIRD1_1291 FAD dependent oxidoreductase K21060 lhpB; D-hydroxyproline dehydrogenase [EC:1.5.99.-]
D PPUBIRD1_1293 Dihydrodipicolinate synthetase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22]
D PPUBIRD1_2190 Aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D PPUBIRD1_1292 Aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D PPUBIRD1_3095 Aldehyde dehydrogenase family protein K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D PPUBIRD1_1540 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D PPUBIRD1_5064 dadA; DadA K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:ppb00480]
D PPUBIRD1_2258 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PPUBIRD1_4355 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PPUBIRD1_5007 ChaC family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D PPUBIRD1_1322 Hypothetical protein, conserved K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D PPUBIRD1_2815 Hypothetical protein, conserved K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D PPUBIRD1_1323 Allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D PPUBIRD1_1324 Urea amidolyase related protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D PPUBIRD1_2522 Carboxylate-amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D PPUBIRD1_0269 gshA; GshA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D PPUBIRD1_4781 gshB; GshB K01920 gshB; glutathione synthase [EC:6.3.2.3]
D PPUBIRD1_1031 pepA; PepA K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PPUBIRD1_3634 pepN; PepN K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PPUBIRD1_2020 Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_3146 Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_3791 Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_0212 gstE; GstE K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_1207 Glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_4215 Glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_3731 Glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_1960 Glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D PPUBIRD1_1802 Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PPUBIRD1_1803 Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PPUBIRD1_2404 Gluconate 2-dehydrogenase K00032 E1.1.1.43; phosphogluconate 2-dehydrogenase [EC:1.1.1.43]
D PPUBIRD1_1777 gnd; Gnd K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PPUBIRD1_0020 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PPUBIRD1_1778 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PPUBIRD1_1072 zwf; Zwf K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PPUBIRD1_3741 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D PPUBIRD1_0822 Glutathione peroxidase, putative K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D PPUBIRD1_3931 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D PPUBIRD1_2973 Redoxin domain protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D PPUBIRD1_0915 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:ppb00540]
D PPUBIRD1_4012 lpxA; LpxA K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PPUBIRD1_4219 lpxC; LpxC K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D PPUBIRD1_4014 lpxD; LpxD K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D PPUBIRD1_2834 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D PPUBIRD1_4011 lpxB; LpxB K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D PPUBIRD1_3724 lpxK; LpxK K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D PPUBIRD1_1010 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PPUBIRD1_3813 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PPUBIRD1_4004 kdsA_2; KdsA_2 K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D PPUBIRD1_3810 kdsA; KdsA K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D PPUBIRD1_1009 YrbI family phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D PPUBIRD1_3811 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D PPUBIRD1_3722 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D PPUBIRD1_4711 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D PPUBIRD1_0092 Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PPUBIRD1_3882 htrB; HtrB K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PPUBIRD1_1329 Hypothetical protein, conserved K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D PPUBIRD1_3264 Aspartyl/asparaginyl beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D PPUBIRD1_1306 Hypothetical protein, conserved K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D PPUBIRD1_0783 Hypothetical protein, conserved K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D PPUBIRD1_2578 Hypothetical protein, conserved K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D PPUBIRD1_4239 gmhA; GmhA K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D PPUBIRD1_4717 Bifunctional protein hldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D PPUBIRD1_0088 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D PPUBIRD1_1475 Putative sugar kinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
D PPUBIRD1_1474 HAD superfamily hydrolase K15669 hddC; D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase [EC:2.7.7.71]
D PPUBIRD1_0376 waaC; WaaC K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D PPUBIRD1_0375 waaF; WaaF K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D PPUBIRD1_0378 waaP; WaaP K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235]
D PPUBIRD1_3101 Hypothetical protein, conserved K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-]
D PPUBIRD1_0377 waaG; WaaG K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ppb00541]
D PPUBIRD1_1959 galU; GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PPUBIRD1_0542 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PPUBIRD1_2604 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PPUBIRD1_2809 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PPUBIRD1_3825 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PPUBIRD1_3827 DTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PPUBIRD1_0292 DTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D PPUBIRD1_0541 DTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D PPUBIRD1_3826 DTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D PPUBIRD1_1471 Glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D PPUBIRD1_1472 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D PPUBIRD1_1473 Lipopolysaccharide biosynthesis protein rfbH K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D PPUBIRD1_5008 CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D PPUBIRD1_4284 algA; AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PPUBIRD1_0057 glmU; GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PPUBIRD1_3800 wecB; WecB K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D PPUBIRD1_3833 Polysaccharide biosynthesis protein K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D PPUBIRD1_3828 Polysaccharide biosynthesis protein CapD K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D PPUBIRD1_3830 wbpV; WbpV K24310 wbpV; UDP-N-acetyl-alpha-D-quinovosamine dehydrogenase [EC:1.1.1.426]
C 00550 Peptidoglycan biosynthesis [PATH:ppb00550]
D PPUBIRD1_1017 murA; MurA K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PPUBIRD1_3720 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PPUBIRD1_4225 murC; MurC K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PPUBIRD1_4228 murD; MurD K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PPUBIRD1_4231 murE; MurE K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PPUBIRD1_4224 ddl; Ddl K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PPUBIRD1_4230 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PPUBIRD1_4020 uppS; UppS K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PPUBIRD1_2873 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PPUBIRD1_4229 mraY; MraY K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PPUBIRD1_4226 murG; MurG K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PPUBIRD1_4896 mtgA; MtgA K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D PPUBIRD1_4873 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PPUBIRD1_4383 mrcB; MrcB K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D PPUBIRD1_0622 pbpC; PbpC K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D PPUBIRD1_2021 mrdA; MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PPUBIRD1_4590 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PPUBIRD1_4232 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PPUBIRD1_4586 dacA; DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D PPUBIRD1_3554 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:ppb00552]
D PPUBIRD1_2873 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PPUBIRD1_2591 WecB/TagA/CpsF family glycosyl transferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D PPUBIRD1_3828 Polysaccharide biosynthesis protein CapD K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ppb00543]
D PPUBIRD1_4274 Glycosyltransferase alg8 K19290 alg8; mannuronan synthase [EC:2.4.1.33]
D PPUBIRD1_4275 Alginate biosynthesis protein alg44 K19291 alg44; mannuronan synthase [EC:2.4.1.33]
D PPUBIRD1_4281 algI; AlgI K19294 algI; alginate O-acetyltransferase complex protein AlgI
D PPUBIRD1_4282 algJ; AlgJ K19295 algJ; alginate O-acetyltransferase complex protein AlgJ
D PPUBIRD1_4283 algF; AlgF K19296 algF; alginate O-acetyltransferase complex protein AlgF
D PPUBIRD1_4279 Alginate biosynthesis protein algX K19293 algX; alginate biosynthesis protein AlgX
D PPUBIRD1_3529 Glycosyl transferase, putative K21001 pslH; polysaccharide biosynthesis protein PslH
D PPUBIRD1_0252 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_2596 Serine acetyltransferase-like protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_1159 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_0891 cysE; CysE K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PPUBIRD1_3308 Acyltransferase 3 K16568 exoZ; exopolysaccharide production protein ExoZ
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ppb00730]
D PPUBIRD1_4709 thiC; ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D PPUBIRD1_4565 thiD; ThiD K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D PPUBIRD1_3247 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PPUBIRD1_0893 iscS; IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PPUBIRD1_4834 thiI; ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PPUBIRD1_0663 FAD dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D PPUBIRD1_0567 dxs; Dxs K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PPUBIRD1_4893 thiG; ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D PPUBIRD1_4566 thiE; ThiE K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D PPUBIRD1_0560 thiL; ThiL K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D PPUBIRD1_4690 Putative ribosome biogenesis GTPase rsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PPUBIRD1_4053 adk; Adk K00939 adk; adenylate kinase [EC:2.7.4.3]
D PPUBIRD1_2552 TenA family transcription regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D PPUBIRD1_2553 TenA family transcription regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:ppb00740]
D PPUBIRD1_0563 ribA; RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D PPUBIRD1_0557 ribBA; RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PPUBIRD1_1966 Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PPUBIRD1_0555 ribD; RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PPUBIRD1_5026 HAD family hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D PPUBIRD1_0570 ribB; RibB K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D PPUBIRD1_0558 ribH; RibH K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D PPUBIRD1_0556 Riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D PPUBIRD1_2818 ribE; RibE K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D PPUBIRD1_0653 Bifunctional riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D PPUBIRD1_0262 ssuE; SsuE K00299 ssuE; FMN reductase [EC:1.5.1.38]
D PPUBIRD1_3943 Cob(II)yrinic acid a,c-diamide reductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79]
D PPUBIRD1_4706 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D PPUBIRD1_0597 ubiD; UbiD K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:ppb00750]
D PPUBIRD1_1175 Pyridoxine/pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D PPUBIRD1_0026 Pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D PPUBIRD1_4748 epd; Epd K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D PPUBIRD1_3536 Erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D PPUBIRD1_3845 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PPUBIRD1_0440 pdxA; PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D PPUBIRD1_4120 pdxJ; PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D PPUBIRD1_4088 Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PPUBIRD1_0705 Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ppb00760]
D PPUBIRD1_4131 nadB; NadB K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PPUBIRD1_1269 nadA; NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D PPUBIRD1_0831 nadC; NadC K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D PPUBIRD1_4656 pncB; PncB K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D PPUBIRD1_2128 Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D PPUBIRD1_3154 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PPUBIRD1_4143 5'-nucleotidase domain-containing protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PPUBIRD1_3995 surE; SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PPUBIRD1_4593 nadD; NadD K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D PPUBIRD1_3960 mazG; MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PPUBIRD1_1791 nudC; NudC K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D PPUBIRD1_4657 nadE; NadE K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D PPUBIRD1_3988 CinA domain-containing protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D PPUBIRD1_2129 Nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D PPUBIRD1_3639 ppnK; PpnK K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D PPUBIRD1_3503 sthA; SthA K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D PPUBIRD1_0185 Nicotinamide nucleotide transhydrogenase subunit alpha 2 K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D PPUBIRD1_0186 Nicotinamide nucleotide transhydrogenase subunit alpha 1 K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D PPUBIRD1_0184 pntB; PntB K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D PPUBIRD1_1861 2Fe-2S iron-sulfur cluster binding domain-containing protein K18029 nicA; nicotinate dehydrogenase subunit A [EC:1.17.2.1]
D PPUBIRD1_1860 ndhL; NdhL K18030 nicB; nicotinate dehydrogenase subunit B [EC:1.17.2.1]
D PPUBIRD1_1864 nahG; NahG K14974 nicC; 6-hydroxynicotinate 3-monooxygenase [EC:1.14.13.114]
D PPUBIRD1_1863 Hypothetical protein, conserved K18028 nicX; 2,5-dihydroxypyridine 5,6-dioxygenase [EC:1.13.11.9]
D PPUBIRD1_1865 Alpha/beta fold family hydrolase K15357 nicD; N-formylmaleamate deformylase [EC:3.5.1.106]
D PPUBIRD1_1867 Isochorismatase superfamily hydrolase K13995 nicF; maleamate amidohydrolase [EC:3.5.1.107]
D PPUBIRD1_1866 Maleate cis-trans isomerase K01799 nicE; maleate isomerase [EC:5.2.1.1]
D PPUBIRD1_0236 gabD; GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PPUBIRD1_2581 Aldehyde dehydrogenase family protein K08324 sad; succinate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.24]
C 00770 Pantothenate and CoA biosynthesis [PATH:ppb00770]
D PPUBIRD1_1477 Thiamine pyrophosphate binding domain-containing protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_2415 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4166 Hypothetical protein, conserved K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4380 Acetolactate synthase isozyme 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_1200 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PPUBIRD1_4379 ilvH; IlvH K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PPUBIRD1_4378 ilvC; IlvC K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PPUBIRD1_4918 ilvD; IlvD K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PPUBIRD1_4400 panB; PanB K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D PPUBIRD1_2689 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PPUBIRD1_3361 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PPUBIRD1_4211 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PPUBIRD1_4401 panC; PanC K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D PPUBIRD1_0475 Type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D PPUBIRD1_5079 Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D PPUBIRD1_3960 mazG; MazG K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D PPUBIRD1_4913 coaD; CoaD K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D PPUBIRD1_0684 coaE; CoaE K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D PPUBIRD1_0973 Hypothetical protein, conserved K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D PPUBIRD1_2284 Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PPUBIRD1_1783 Putative oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D PPUBIRD1_1782 Dihydropyrimidine dehydrogenase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D PPUBIRD1_1784 D-hydantoinase/dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D PPUBIRD1_3138 Allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D PPUBIRD1_0665 Allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D PPUBIRD1_1786 Allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:ppb00780]
D PPUBIRD1_0402 Biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D PPUBIRD1_1677 3-oxoacyl-(acyl carrier protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PPUBIRD1_3707 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_2461 3-oxoacyl-(acyl-carrier-protein) synthase II, putative K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_2919 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_2920 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_0631 fabG; FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3709 fabG_2; FabG_2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3142 Short chain dehydrogenase/reductase family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_2441 Putative oxidoreductase, short-chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_2917 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3761 fabG_3; FabG_3 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_0764 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_4013 fabZ; FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PPUBIRD1_0401 bioH; BioH K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D PPUBIRD1_0400 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PPUBIRD1_3823 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PPUBIRD1_4771 Adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D PPUBIRD1_0403 bioD; BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D PPUBIRD1_0399 bioB; BioB K01012 bioB; biotin synthase [EC:2.8.1.6]
D PPUBIRD1_0474 birA; BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:ppb00785]
D PPUBIRD1_4584 lipB; LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D PPUBIRD1_4583 lipA; LipA K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0372 aceE; AceE K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PPUBIRD1_0603 acoC; AcoC K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PPUBIRD1_0371 aceF; AceF K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PPUBIRD1_1663 sucA; SucA K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D PPUBIRD1_1664 Dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D PPUBIRD1_1441 2-oxoisovalerate dehydrogenase subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PPUBIRD1_1440 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PPUBIRD1_1439 bkdB; BkdB K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PPUBIRD1_4987 gcvP_2; GcvP_2 K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PPUBIRD1_1038 gcvP; GcvP K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PPUBIRD1_4989 gcvT_2; GcvT_2 K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PPUBIRD1_1036 gcvT; GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PPUBIRD1_4988 Glycine cleavage system H protein 2 K02437 gcvH; glycine cleavage system H protein
D PPUBIRD1_1039 Glycine cleavage system H protein 1 K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:ppb00790]
D PPUBIRD1_3173 GTP cyclohydrolase 1 2 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D PPUBIRD1_3789 folE; FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D PPUBIRD1_2433 GTP cyclohydrolase folE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D PPUBIRD1_0430 folB; FolB K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D PPUBIRD1_4399 folK; FolK K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D PPUBIRD1_0431 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D PPUBIRD1_4419 folP; FolP K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D PPUBIRD1_4922 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PPUBIRD1_3673 folC; FolC K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D PPUBIRD1_0563 ribA; RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D PPUBIRD1_0557 ribBA; RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PPUBIRD1_1966 Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PPUBIRD1_3357 Para-aminobenzoate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D PPUBIRD1_3706 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D PPUBIRD1_4327 Short chain dehydrogenase K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3]
D PPUBIRD1_3344 6-pyruvoyl tetrahydrobiopterin synthase, putative K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PPUBIRD1_1410 phhB; PhhB K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D PPUBIRD1_1411 phhA; PhhA K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D PPUBIRD1_1263 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PPUBIRD1_1264 exsB; ExsB K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PPUBIRD1_3494 queF; QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PPUBIRD1_3700 Molybdenum cofactor synthesis domain-containing protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PPUBIRD1_1300 moaA; MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PPUBIRD1_4269 moaC; MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PPUBIRD1_4267 moaE; MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D PPUBIRD1_1298 moaB; MoaB K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D PPUBIRD1_3531 moaB_2; MoaB_2 K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D PPUBIRD1_3530 Molybdenum cofactor synthesis domain-containing protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D PPUBIRD1_1623 Hypothetical protein, conserved K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D PPUBIRD1_2335 mobA; MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:ppb00670]
D PPUBIRD1_4922 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PPUBIRD1_4327 Short chain dehydrogenase K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3]
D PPUBIRD1_3388 Bifunctional protein folD 1 K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PPUBIRD1_0711 glyA_2; GlyA_2 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PPUBIRD1_0353 glyA; GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PPUBIRD1_3953 purN; PurN K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PPUBIRD1_4605 purH; PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PPUBIRD1_0096 fmt; Fmt K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PPUBIRD1_4989 gcvT_2; GcvT_2 K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PPUBIRD1_1036 gcvT; GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PPUBIRD1_3310 metH; MetH K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PPUBIRD1_4932 thyA; ThyA K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D PPUBIRD1_4195 purU_2; PurU_2 K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D PPUBIRD1_0358 purU; PurU K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D PPUBIRD1_4762 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D PPUBIRD1_4999 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ppb00860]
D PPUBIRD1_3692 gltX; GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PPUBIRD1_0778 hemA; HemA K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D PPUBIRD1_4567 hemL; HemL K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PPUBIRD1_2821 hemB; HemB K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PPUBIRD1_0216 hemC; HemC K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D PPUBIRD1_0217 hemD; HemD K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D PPUBIRD1_4863 hemE; HemE K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D PPUBIRD1_0102 hemF; HemF K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D PPUBIRD1_1592 hemN; HemN K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D PPUBIRD1_0468 Hypothetical protein, conserved K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D PPUBIRD1_0790 hemH; HemH K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D PPUBIRD1_0218 Uroporphyrin-III C-methyltransferase, putative K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D PPUBIRD1_1815 cysG; CysG K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D PPUBIRD1_3562 Uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D PPUBIRD1_0138 Protoheme IX farnesyltransferase 1 K02257 COX10; heme o synthase [EC:2.5.1.141]
D PPUBIRD1_0860 cyoE; CyoE K02257 COX10; heme o synthase [EC:2.5.1.141]
D PPUBIRD1_0137 Cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D PPUBIRD1_4614 Precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D PPUBIRD1_4616 Precorrin-3B synthase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83]
D PPUBIRD1_4613 cobJ; CobJ K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131]
D PPUBIRD1_2378 cobM; CobM K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D PPUBIRD1_2379 Cobalamin biosynthesis protein cobE, putative K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D PPUBIRD1_1999 Precorrin 6A synthase K02228 cobF; precorrin-6A synthase [EC:2.1.1.152]
D PPUBIRD1_4619 cobK; CobK K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D PPUBIRD1_4618 cbiD; CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D PPUBIRD1_4617 cobL; CobL K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D PPUBIRD1_4615 cobH; CobH K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D PPUBIRD1_3944 cobB; CobB K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D PPUBIRD1_2289 cobN; CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D PPUBIRD1_2290 cobN_2; CobN_2 K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D PPUBIRD1_4213 ATP--cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PPUBIRD1_3945 cobO; CobO K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PPUBIRD1_3940 cobQ; CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D PPUBIRD1_3942 cobD; CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D PPUBIRD1_3941 cobC; CobC K02225 cobC1; cobalamin biosynthesis protein CobC
D PPUBIRD1_3939 cobU; CobU K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D PPUBIRD1_3936 Cobalamin synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D PPUBIRD1_3938 cobT; CobT K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D PPUBIRD1_3937 Phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D PPUBIRD1_2291 Magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D PPUBIRD1_3098 Heme oxygenase, putative K07215 pigA; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D PPUBIRD1_1055 hemO; HemO K07215 pigA; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D PPUBIRD1_4204 Pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D PPUBIRD1_1132 bfr; Bfr K03594 bfr; bacterioferritin [EC:1.16.3.1]
D PPUBIRD1_0519 Bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
D PPUBIRD1_4643 Ferritin, Dps family protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ppb00130]
D PPUBIRD1_1255 Hypothetical protein, conserved K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D PPUBIRD1_5109 Probable chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D PPUBIRD1_5110 ubiA; UbiA K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D PPUBIRD1_5009 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D PPUBIRD1_0597 ubiD; UbiD K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D PPUBIRD1_4992 ubiF; UbiF K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D PPUBIRD1_3848 ubiG; UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D PPUBIRD1_4994 ubiH; UbiH K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D PPUBIRD1_4799 ubiE; UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D PPUBIRD1_0464 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D PPUBIRD1_3259 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D PPUBIRD1_2042 Ribosyldihydronicotinamide dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D PPUBIRD1_2911 Oxidoreductase, putative K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D PPUBIRD1_3972 wrbA; WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D PPUBIRD1_2355 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ppb00900]
D PPUBIRD1_0567 dxs; Dxs K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PPUBIRD1_4018 dxr; Dxr K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D PPUBIRD1_4001 ispD; IspD K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D PPUBIRD1_0769 ipk; Ipk K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D PPUBIRD1_3997 ispF; IspF K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D PPUBIRD1_0904 ispG; IspG K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D PPUBIRD1_0657 ispH; IspH K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_0597 ubiD; UbiD K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D PPUBIRD1_0568 ispA; IspA K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D PPUBIRD1_0728 ispB; IspB K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D PPUBIRD1_4020 uppS; UppS K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:ppb00906]
D PPUBIRD1_2531 crtZ; CrtZ K15746 crtZ; beta-carotene 3-hydroxylase [EC:1.14.15.24]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:ppb00907]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3518 fadB_3; FadB_3 K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D PPUBIRD1_2254 Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D PPUBIRD1_3517 fadA; FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D PPUBIRD1_4749 tktA; TktA K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PPUBIRD1_0037 Transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PPUBIRD1_0038 Transketolase family protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ppb00523]
D PPUBIRD1_3825 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PPUBIRD1_3827 DTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PPUBIRD1_0292 DTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D PPUBIRD1_0541 DTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D PPUBIRD1_3826 DTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:ppb01053]
D PPUBIRD1_1224 4'-phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D PPUBIRD1_3484 Chorismate mutase family protein K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21]
C 01055 Biosynthesis of vancomycin group antibiotics
D PPUBIRD1_3827 DTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:ppb00946]
D PPUBIRD1_4156 Periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D PPUBIRD1_4957 Peptidase S45, penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:ppb00332]
D PPUBIRD1_0732 proB; ProB K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PPUBIRD1_4594 proA; ProA K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ppb00261]
D PPUBIRD1_1971 MbtH domain protein K05375 mbtH; MbtH protein
D PPUBIRD1_4256 cysNC; CysNC K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D PPUBIRD1_4257 cysD; CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PPUBIRD1_1430 Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PPUBIRD1_3679 asd; Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PPUBIRD1_1275 dapA_2; DapA_2 K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PPUBIRD1_3051 Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PPUBIRD1_3615 Dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PPUBIRD1_0048 dapA; DapA K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PPUBIRD1_4427 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ppb00521]
D PPUBIRD1_1061 glk; Glk K00845 glk; glucokinase [EC:2.7.1.2]
D PPUBIRD1_2214 Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PPUBIRD1_5082 Phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D PPUBIRD1_0889 suhB; SuhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PPUBIRD1_3825 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PPUBIRD1_3827 DTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PPUBIRD1_0292 DTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D PPUBIRD1_0541 DTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D PPUBIRD1_3826 DTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D PPUBIRD1_1061 glk; Glk K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:ppb00525]
D PPUBIRD1_3825 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PPUBIRD1_3827 DTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ppb00401]
D PPUBIRD1_3843 3-phosphoshikimate 1-carboxyvinyltransferase K24018 K24018; cyclohexadieny/prephenate dehydrogenase / 3-phosphoshikimate 1-carboxyvinyltransferase [EC:1.3.1.43 1.3.1.12 2.5.1.19]
D PPUBIRD1_1020 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PPUBIRD1_3696 tyrB_2; TyrB_2 K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_2203 tyrB; TyrB K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D PPUBIRD1_0455 Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PPUBIRD1_0457 trpG; TrpG K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D PPUBIRD1_3710 Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PPUBIRD1_0631 fabG; FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3709 fabG_2; FabG_2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3142 Short chain dehydrogenase/reductase family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_2441 Putative oxidoreductase, short-chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_2917 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3761 fabG_3; FabG_3 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_0764 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D PPUBIRD1_3708 acpP; AcpP K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:ppb00999]
D PPUBIRD1_4751 metK; MetK K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PPUBIRD1_0103 aroE; AroE K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D PPUBIRD1_2685 aroE_2; AroE_2 K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D PPUBIRD1_4156 Periplasmic beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
D PPUBIRD1_1611 Siderophore biosynthesis protein K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:ppb00362]
D PPUBIRD1_2572 benA; BenA K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D PPUBIRD1_2571 Benzoate 1,2-dioxygenase K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D PPUBIRD1_2570 benC; BenC K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D PPUBIRD1_2569 benD; BenD K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D PPUBIRD1_2053 catA; CatA K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D PPUBIRD1_2567 Catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D PPUBIRD1_2051 Muconate cycloisomerase 1 K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D PPUBIRD1_2052 Muconolactone Delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4]
D PPUBIRD1_4180 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D PPUBIRD1_1359 Alpha/beta hydrolase fold project K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D PPUBIRD1_0053 3-oxoacid CoA-transferase, A subunit K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D PPUBIRD1_1842 pcaI; PcaI K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D PPUBIRD1_0054 3-oxoacid CoA-transferase, B subunit K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D PPUBIRD1_1841 pcaJ; PcaJ K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D PPUBIRD1_3517 fadA; FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D PPUBIRD1_2492 phaD; PhaD K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D PPUBIRD1_4183 Beta-ketoadipyl-CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D PPUBIRD1_3025 Hydratase/decarboxylase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D PPUBIRD1_3180 dmpI; DmpI K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D PPUBIRD1_4351 pcaG; PcaG K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D PPUBIRD1_4352 pcaH; PcaH K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D PPUBIRD1_4181 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D PPUBIRD1_4179 pcaC; PcaC K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D PPUBIRD1_2138 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D PPUBIRD1_3171 Hypothetical protein, conserved K16514 galD; 4-oxalomesaconate tautomerase [EC:5.3.2.8]
D PPUBIRD1_3169 LmbE family protein K16515 galB; 4-oxalomesaconate hydratase [EC:4.2.1.83]
D PPUBIRD1_3170 Hypothetical protein, conserved K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D PPUBIRD1_2257 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D PPUBIRD1_1255 Hypothetical protein, conserved K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D PPUBIRD1_3518 fadB_3; FadB_3 K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D PPUBIRD1_0188 Acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2451 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PPUBIRD1_2490 paaC; PaaC K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PPUBIRD1_2007 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:ppb00627]
D PPUBIRD1_2723 Nitrile hydratase, alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D PPUBIRD1_2724 Nitrile hydratase K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84]
D PPUBIRD1_3049 amiE; AmiE K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2627 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2722 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2803 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_0597 ubiD; UbiD K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D PPUBIRD1_2026 Rieske (2Fe-2S) domain-containing protein K03862 vanA; vanillate monooxygenase [EC:1.14.13.82]
D PPUBIRD1_2025 Ferredoxin K03863 vanB; vanillate monooxygenase ferredoxin subunit
D PPUBIRD1_3165 Protocatechuate 4,5-dioxygenase K04099 desB; gallate dioxygenase [EC:1.13.11.57]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation [PATH:ppb00364]
D PPUBIRD1_2572 benA; BenA K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D PPUBIRD1_2571 Benzoate 1,2-dioxygenase K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D PPUBIRD1_2570 benC; BenC K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D PPUBIRD1_2569 benD; BenD K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D PPUBIRD1_2053 catA; CatA K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D PPUBIRD1_2567 Catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D PPUBIRD1_2051 Muconate cycloisomerase 1 K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D PPUBIRD1_2723 Nitrile hydratase, alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D PPUBIRD1_2724 Nitrile hydratase K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84]
C 00625 Chloroalkane and chloroalkene degradation [PATH:ppb00625]
D PPUBIRD1_1896 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PPUBIRD1_3999 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PPUBIRD1_2101 Aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PPUBIRD1_0359 Glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]
D PPUBIRD1_2997 Pyrrolo-quinoline quinone K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
D PPUBIRD1_3002 qedH; QedH K00114 exaA; alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:ppb00361]
D PPUBIRD1_2053 catA; CatA K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D PPUBIRD1_2567 Catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D PPUBIRD1_2051 Muconate cycloisomerase 1 K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
C 00623 Toluene degradation [PATH:ppb00623]
D PPUBIRD1_2053 catA; CatA K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D PPUBIRD1_2567 Catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D PPUBIRD1_2051 Muconate cycloisomerase 1 K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
C 00622 Xylene degradation [PATH:ppb00622]
D PPUBIRD1_2572 benA; BenA K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D PPUBIRD1_2571 Benzoate 1,2-dioxygenase K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D PPUBIRD1_2570 benC; BenC K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D PPUBIRD1_2569 benD; BenD K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D PPUBIRD1_3180 dmpI; DmpI K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D PPUBIRD1_3025 Hydratase/decarboxylase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00633 Nitrotoluene degradation [PATH:ppb00633]
D PPUBIRD1_3250 pnrB; PnrB K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34]
C 00642 Ethylbenzene degradation
D PPUBIRD1_3517 fadA; FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:ppb00643]
D PPUBIRD1_2327 Aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D PPUBIRD1_4316 Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D PPUBIRD1_4314 Maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D PPUBIRD1_4315 Fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D PPUBIRD1_2723 Nitrile hydratase, alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84]
D PPUBIRD1_2724 Nitrile hydratase K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84]
D PPUBIRD1_3049 amiE; AmiE K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2627 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2722 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PPUBIRD1_2803 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation [PATH:ppb00791]
D PPUBIRD1_2814 Allophanate hydrolase subunit 1 K01941 uca; urea carboxylase [EC:6.3.4.6]
D PPUBIRD1_2889 ureC; UreC K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D PPUBIRD1_2890 ureB; UreB K01429 ureB; urease subunit beta [EC:3.5.1.5]
D PPUBIRD1_2891 ureA; UreA K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:ppb00930]
D PPUBIRD1_2488 Enoyl-CoA hydratase-isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3434 fadB_2; FadB_2 K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_2450 Enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D PPUBIRD1_3518 fadB_3; FadB_3 K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:ppb00621]
D PPUBIRD1_3180 dmpI; DmpI K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D PPUBIRD1_3025 Hydratase/decarboxylase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
C 00626 Naphthalene degradation [PATH:ppb00626]
D PPUBIRD1_1896 Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PPUBIRD1_3999 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
D PPUBIRD1_4351 pcaG; PcaG K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D PPUBIRD1_4352 pcaH; PcaH K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation
D PPUBIRD1_2976 Flavin reductase domain-containing protein K16048 hsaB; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase reductase component [EC:1.5.1.-]
D PPUBIRD1_2144 Flavin reductase domain-containing protein K16048 hsaB; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase reductase component [EC:1.5.1.-]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ppb03020]
D PPUBIRD1_0484 rpoB; RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PPUBIRD1_0485 rpoC; RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PPUBIRD1_0516 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PPUBIRD1_5094 rpoZ; RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D PPUBIRD1_2895 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ppb03010]
D PPUBIRD1_3841 rpsA; RpsA K02945 RP-S1; small subunit ribosomal protein S1
D PPUBIRD1_4024 rpsB; RpsB K02967 RP-S2; small subunit ribosomal protein S2
D PPUBIRD1_0497 rpsC; RpsC K02982 RP-S3; small subunit ribosomal protein S3
D PPUBIRD1_0515 rpsD; RpsD K02986 RP-S4; small subunit ribosomal protein S4
D PPUBIRD1_0508 rpsE; RpsE K02988 RP-S5; small subunit ribosomal protein S5
D PPUBIRD1_4667 rpsF; RpsF K02990 RP-S6; small subunit ribosomal protein S6
D PPUBIRD1_0487 rpsG; RpsG K02992 RP-S7; small subunit ribosomal protein S7
D PPUBIRD1_0505 rpsH; RpsH K02994 RP-S8; small subunit ribosomal protein S8
D PPUBIRD1_4246 rpsI; RpsI K02996 RP-S9; small subunit ribosomal protein S9
D PPUBIRD1_0490 rpsJ; RpsJ K02946 RP-S10; small subunit ribosomal protein S10
D PPUBIRD1_0514 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PPUBIRD1_0486 rpsL; RpsL K02950 RP-S12; small subunit ribosomal protein S12
D PPUBIRD1_0513 rpsM; RpsM K02952 RP-S13; small subunit ribosomal protein S13
D PPUBIRD1_0504 rpsN; RpsN K02954 RP-S14; small subunit ribosomal protein S14
D PPUBIRD1_4410 rpsO; RpsO K02956 RP-S15; small subunit ribosomal protein S15
D PPUBIRD1_4097 rpsP; RpsP K02959 RP-S16; small subunit ribosomal protein S16
D PPUBIRD1_0500 rpsQ; RpsQ K02961 RP-S17; small subunit ribosomal protein S17
D PPUBIRD1_4666 rpsR; RpsR K02963 RP-S18; small subunit ribosomal protein S18
D PPUBIRD1_0495 rpsS; RpsS K02965 RP-S19; small subunit ribosomal protein S19
D PPUBIRD1_0651 rpsT; RpsT K02968 RP-S20; small subunit ribosomal protein S20
D PPUBIRD1_0427 rpsU; RpsU K02970 RP-S21; small subunit ribosomal protein S21
D PPUBIRD1_0481 rplA; RplA K02863 RP-L1; large subunit ribosomal protein L1
D PPUBIRD1_0494 rplB; RplB K02886 RP-L2; large subunit ribosomal protein L2
D PPUBIRD1_0491 rplC; RplC K02906 RP-L3; large subunit ribosomal protein L3
D PPUBIRD1_0492 rplD; RplD K02926 RP-L4; large subunit ribosomal protein L4
D PPUBIRD1_0503 rplE; RplE K02931 RP-L5; large subunit ribosomal protein L5
D PPUBIRD1_0506 rplF; RplF K02933 RP-L6; large subunit ribosomal protein L6
D PPUBIRD1_0483 rplL; RplL K02935 RP-L7; large subunit ribosomal protein L7/L12
D PPUBIRD1_4664 rplI; RplI K02939 RP-L9; large subunit ribosomal protein L9
D PPUBIRD1_0482 rplJ; RplJ K02864 RP-L10; large subunit ribosomal protein L10
D PPUBIRD1_0480 rplK; RplK K02867 RP-L11; large subunit ribosomal protein L11
D PPUBIRD1_4247 rplM; RplM K02871 RP-L13; large subunit ribosomal protein L13
D PPUBIRD1_0501 rplN; RplN K02874 RP-L14; large subunit ribosomal protein L14
D PPUBIRD1_0510 rplO; RplO K02876 RP-L15; large subunit ribosomal protein L15
D PPUBIRD1_0498 rplP; RplP K02878 RP-L16; large subunit ribosomal protein L16
D PPUBIRD1_0517 rplQ; RplQ K02879 RP-L17; large subunit ribosomal protein L17
D PPUBIRD1_0507 rplR; RplR K02881 RP-L18; large subunit ribosomal protein L18
D PPUBIRD1_4094 rplS; RplS K02884 RP-L19; large subunit ribosomal protein L19
D PPUBIRD1_3210 rplT; RplT K02887 RP-L20; large subunit ribosomal protein L20
D PPUBIRD1_0729 rplU; RplU K02888 RP-L21; large subunit ribosomal protein L21
D PPUBIRD1_0496 rplV; RplV K02890 RP-L22; large subunit ribosomal protein L22
D PPUBIRD1_0493 rplW; RplW K02892 RP-L23; large subunit ribosomal protein L23
D PPUBIRD1_0502 rplX; RplX K02895 RP-L24; large subunit ribosomal protein L24
D PPUBIRD1_0767 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PPUBIRD1_0730 rpmA; RpmA K02899 RP-L27; large subunit ribosomal protein L27
D PPUBIRD1_5076 rpmB; RpmB K02902 RP-L28; large subunit ribosomal protein L28
D PPUBIRD1_0499 rpmC; RpmC K02904 RP-L29; large subunit ribosomal protein L29
D PPUBIRD1_0509 rpmD; RpmD K02907 RP-L30; large subunit ribosomal protein L30
D PPUBIRD1_4876 rpmE; RpmE K02909 RP-L31; large subunit ribosomal protein L31
D PPUBIRD1_3712 rpmF; RpmF K02911 RP-L32; large subunit ribosomal protein L32
D PPUBIRD1_5075 rpmG; RpmG K02913 RP-L33; large subunit ribosomal protein L33
D PPUBIRD1_0073 Structural constituent of ribosome K02914 RP-L34; large subunit ribosomal protein L34
D PPUBIRD1_3211 rpmI; RpmI K02916 RP-L35; large subunit ribosomal protein L35
D PPUBIRD1_0512 Predicted protein K02919 RP-L36; large subunit ribosomal protein L36
D PPUBIRD1_r0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0019 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0022 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0008 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0011 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0015 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0018 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0021 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0009 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0007 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0016 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0006 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0013 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0017 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ppb00970]
D PPUBIRD1_t0039 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PPUBIRD1_t0046 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PPUBIRD1_t0030 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PPUBIRD1_t0006 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PPUBIRD1_t0047 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0064 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0018 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0014 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0016 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0015 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0017 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0007 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PPUBIRD1_t0023 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PPUBIRD1_t0032 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PPUBIRD1_t0042 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PPUBIRD1_t0044 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PPUBIRD1_t0043 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PPUBIRD1_t0021 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PPUBIRD1_t0051 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PPUBIRD1_t0059 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PPUBIRD1_t0034 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PPUBIRD1_t0036 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PPUBIRD1_t0040 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PPUBIRD1_t0019 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0035 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0037 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0038 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0002 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0024 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0048 tRNA-His K14226 tRNA-His; tRNA His
D PPUBIRD1_t0050 tRNA-His K14226 tRNA-His; tRNA His
D PPUBIRD1_t0005 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PPUBIRD1_t0045 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PPUBIRD1_t0029 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PPUBIRD1_t0058 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0049 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0027 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0055 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0026 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0009 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PPUBIRD1_t0011 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PPUBIRD1_t0061 tRNA-Met K14230 tRNA-Met; tRNA Met
D PPUBIRD1_t0028 tRNA-Met K14230 tRNA-Met; tRNA Met
D PPUBIRD1_t0060 tRNA-Met K14230 tRNA-Met; tRNA Met
D PPUBIRD1_t0056 tRNA-Met K14230 tRNA-Met; tRNA Met
D PPUBIRD1_t0057 tRNA-Met K14230 tRNA-Met; tRNA Met
D PPUBIRD1_t0062 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PPUBIRD1_t0054 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PPUBIRD1_t0008 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PPUBIRD1_t0022 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PPUBIRD1_t0033 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PPUBIRD1_t0012 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PPUBIRD1_t0020 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PPUBIRD1_t0013 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PPUBIRD1_t0003 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PPUBIRD1_t0010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PPUBIRD1_t0063 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PPUBIRD1_t0004 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PPUBIRD1_t0001 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PPUBIRD1_t0031 tRNA-Val K14237 tRNA-Val; tRNA Val
D PPUBIRD1_t0041 tRNA-Val K14237 tRNA-Val; tRNA Val
D PPUBIRD1_t0052 tRNA-Val K14237 tRNA-Val; tRNA Val
D PPUBIRD1_t0053 tRNA-Val K14237 tRNA-Val; tRNA Val
D PPUBIRD1_3692 gltX; GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PPUBIRD1_0664 Putative amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PPUBIRD1_0982 gatA; GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PPUBIRD1_0981 gatB; GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PPUBIRD1_0983 gatC; GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PPUBIRD1_2832 Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PPUBIRD1_1429 alaS; AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PPUBIRD1_1250 aspS; AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PPUBIRD1_0090 glyQ; GlyQ K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PPUBIRD1_0089 glyS; GlyS K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PPUBIRD1_3213 thrS; ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PPUBIRD1_1814 serS; SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PPUBIRD1_0532 selA; SelA K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D PPUBIRD1_2831 cysS; CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PPUBIRD1_1147 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PPUBIRD1_0096 fmt; Fmt K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PPUBIRD1_1028 valS; ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PPUBIRD1_4577 leuS; LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PPUBIRD1_0654 ileS; IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PPUBIRD1_4063 lysS; LysS K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PPUBIRD1_4878 argS; ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PPUBIRD1_1241 proS; ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PPUBIRD1_0905 hisS; HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PPUBIRD1_3209 pheS; PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PPUBIRD1_3208 pheT; PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PPUBIRD1_0473 tyrS; TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PPUBIRD1_4251 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ppb03060]
D PPUBIRD1_0511 secY; SecY K03076 secY; preprotein translocase subunit SecY
D PPUBIRD1_0478 secE; SecE K03073 secE; preprotein translocase subunit SecE
D PPUBIRD1_0886 secD; SecD K03072 secD; preprotein translocase subunit SecD
D PPUBIRD1_0887 secF; SecF K03074 secF; preprotein translocase subunit SecF
D PPUBIRD1_0885 yajC; YajC K03210 yajC; preprotein translocase subunit YajC
D PPUBIRD1_0071 oxaA; OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PPUBIRD1_4217 secA_2; SecA_2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PPUBIRD1_4841 secB; SecB K03071 secB; preprotein translocase subunit SecB
D PPUBIRD1_4098 ffh; Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PPUBIRD1_4900 Signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PPUBIRD1_4804 tatA_2; TatA_2 K03116 tatA; sec-independent protein translocase protein TatA
D PPUBIRD1_1091 tatA; TatA K03116 tatA; sec-independent protein translocase protein TatA
D PPUBIRD1_4805 tatB; TatB K03117 tatB; sec-independent protein translocase protein TatB
D PPUBIRD1_1090 Twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D PPUBIRD1_4806 tatC; TatC K03118 tatC; sec-independent protein translocase protein TatC
D PPUBIRD1_1089 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D PPUBIRD1_4124 lepB; LepB K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PPUBIRD1_0655 lspA; LspA K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ppb04122]
D PPUBIRD1_3247 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PPUBIRD1_0893 iscS; IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PPUBIRD1_4694 rhdA; RhdA K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PPUBIRD1_4908 Rhodanese domain-containing protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PPUBIRD1_3537 TusA-like sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PPUBIRD1_1271 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PPUBIRD1_1819 Hypothetical protein, conserved K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D PPUBIRD1_1820 Sulfur relay protein TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D PPUBIRD1_1821 Sulfur transfer complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D PPUBIRD1_1818 Hypothetical protein, conserved K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D PPUBIRD1_1800 mnmA; MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PPUBIRD1_4267 moaE; MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D PPUBIRD1_3700 Molybdenum cofactor synthesis domain-containing protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PPUBIRD1_1300 moaA; MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PPUBIRD1_4268 moaD; MoaD K03636 moaD; sulfur-carrier protein
D PPUBIRD1_0781 Molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D PPUBIRD1_4269 moaC; MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PPUBIRD1_1298 moaB; MoaB K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D PPUBIRD1_3531 moaB_2; MoaB_2 K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75]
D PPUBIRD1_4834 thiI; ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PPUBIRD1_4894 Sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:ppb03018]
D PPUBIRD1_4937 nudH; NudH K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D PPUBIRD1_3719 Ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D PPUBIRD1_4266 rhlB; RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D PPUBIRD1_4003 eno; Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PPUBIRD1_4409 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PPUBIRD1_4766 DEAD-box ATP dependent DNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D PPUBIRD1_4522 DEAD/DEAH box helicase domain-containing protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D PPUBIRD1_4669 Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PPUBIRD1_3747 DEAD-box ATP dependent DNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PPUBIRD1_1384 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D PPUBIRD1_5010 rho; Rho K03628 rho; transcription termination factor Rho
D PPUBIRD1_4429 dnaK; DnaK K04043 dnaK; molecular chaperone DnaK
D PPUBIRD1_4201 groEL; GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PPUBIRD1_4681 hfq; Hfq K03666 hfq; host factor-I protein
D PPUBIRD1_5013 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PPUBIRD1_0755 Hypothetical protein, conserved K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D PPUBIRD1_4398 pcnB; PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ppb03030]
D PPUBIRD1_4524 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_0389 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_1708 dnaQ; DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_4009 dnaE; DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PPUBIRD1_1587 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PPUBIRD1_3703 holB; HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PPUBIRD1_4579 holA; HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PPUBIRD1_1030 holC; HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PPUBIRD1_0075 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PPUBIRD1_4663 dnaB; DnaB K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PPUBIRD1_0426 dnaG_2; DnaG_2 K02316 dnaG; DNA primase [EC:2.7.7.101]
D PPUBIRD1_0522 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_2786 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_1707 rnhA; RnhA K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PPUBIRD1_4010 rnhB; RnhB K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PPUBIRD1_0151 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PPUBIRD1_4752 ligB; LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PPUBIRD1_1581 ligA; LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ppb03410]
D PPUBIRD1_1142 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PPUBIRD1_4144 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D PPUBIRD1_0315 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PPUBIRD1_4595 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D PPUBIRD1_4915 mutM; MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PPUBIRD1_0747 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D PPUBIRD1_0091 tag; Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D PPUBIRD1_5085 crc; Crc K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PPUBIRD1_2845 Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PPUBIRD1_2965 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PPUBIRD1_0151 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PPUBIRD1_4082 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PPUBIRD1_4752 ligB; LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PPUBIRD1_1581 ligA; LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ppb03420]
D PPUBIRD1_3506 mfd; Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PPUBIRD1_0520 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A
D PPUBIRD1_2630 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D PPUBIRD1_3695 uvrB; UvrB K03702 uvrB; excinuclease ABC subunit B
D PPUBIRD1_1752 uvrC; UvrC K03703 uvrC; excinuclease ABC subunit C
D PPUBIRD1_0021 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PPUBIRD1_0151 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PPUBIRD1_4752 ligB; LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PPUBIRD1_1581 ligA; LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PPUBIRD1_2895 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03430 Mismatch repair [PATH:ppb03430]
D PPUBIRD1_3990 mutS; MutS K03555 mutS; DNA mismatch repair protein MutS
D PPUBIRD1_4683 mutL; MutL K03572 mutL; DNA mismatch repair protein MutL
D PPUBIRD1_0021 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PPUBIRD1_4197 sbcB; SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D PPUBIRD1_1077 xseA; XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D PPUBIRD1_0569 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D PPUBIRD1_4082 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PPUBIRD1_0522 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_2786 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_4009 dnaE; DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PPUBIRD1_0075 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PPUBIRD1_1587 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PPUBIRD1_4579 holA; HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PPUBIRD1_3703 holB; HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PPUBIRD1_4524 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_0389 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_1708 dnaQ; DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_1030 holC; HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PPUBIRD1_4752 ligB; LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PPUBIRD1_1581 ligA; LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PPUBIRD1_2746 Prophage PSPPH02, adenine modification methytransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:ppb03440]
D PPUBIRD1_4082 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PPUBIRD1_0522 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_2786 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_0076 recF; RecF K03629 recF; DNA replication and repair protein RecF
D PPUBIRD1_4121 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D PPUBIRD1_1589 recR; RecR K06187 recR; recombination protein RecR
D PPUBIRD1_3987 recA; RecA K03553 recA; recombination protein RecA
D PPUBIRD1_0151 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PPUBIRD1_1253 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PPUBIRD1_1254 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PPUBIRD1_1252 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PPUBIRD1_5103 recG; RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PPUBIRD1_4373 recB; RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PPUBIRD1_4374 recC; RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PPUBIRD1_4371 recD; RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PPUBIRD1_4009 dnaE; DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PPUBIRD1_0075 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PPUBIRD1_1587 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PPUBIRD1_4579 holA; HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PPUBIRD1_3703 holB; HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PPUBIRD1_4524 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_0389 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_1708 dnaQ; DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_1030 holC; HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PPUBIRD1_4877 priA; PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:ppb03450]
D PPUBIRD1_2520 Ku family containing protein K10979 ku; DNA end-binding protein Ku
D PPUBIRD1_2515 ligD; LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:ppb03250]
D PPUBIRD1_1358 ppiA; PpiA K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ppb02010]
D PPUBIRD1_1552 Sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D PPUBIRD1_4965 Sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D PPUBIRD1_4963 cysT; CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D PPUBIRD1_4962 cysW; CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D PPUBIRD1_4961 cysA; CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D PPUBIRD1_0259 tauA; TauA K15551 tauA; taurine transport system substrate-binding protein
D PPUBIRD1_0257 tauC; TauC K15552 tauC; taurine transport system permease protein
D PPUBIRD1_0258 tauB; TauB K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D PPUBIRD1_0263 ssuA; SsuA K15553 ssuA; sulfonate transport system substrate-binding protein
D PPUBIRD1_2266 Aliphatic sulfonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D PPUBIRD1_0265 ssuC; SsuC K15554 ssuC; sulfonate transport system permease protein
D PPUBIRD1_0266 ssuB; SsuB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PPUBIRD1_1952 modA; ModA K02020 modA; molybdate transport system substrate-binding protein
D PPUBIRD1_1951 modB; ModB K02018 modB; molybdate transport system permease protein
D PPUBIRD1_1950 modC; ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D PPUBIRD1_4671 Iron ABC transporter, periplasmic iron-binding protein, putative K02012 afuA; iron(III) transport system substrate-binding protein
D PPUBIRD1_4991 Iron ABC transporter, periplasmic iron-binding protein, putative K02012 afuA; iron(III) transport system substrate-binding protein
D PPUBIRD1_4925 ABC transporter, periplasmic binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D PPUBIRD1_4672 Binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D PPUBIRD1_4990 Binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D PPUBIRD1_4926 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D PPUBIRD1_1128 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D PPUBIRD1_4927 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D PPUBIRD1_4975 potF; PotF K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_4976 potF_2; PotF_2 K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_2585 Periplasmic polyamine-binding protein, putative K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_3456 Periplasmic polyamine-binding protein, putative K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_2043 Periplasmic polyamine-binding protein, putative K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_0011 ABC transporter, periplasmic polyamine-binding protein, putative K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_0924 Extracellular solute-binding protein K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_4972 potI; PotI K11074 potI; putrescine transport system permease protein
D PPUBIRD1_4973 potH; PotH K11075 potH; putrescine transport system permease protein
D PPUBIRD1_4974 potG; PotG K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D PPUBIRD1_0105 Glycine betaine-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PPUBIRD1_3876 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PPUBIRD1_0325 Glycine betaine/L-proline ABC transporter, periplasmic binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PPUBIRD1_2236 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PPUBIRD1_0333 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PPUBIRD1_0324 Glycine betaine/L-proline ABC transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein
D PPUBIRD1_2235 Binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein
D PPUBIRD1_0323 Glycine betaine/L-proline ABC transporter, ATP-binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D PPUBIRD1_0921 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D PPUBIRD1_0920 Binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D PPUBIRD1_0922 Binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D PPUBIRD1_0919 Glycine betaine/L-proline ABC transporter, ATPase subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D PPUBIRD1_2470 malK; MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D PPUBIRD1_1068 Sugar ABC transporter, ATP-binding subunit K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D PPUBIRD1_2473 Sugar ABC transporter, periplasmic sugar-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein
D PPUBIRD1_2472 Sugar ABC transporter, permease protein K10237 thuF; trehalose/maltose transport system permease protein
D PPUBIRD1_2471 Sugar ABC transporter, permease protein K10238 thuG; trehalose/maltose transport system permease protein
D PPUBIRD1_1014 ttg2D; Ttg2D K07323 mlaC; phospholipid transport system substrate-binding protein
D PPUBIRD1_1013 ttg2C; Ttg2C K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PPUBIRD1_0169 Hypothetical protein, conserved K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PPUBIRD1_1012 Hypothetical protein, conserved K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PPUBIRD1_0171 Hypothetical protein, conserved K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PPUBIRD1_1015 ttg2E; Ttg2E K07122 mlaB; phospholipid transport system transporter-binding protein
D PPUBIRD1_1011 ttg2A; Ttg2A K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PPUBIRD1_0170 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PPUBIRD1_1065 Sugar ABC transporter, periplasmic sugar-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D PPUBIRD1_1066 Binding-protein-dependent transport systems inner membrane component K17316 gtsB; glucose/mannose transport system permease protein
D PPUBIRD1_1067 Binding-protein-dependent transport systems inner membrane component K17317 gtsC; glucose/mannose transport system permease protein
D PPUBIRD1_3224 rbsB; RbsB K10439 rbsB; ribose transport system substrate-binding protein
D PPUBIRD1_3222 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D PPUBIRD1_3223 ABC transporter related protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D PPUBIRD1_3219 D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D PPUBIRD1_3389 Extracellular solute-binding protein, family 1 K17321 glpV; glycerol transport system substrate-binding protein
D PPUBIRD1_3392 Binding-protein-dependent transport systems inner membrane component K17322 glpP; glycerol transport system permease protein
D PPUBIRD1_3391 Binding-protein-dependent transport systems inner membrane component K17323 glpQ; glycerol transport system permease protein
D PPUBIRD1_3394 Sugar ABC transporter, ATP-binding protein K17324 glpS; glycerol transport system ATP-binding protein
D PPUBIRD1_3393 Sugar ABC transporter, ATP-binding protein K17325 glpT; glycerol transport system ATP-binding protein
D PPUBIRD1_5121 Phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D PPUBIRD1_3020 Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D PPUBIRD1_1961 OmpA/MotB domain protein K02040 pstS; phosphate transport system substrate-binding protein
D PPUBIRD1_5120 Binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein
D PPUBIRD1_3019 Phosphate ABC transporter inner membrane protein K02037 pstC; phosphate transport system permease protein
D PPUBIRD1_5119 pstA; PstA K02038 pstA; phosphate transport system permease protein
D PPUBIRD1_3018 Phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D PPUBIRD1_5118 pstB; PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PPUBIRD1_3017 Phosphate import ATP-binding protein pstB 1 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PPUBIRD1_0873 Phosphonate ABC transporter periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D PPUBIRD1_0875 Phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D PPUBIRD1_0876 Phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D PPUBIRD1_0874 Phosphonates import ATP-binding protein phnC K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D PPUBIRD1_1121 Extracellular solute-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D PPUBIRD1_1119 Polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D PPUBIRD1_1120 Polar amino acid ABC transporter inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D PPUBIRD1_1118 ABC transporter related protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_4263 aapJ; AapJ K09969 aapJ; general L-amino acid transport system substrate-binding protein
D PPUBIRD1_4262 aapQ; AapQ K09970 aapQ; general L-amino acid transport system permease protein
D PPUBIRD1_4261 aapM; AapM K09971 aapM; general L-amino acid transport system permease protein
D PPUBIRD1_4260 aapP; AapP K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_0251 Cystine transporter subunit K02424 tcyA; L-cystine transport system substrate-binding protein
D PPUBIRD1_4948 Hypothetical protein, conserved K02424 tcyA; L-cystine transport system substrate-binding protein
D PPUBIRD1_0250 Polar amino acid ABC transporter inner membrane subunit K10009 tcyB; L-cystine transport system permease protein
D PPUBIRD1_0249 Putative amino-acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_1415 Cationic amino acid ABC transporter, periplasmic binding protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D PPUBIRD1_1417 Polar amino acid ABC transporter inner membrane subunit K10023 aotM; arginine/ornithine transport system permease protein
D PPUBIRD1_1416 Polar amino acid ABC transporter inner membrane subunit K10024 aotQ; arginine/ornithine transport system permease protein
D PPUBIRD1_1418 Basic amino acid ABC transporter, ATP-binding protein K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_0308 Amino acid ABC transporter, periplasmic amino acid-binding protein K23055 K23055; putative lysine/arginine/ornithine/histidine/octopine transport system substrate-binding protein
D PPUBIRD1_0307 Polar amino acid ABC transporter, inner membrane subunit K23056 K23056; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein
D PPUBIRD1_0306 Polar amino acid ABC transporter, inner membrane subunit K23057 K23057; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein
D PPUBIRD1_0309 ABC transporter related protein K23058 K23058; putative lysine/arginine/ornithine/histidine/octopine transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_3047 ABC-type branched-chain amino acid transport systems periplasmic component-like protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_0670 Branched chain amino acid ABC transporter amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_1185 braC; BraC K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_4654 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_0669 Inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D PPUBIRD1_1184 Inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D PPUBIRD1_4653 Inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D PPUBIRD1_0668 Inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D PPUBIRD1_1183 livM; LivM K01998 livM; branched-chain amino acid transport system permease protein
D PPUBIRD1_4652 Inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D PPUBIRD1_0667 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_1182 livG; LivG K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_4651 Branched chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_0666 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_1181 braG; BraG K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_4650 Branched chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_4958 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D PPUBIRD1_0244 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D PPUBIRD1_0140 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D PPUBIRD1_0242 Binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D PPUBIRD1_0141 ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein
D PPUBIRD1_0243 metN2; MetN2 K02071 metN; D-methionine transport system ATP-binding protein
D PPUBIRD1_0142 metN1; MetN1 K02071 metN; D-methionine transport system ATP-binding protein
D PPUBIRD1_4628 Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative K11959 urtA; urea transport system substrate-binding protein
D PPUBIRD1_4629 Inner-membrane translocator K11960 urtB; urea transport system permease protein
D PPUBIRD1_4630 Branched-chain amino acid ABC transporter, permease protein, putative K11961 urtC; urea transport system permease protein
D PPUBIRD1_4631 ABC transporter related protein K11962 urtD; urea transport system ATP-binding protein
D PPUBIRD1_4632 ABC transporter related protein K11963 urtE; urea transport system ATP-binding protein
D PPUBIRD1_0935 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_0936 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_0933 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_5077 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_0932 dppB; DppB K12369 dppB; dipeptide transport system permease protein
D PPUBIRD1_0931 Binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein
D PPUBIRD1_0930 Oligopeptide/dipeptide ABC transporter, ATPase subunit K12371 dppD; dipeptide transport system ATP-binding protein
D PPUBIRD1_0929 dppF; DppF K12372 dppF; dipeptide transport system ATP-binding protein
D PPUBIRD1_1702 Peptide ABC transporter, periplasmic peptide-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D PPUBIRD1_1703 Peptide ABC transporter, periplasmic peptide-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D PPUBIRD1_2642 Extracellular solute-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D PPUBIRD1_1701 Binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein
D PPUBIRD1_2643 Binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein
D PPUBIRD1_1700 Binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D PPUBIRD1_2644 Binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D PPUBIRD1_1699 ABC transporter related protein K13896 yejF; microcin C transport system ATP-binding protein
D PPUBIRD1_0565 Periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D PPUBIRD1_1980 Periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D PPUBIRD1_0148 Periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D PPUBIRD1_1978 Hypothetical protein, conserved K09816 znuB; zinc transport system permease protein
D PPUBIRD1_0145 znuB; ZnuB K09816 znuB; zinc transport system permease protein
D PPUBIRD1_1979 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D PPUBIRD1_0146 znuC; ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D PPUBIRD1_3805 Lipopolysaccharide biosynthesis protein K10107 kpsE; capsular polysaccharide transport system permease protein
D PPUBIRD1_3804 ABC transporter related protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D PPUBIRD1_3498 LolC/E family lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D PPUBIRD1_3500 lolC; LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D PPUBIRD1_3499 lolD; LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D PPUBIRD1_1527 ccmD; CcmD K02196 ccmD; heme exporter protein D
D PPUBIRD1_1526 ccmC; CcmC K02195 ccmC; heme exporter protein C
D PPUBIRD1_1525 ccmB; CcmB K02194 ccmB; heme exporter protein B
D PPUBIRD1_1524 Cytochrome c biogenesis ATP-binding export protein ccmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D PPUBIRD1_1032 Permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D PPUBIRD1_1033 Permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D PPUBIRD1_1006 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D PPUBIRD1_4898 Hypothetical protein, conserved K09811 ftsX; cell division transport system permease protein
D PPUBIRD1_4899 ftsE; FtsE K09812 ftsE; cell division transport system ATP-binding protein
D PPUBIRD1_3084 ABC transporter, permease/ATP-binding protein, putative K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D PPUBIRD1_3085 ABC transporter, permease/ATP-binding protein, putative K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D PPUBIRD1_4718 Lipid A export ATP-binding/permease protein msbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D PPUBIRD1_1357 ABC transporter related protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D PPUBIRD1_3062 ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D PPUBIRD1_0850 ABC transporter related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D PPUBIRD1_0197 Toxin secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D PPUBIRD1_1640 Macrolide export ATP-binding/permease protein macB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D PPUBIRD1_1634 pvdE; PvdE K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D PPUBIRD1_3413 ABC transporter K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:ppb02060]
D PPUBIRD1_0838 fruB; FruB K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D PPUBIRD1_0840 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D PPUBIRD1_0839 fruK; FruK K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D PPUBIRD1_4936 ptsP; PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D PPUBIRD1_1001 ptsO; PtsO K08485 ptsO; phosphocarrier protein NPr
D PPUBIRD1_1003 ptsN; PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:ppb03070]
D PPUBIRD1_4710 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D PPUBIRD1_1096 General secretion pathway protein D K02453 gspD; general secretion pathway protein D
D PPUBIRD1_2315 Type II and III secretion system protein K02453 gspD; general secretion pathway protein D
D PPUBIRD1_1095 xcpP; XcpP K02452 gspC; general secretion pathway protein C
D PPUBIRD1_2364 Type II secretion system protein K02455 gspF; general secretion pathway protein F
D PPUBIRD1_1098 xcpS; XcpS K02455 gspF; general secretion pathway protein F
D PPUBIRD1_2365 xcpT; XcpT K02456 gspG; general secretion pathway protein G
D PPUBIRD1_1099 General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D PPUBIRD1_2316 Type II secretory pathway pseudopilin PulG-like protein K02456 gspG; general secretion pathway protein G
D PPUBIRD1_2317 Type II secretion system protein G K02456 gspG; general secretion pathway protein G
D PPUBIRD1_1100 General secretion pathway protein H K02457 gspH; general secretion pathway protein H
D PPUBIRD1_1101 xcpV; XcpV K02458 gspI; general secretion pathway protein I
D PPUBIRD1_1102 Hypothetical protein, conserved K02459 gspJ; general secretion pathway protein J
D PPUBIRD1_1092 General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D PPUBIRD1_1103 xcpY; XcpY K02461 gspL; general secretion pathway protein L
D PPUBIRD1_4985 Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PPUBIRD1_1097 Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PPUBIRD1_2310 Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PPUBIRD1_0886 secD; SecD K03072 secD; preprotein translocase subunit SecD
D PPUBIRD1_0887 secF; SecF K03074 secF; preprotein translocase subunit SecF
D PPUBIRD1_0478 secE; SecE K03073 secE; preprotein translocase subunit SecE
D PPUBIRD1_0511 secY; SecY K03076 secY; preprotein translocase subunit SecY
D PPUBIRD1_0885 yajC; YajC K03210 yajC; preprotein translocase subunit YajC
D PPUBIRD1_0071 oxaA; OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PPUBIRD1_4217 secA_2; SecA_2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PPUBIRD1_4900 Signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PPUBIRD1_4841 secB; SecB K03071 secB; preprotein translocase subunit SecB
D PPUBIRD1_4098 ffh; Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PPUBIRD1_4804 tatA_2; TatA_2 K03116 tatA; sec-independent protein translocase protein TatA
D PPUBIRD1_1091 tatA; TatA K03116 tatA; sec-independent protein translocase protein TatA
D PPUBIRD1_4805 tatB; TatB K03117 tatB; sec-independent protein translocase protein TatB
D PPUBIRD1_1090 Twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D PPUBIRD1_4806 tatC; TatC K03118 tatC; sec-independent protein translocase protein TatC
D PPUBIRD1_1089 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D PPUBIRD1_4110 Filamentous hemagglutinin outer membrane protein K11016 shlA; hemolysin
D PPUBIRD1_3063 ImcF domain-containing protein K11891 impL; type VI secretion system protein ImpL
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ppb02020]
D PPUBIRD1_5113 Phosphate regulon sensor protein phoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PPUBIRD1_5112 phoB; PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D PPUBIRD1_5121 Phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D PPUBIRD1_3020 Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D PPUBIRD1_1961 OmpA/MotB domain protein K02040 pstS; phosphate transport system substrate-binding protein
D PPUBIRD1_1228 phoQ; PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D PPUBIRD1_1227 Two component transcriptional regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D PPUBIRD1_0274 envZ; EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D PPUBIRD1_0273 ompR; OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D PPUBIRD1_1396 Winged helix family two component transcriptional regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D PPUBIRD1_1223 Integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D PPUBIRD1_1222 Two component transcriptional regulator K07661 rstA; two-component system, OmpR family, response regulator RstA
D PPUBIRD1_4126 algY; AlgY K04771 degP; serine protease Do [EC:3.4.21.107]
D PPUBIRD1_0365 Sensory histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D PPUBIRD1_0364 DNA-binding response regulator CreB K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D PPUBIRD1_2207 Efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_2208 Multidrug resistance protein mdtB K07788 mdtB; multidrug efflux pump
D PPUBIRD1_2209 Multidrug resistance protein mdtC K07789 mdtC; multidrug efflux pump
D PPUBIRD1_3497 Heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D PPUBIRD1_3496 Two component heavy metal response transcriptional regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D PPUBIRD1_2958 Sensor histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D PPUBIRD1_1625 Integral membrane sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D PPUBIRD1_2959 DNA-binding response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB
D PPUBIRD1_1624 Winged helix family two component transcriptional regulator K07666 qseB; two-component system, OmpR family, response regulator QseB
D PPUBIRD1_1465 Flagellin K02406 fliC; flagellin
D PPUBIRD1_1510 fliA; FliA K02405 fliA; RNA polymerase sigma factor FliA
D PPUBIRD1_4692 Flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D PPUBIRD1_1515 motC; MotC K02556 motA; chemotaxis protein MotA
D PPUBIRD1_1694 kdpD; KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D PPUBIRD1_1695 Two component transcriptional regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D PPUBIRD1_1690 kdpA; KdpA K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D PPUBIRD1_1692 Potassium-transporting ATPase B chain K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D PPUBIRD1_1693 kdpC; KdpC K01548 kdpC; potassium-transporting ATPase KdpC subunit
D PPUBIRD1_4136 Integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D PPUBIRD1_4137 tctD; TctD K07774 tctD; two-component system, OmpR family, response regulator TctD
D PPUBIRD1_4141 Hypothetical protein, conserved K07793 tctA; putative tricarboxylic transport membrane protein
D PPUBIRD1_4140 Tricarboxylate transport protein TctB, putative K07794 tctB; putative tricarboxylic transport membrane protein
D PPUBIRD1_4139 Hypothetical protein, conserved K07795 tctC; putative tricarboxylic transport membrane protein
D PPUBIRD1_0137 Cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D PPUBIRD1_0074 dnaA; DnaA K02313 dnaA; chromosomal replication initiator protein
D PPUBIRD1_1238 Hypothetical protein, conserved K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D PPUBIRD1_1242 oprD; OprD K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D PPUBIRD1_5044 Porin, putative K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D PPUBIRD1_0573 pfeS; PfeS K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3]
D PPUBIRD1_3964 Integral membrane sensor signal transduction histidine kinase K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3]
D PPUBIRD1_3965 Two component transcriptional regulator K19610 pfeR; two-component system, OmpR family, response regulator PfeR
D PPUBIRD1_0574 Two component transcriptional regulator K19610 pfeR; two-component system, OmpR family, response regulator PfeR
D PPUBIRD1_3412 fepA; FepA K19611 fepA; ferric enterobactin receptor
D PPUBIRD1_0215 pprA; PprA K08083 algR; two-component system, LytTR family, response regulator AlgR
D PPUBIRD1_4273 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132]
D PPUBIRD1_3005 Integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D PPUBIRD1_3658 Histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PPUBIRD1_3660 Multi-sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PPUBIRD1_3661 Two component LuxR family transcriptional regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D PPUBIRD1_3966 gacS; GacS K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D PPUBIRD1_1751 gacA; GacA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D PPUBIRD1_3004 Two component LuxR family transcriptional regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D PPUBIRD1_3867 Carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D PPUBIRD1_1431 csrA; CsrA K03563 csrA; carbon storage regulator
D PPUBIRD1_1948 CsrA-like carbon storage regulator K03563 csrA; carbon storage regulator
D PPUBIRD1_2376 Hpt sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D PPUBIRD1_3552 Virulence sensor protein bvgS K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D PPUBIRD1_2377 LuxR family DNA-binding response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D PPUBIRD1_3551 Two component LuxR family transcriptional regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D PPUBIRD1_1140 Two component LuxR family transcriptional regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D PPUBIRD1_2858 ampC; AmpC K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D PPUBIRD1_0624 LuxR family DNA-binding response regulator K27077 pprB; two-component system, NarL family, response regulator PprB
D PPUBIRD1_3324 csuE; CsuE K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3327 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3328 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3329 Spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3330 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3326 csuC; CsuC K07346 fimC; fimbrial chaperone protein
D PPUBIRD1_3325 csuD; CsuD K07347 fimD; outer membrane usher protein
D PPUBIRD1_3664 Fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D PPUBIRD1_4026 glnD; GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D PPUBIRD1_4837 ntrB; NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PPUBIRD1_4838 ntrC; NtrC K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D PPUBIRD1_1443 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4978 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4979 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_5092 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_2584 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_3473 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_1351 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4835 glnA; GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4397 Putative two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D PPUBIRD1_2611 Short chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4157 Integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D PPUBIRD1_0291 Integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D PPUBIRD1_4158 Two component, sigma54 specific, Fis family transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D PPUBIRD1_0290 Two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D PPUBIRD1_3399 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D PPUBIRD1_1229 dctA; DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D PPUBIRD1_3594 dctM; DctM K11103 dctA; aerobic C4-dicarboxylate transport protein
D PPUBIRD1_1005 rpoN; RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D PPUBIRD1_0687 Fimbrial protein pilin K02650 pilA; type IV pilus assembly protein PilA
D PPUBIRD1_0160 kinB; KinB K11383 kinB; two-component system, NtrC family, sensor histidine kinase KinB [EC:2.7.13.3]
D PPUBIRD1_0161 algB; AlgB K11384 algB; two-component system, NtrC family, response regulator AlgB
D PPUBIRD1_2002 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PPUBIRD1_1450 cheR; CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PPUBIRD1_0634 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2375 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4191 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3405 Methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_0824 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3533 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4354 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2874 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3793 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_0347 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_0350 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2096 Chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_1266 Methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2146 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3037 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2237 Methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4808 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4809 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_1378 Methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor
D PPUBIRD1_3397 Methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor
D PPUBIRD1_3540 Methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor
D PPUBIRD1_1518 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW
D PPUBIRD1_1519 cheW; CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PPUBIRD1_1513 cheA; CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PPUBIRD1_1511 Response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PPUBIRD1_1514 cheB; CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PPUBIRD1_2003 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PPUBIRD1_0848 cheV; CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_1449 cheV_2; CheV_2 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_3524 cheV_3; CheV_3 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_4776 Protein pilJ K02660 pilJ; twitching motility protein PilJ
D PPUBIRD1_4777 Putative CheW protein K02659 pilI; twitching motility protein PilI
D PPUBIRD1_4775 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D PPUBIRD1_4779 pilG; PilG K02657 pilG; twitching motility two-component system response regulator PilG
D PPUBIRD1_4778 Response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH
D PPUBIRD1_4774 CheW domain protein K06598 chpC; chemosensory pili system protein ChpC
D PPUBIRD1_4069 Methyltransferase, CheR-like protein K13486 wspC; chemotaxis protein methyltransferase WspC
D PPUBIRD1_4071 Methyl-accepting chemotaxis sensory transducer K13487 wspA; methyl-accepting chemotaxis protein WspA
D PPUBIRD1_4070 CheW protein K13488 wspB; chemotaxis-related protein WspB
D PPUBIRD1_4068 Putative CheW protein K13489 wspD; chemotaxis-related protein WspD
D PPUBIRD1_4067 CheA signal transduction histidine kinase K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE
D PPUBIRD1_4066 Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61]
D PPUBIRD1_4065 Response regulator/GGDEF domain-containing protein K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65]
D PPUBIRD1_3331 Multi-sensor signal transduction histidine kinase K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D PPUBIRD1_1470 fleQ; FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PPUBIRD1_1487 fleS; FleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D PPUBIRD1_1488 Two component, sigma54 specific, Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC
D PPUBIRD1_1117 Integral membrane sensor signal transduction histidine kinase K17060 aauS; two-component system, sensor histidine kinase AauS [EC:2.7.13.3]
D PPUBIRD1_1116 Two component, sigma54 specific, transcriptional regulator, Fis family K17061 aauR; two-component system, response regulator AauR
D PPUBIRD1_1118 ABC transporter related protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_1119 Polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D PPUBIRD1_1120 Polar amino acid ABC transporter inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D PPUBIRD1_1121 Extracellular solute-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D PPUBIRD1_3225 Glutaminase-asparaginase K05597 aspQ; glutamin-(asparagin-)ase [EC:3.5.1.38]
D PPUBIRD1_0461 CAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PPUBIRD1_3162 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D PPUBIRD1_0938 Integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D PPUBIRD1_0939 Two component Fis family transcriptional regulator K15012 regA; two-component system, response regulator RegA
D PPUBIRD1_4245 petA; PetA K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D PPUBIRD1_4244 Cytochrome b/b6 domain-containing protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PPUBIRD1_4243 petC; PetC K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D PPUBIRD1_1601 ccoN; CcoN K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D PPUBIRD1_1606 ccoN_2; CcoN_2 K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D PPUBIRD1_1600 ccoO; CcoO K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D PPUBIRD1_1605 ccoO_2; CcoO_2 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D PPUBIRD1_1599 ccoQ; CcoQ K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D PPUBIRD1_1604 ccoQ_2; CcoQ_2 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D PPUBIRD1_1598 ccoP; CcoP K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D PPUBIRD1_1603 ccoP_2; CcoP_2 K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D PPUBIRD1_4347 cioA; CioA K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PPUBIRD1_4346 Cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D PPUBIRD1_4710 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D PPUBIRD1_2608 Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D PPUBIRD1_3806 Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D PPUBIRD1_3721 Protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D PPUBIRD1_3800 wecB; WecB K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D PPUBIRD1_0388 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_2215 ECF subfamily RNA polymerase sigma-24 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_0192 fecI; FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_0866 ECF subfamily RNA polymerase sigma-24 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_0746 ECF subfamily RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_3578 ECF subfamily RNA polymerase sigma-24 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_0745 Anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_3261 Anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_3579 Anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_0387 Anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_0867 Anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_4302 Anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_0917 Anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_2216 Anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_2239 Anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_2696 Putative transmembrane sensor K07165 fecR; transmembrane sensor
D PPUBIRD1_0191 fecR; FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_1057 Anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor
D PPUBIRD1_3740 Histidine kinase K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3]
D PPUBIRD1_1679 Integral membrane sensor hybrid histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D PPUBIRD1_3012 PAS/PAC sensor hybrid histidine kinase K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3]
D PPUBIRD1_1497 Hpt protein K20976 hptB; histidine phosphotransfer protein HptB
D PPUBIRD1_1496 Response regulator receiver protein K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator
D PPUBIRD1_1495 Anti-sigma-factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor
D PPUBIRD1_1447 flgM; FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:ppb04148]
D PPUBIRD1_0915 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D PPUBIRD1_4245 petA; PetA K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ppb02024]
D PPUBIRD1_4681 hfq; Hfq K03666 hfq; host factor-I protein
D PPUBIRD1_0455 Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PPUBIRD1_0457 trpG; TrpG K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PPUBIRD1_3749 Phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PPUBIRD1_2640 Phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PPUBIRD1_3362 aroF; AroF K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PPUBIRD1_2958 Sensor histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D PPUBIRD1_1625 Integral membrane sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D PPUBIRD1_2959 DNA-binding response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB
D PPUBIRD1_1624 Winged helix family two component transcriptional regulator K07666 qseB; two-component system, OmpR family, response regulator QseB
D PPUBIRD1_1695 Two component transcriptional regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D PPUBIRD1_4407 Antibiotic biosynthesis monooxygenase K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D PPUBIRD1_4073 Extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D PPUBIRD1_0450 Polyamine ABC transporter, periplasmic polyamine-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D PPUBIRD1_2865 Spermidine/putrescine-binding periplasmic protein-like protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D PPUBIRD1_3891 ABC-type Fe3+ transport system periplasmic component-like protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D PPUBIRD1_1965 Extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D PPUBIRD1_4076 Binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_3894 Binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_0452 Binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_1963 Binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_4075 Binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_0451 Binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_3893 Binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_1964 Binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_4074 Spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D PPUBIRD1_3895 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D PPUBIRD1_1962 Polyamine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D PPUBIRD1_0449 Spermidine/putrescine ABC transporter ATPase K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D PPUBIRD1_3047 ABC-type branched-chain amino acid transport systems periplasmic component-like protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_0670 Branched chain amino acid ABC transporter amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_1185 braC; BraC K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_4654 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_0669 Inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D PPUBIRD1_1184 Inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D PPUBIRD1_4653 Inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D PPUBIRD1_0668 Inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D PPUBIRD1_1183 livM; LivM K01998 livM; branched-chain amino acid transport system permease protein
D PPUBIRD1_4652 Inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D PPUBIRD1_0667 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_1182 livG; LivG K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_4651 Branched chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_0666 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_1181 braG; BraG K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_4650 Branched chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_0852 Surface adhesion protein, putative K20276 bapA; large repetitive protein
D PPUBIRD1_1348 fadD2; FadD2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_1349 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_2090 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_0461 CAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PPUBIRD1_0147 Ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D PPUBIRD1_0563 ribA; RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D PPUBIRD1_0555 ribD; RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PPUBIRD1_2181 Hypothetical protein, conserved K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D PPUBIRD1_3589 RND family efflux transporter MFP subunit K18306 mexH; membrane fusion protein, multidrug efflux system
D PPUBIRD1_3588 Uncharacterized transporter HI0895 K18307 mexI; multidrug efflux pump
D PPUBIRD1_4176 ttgC; TtgC K18139 oprM; outer membrane protein, multidrug efflux system
D PPUBIRD1_1639 RND efflux transporter K18139 oprM; outer membrane protein, multidrug efflux system
D PPUBIRD1_1848 Extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PPUBIRD1_1850 Extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PPUBIRD1_1849 Binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PPUBIRD1_1851 Binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PPUBIRD1_1852 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PPUBIRD1_1853 ABC transporter related protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D PPUBIRD1_0071 oxaA; OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PPUBIRD1_0478 secE; SecE K03073 secE; preprotein translocase subunit SecE
D PPUBIRD1_0511 secY; SecY K03076 secY; preprotein translocase subunit SecY
D PPUBIRD1_0885 yajC; YajC K03210 yajC; preprotein translocase subunit YajC
D PPUBIRD1_4217 secA_2; SecA_2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PPUBIRD1_4900 Signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PPUBIRD1_4841 secB; SecB K03071 secB; preprotein translocase subunit SecB
D PPUBIRD1_4098 ffh; Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa [PATH:ppb02025]
D PPUBIRD1_4776 Protein pilJ K02660 pilJ; twitching motility protein PilJ
D PPUBIRD1_4777 Putative CheW protein K02659 pilI; twitching motility protein PilI
D PPUBIRD1_4775 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D PPUBIRD1_4774 CheW domain protein K06598 chpC; chemosensory pili system protein ChpC
D PPUBIRD1_4778 Response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH
D PPUBIRD1_4779 pilG; PilG K02657 pilG; twitching motility two-component system response regulator PilG
D PPUBIRD1_4704 Icc protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D PPUBIRD1_0461 CAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PPUBIRD1_1470 fleQ; FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PPUBIRD1_0455 Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PPUBIRD1_0457 trpG; TrpG K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PPUBIRD1_3966 gacS; GacS K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D PPUBIRD1_4564 Integral membrane sensor signal transduction histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS
D PPUBIRD1_4608 Integral membrane sensor hybrid histidine kinase K20972 retS; two-component system, sensor histidine kinase RetS
D PPUBIRD1_1751 gacA; GacA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D PPUBIRD1_3004 Two component LuxR family transcriptional regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D PPUBIRD1_3867 Carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D PPUBIRD1_1431 csrA; CsrA K03563 csrA; carbon storage regulator
D PPUBIRD1_1948 CsrA-like carbon storage regulator K03563 csrA; carbon storage regulator
D PPUBIRD1_3740 Histidine kinase K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3]
D PPUBIRD1_1679 Integral membrane sensor hybrid histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D PPUBIRD1_3012 PAS/PAC sensor hybrid histidine kinase K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3]
D PPUBIRD1_1497 Hpt protein K20976 hptB; histidine phosphotransfer protein HptB
D PPUBIRD1_1496 Response regulator receiver protein K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator
D PPUBIRD1_1495 Anti-sigma-factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor
D PPUBIRD1_1447 flgM; FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D PPUBIRD1_1510 fliA; FliA K02405 fliA; RNA polymerase sigma factor FliA
D PPUBIRD1_3063 ImcF domain-containing protein K11891 impL; type VI secretion system protein ImpL
D PPUBIRD1_3066 Hypothetical protein, conserved K11901 impB; type VI secretion system protein ImpB
D PPUBIRD1_3067 Hypothetical protein, conserved K11900 impC; type VI secretion system protein ImpC
D PPUBIRD1_4071 Methyl-accepting chemotaxis sensory transducer K13487 wspA; methyl-accepting chemotaxis protein WspA
D PPUBIRD1_4067 CheA signal transduction histidine kinase K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE
D PPUBIRD1_4070 CheW protein K13488 wspB; chemotaxis-related protein WspB
D PPUBIRD1_4068 Putative CheW protein K13489 wspD; chemotaxis-related protein WspD
D PPUBIRD1_4066 Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61]
D PPUBIRD1_4065 Response regulator/GGDEF domain-containing protein K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65]
D PPUBIRD1_4369 GGDEF domain-containing protein K21021 tpbB; diguanylate cyclase [EC:2.7.7.65]
D PPUBIRD1_2211 Uncharacterized signaling protein PA1727 K21023 mucR; diguanylate cyclase [EC:2.7.7.65]
D PPUBIRD1_0965 Diguanylate cyclase/phosphodiesterase K21024 bifA; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D PPUBIRD1_4284 algA; AlgA K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D PPUBIRD1_3529 Glycosyl transferase, putative K21001 pslH; polysaccharide biosynthesis protein PslH
D PPUBIRD1_4275 Alginate biosynthesis protein alg44 K19291 alg44; mannuronan synthase [EC:2.4.1.33]
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:ppb02030]
D PPUBIRD1_0634 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2375 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4191 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3405 Methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_0824 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3533 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4354 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2874 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3793 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_0347 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_0350 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2096 Chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_1266 Methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2146 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3037 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2237 Methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4808 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4809 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_1378 Methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor
D PPUBIRD1_3397 Methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor
D PPUBIRD1_3540 Methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor
D PPUBIRD1_3224 rbsB; RbsB K10439 rbsB; ribose transport system substrate-binding protein
D PPUBIRD1_0935 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_0936 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_0933 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_5077 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_1513 cheA; CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PPUBIRD1_1518 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW
D PPUBIRD1_1519 cheW; CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PPUBIRD1_1511 Response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PPUBIRD1_1512 cheZ; CheZ K03414 cheZ; chemotaxis protein CheZ
D PPUBIRD1_1514 cheB; CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PPUBIRD1_2003 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PPUBIRD1_0848 cheV; CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_1449 cheV_2; CheV_2 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_3524 cheV_3; CheV_3 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_2002 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PPUBIRD1_1450 cheR; CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PPUBIRD1_1491 fliG; FliG K02410 fliG; flagellar motor switch protein FliG
D PPUBIRD1_1500 fliM; FliM K02416 fliM; flagellar motor switch protein FliM
D PPUBIRD1_1501 fliN; FliN K02417 fliN; flagellar motor switch protein FliN
D PPUBIRD1_4692 Flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D PPUBIRD1_1515 motC; MotC K02556 motA; chemotaxis protein MotA
D PPUBIRD1_4691 motB; MotB K02557 motB; chemotaxis protein MotB
D PPUBIRD1_1516 Flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:ppb02040]
D PPUBIRD1_1489 fliE; FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D PPUBIRD1_1490 fliF; FliF K02409 fliF; flagellar M-ring protein FliF
D PPUBIRD1_1491 fliG; FliG K02410 fliG; flagellar motor switch protein FliG
D PPUBIRD1_1492 fliH; FliH K02411 fliH; flagellar assembly protein FliH
D PPUBIRD1_1493 fliI; FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D PPUBIRD1_1494 fliJ; FliJ K02413 fliJ; flagellar protein FliJ
D PPUBIRD1_1498 fliK; FliK K02414 fliK; flagellar hook-length control protein FliK
D PPUBIRD1_1499 fliL; FliL K02415 fliL; flagellar protein FliL
D PPUBIRD1_5005 Flagellar basal body-associated protein FliL-like protein K02415 fliL; flagellar protein FliL
D PPUBIRD1_1500 fliM; FliM K02416 fliM; flagellar motor switch protein FliM
D PPUBIRD1_1501 fliN; FliN K02417 fliN; flagellar motor switch protein FliN
D PPUBIRD1_1502 fliO; FliO K02418 fliO; flagellar protein FliO/FliZ
D PPUBIRD1_1503 fliP; FliP K02419 fliP; flagellar biosynthesis protein FliP
D PPUBIRD1_1504 fliQ; FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D PPUBIRD1_1505 fliR; FliR K02421 fliR; flagellar biosynthesis protein FliR
D PPUBIRD1_1507 flhA; FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D PPUBIRD1_1506 flhB; FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D PPUBIRD1_1448 flgA; FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D PPUBIRD1_1451 flgB; FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D PPUBIRD1_1452 flgC; FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D PPUBIRD1_1453 flgD; FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D PPUBIRD1_1454 flgE; FlgE K02390 flgE; flagellar hook protein FlgE
D PPUBIRD1_1456 Flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D PPUBIRD1_1457 flgG; FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D PPUBIRD1_1458 flgH; FlgH K02393 flgH; flagellar L-ring protein FlgH
D PPUBIRD1_1459 flgI; FlgI K02394 flgI; flagellar P-ring protein FlgI
D PPUBIRD1_1460 flgJ; FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D PPUBIRD1_1461 flgK; FlgK K02396 flgK; flagellar hook-associated protein 1
D PPUBIRD1_1462 flgL; FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D PPUBIRD1_1137 OmpA/MotB domain-containing protein K21218 motY; sodium-type flagellar protein MotY
D PPUBIRD1_1465 Flagellin K02406 fliC; flagellin
D PPUBIRD1_1467 Flagellar hook-associated 2 domain-containing protein K02407 fliD; flagellar hook-associated protein 2
D PPUBIRD1_1468 fliS; FliS K02422 fliS; flagellar secretion chaperone FliS
D PPUBIRD1_1469 Hypothetical protein, conserved K02423 fliT; flagellar protein FliT
D PPUBIRD1_4692 Flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D PPUBIRD1_1515 motC; MotC K02556 motA; chemotaxis protein MotA
D PPUBIRD1_4691 motB; MotB K02557 motB; chemotaxis protein MotB
D PPUBIRD1_1516 Flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D PPUBIRD1_1447 flgM; FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D PPUBIRD1_1446 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D PPUBIRD1_0251 Cystine transporter subunit K02424 tcyA; L-cystine transport system substrate-binding protein
D PPUBIRD1_4948 Hypothetical protein, conserved K02424 tcyA; L-cystine transport system substrate-binding protein
D PPUBIRD1_0424 rpoD; RpoD K03086 rpoD; RNA polymerase primary sigma factor
D PPUBIRD1_1470 fleQ; FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PPUBIRD1_1005 rpoN; RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D PPUBIRD1_1488 Two component, sigma54 specific, Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC
D PPUBIRD1_1510 fliA; FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D PPUBIRD1_4003 eno; Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:ppb04980]
D PPUBIRD1_4213 ATP--cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PPUBIRD1_3310 metH; MetH K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ppb01501]
D PPUBIRD1_1242 oprD; OprD K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D PPUBIRD1_5044 Porin, putative K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D PPUBIRD1_4207 AmpG-related permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D PPUBIRD1_3509 nagZ; NagZ K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D PPUBIRD1_2858 ampC; AmpC K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D PPUBIRD1_4174 ttgA; TtgA K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_2337 Efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_0958 RND efflux membrane fusion protein-related protein K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_4175 arpB; ArpB K18138 acrB; multidrug efflux pump
D PPUBIRD1_0957 Uncharacterized transporter HI0895 K18138 acrB; multidrug efflux pump
D PPUBIRD1_2336 Toluene efflux pump membrane transporter ttgB K18138 acrB; multidrug efflux pump
D PPUBIRD1_4176 ttgC; TtgC K18139 oprM; outer membrane protein, multidrug efflux system
D PPUBIRD1_1639 RND efflux transporter K18139 oprM; outer membrane protein, multidrug efflux system
D PPUBIRD1_4710 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D PPUBIRD1_4873 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PPUBIRD1_2021 mrdA; MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PPUBIRD1_4590 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PPUBIRD1_4232 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:ppb01502]
D PPUBIRD1_4224 ddl; Ddl K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PPUBIRD1_5063 dadX; DadX K01775 alr; alanine racemase [EC:5.1.1.1]
D PPUBIRD1_4230 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PPUBIRD1_4229 mraY; MraY K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PPUBIRD1_4226 murG; MurG K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ppb01503]
D PPUBIRD1_1228 phoQ; PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D PPUBIRD1_1227 Two component transcriptional regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D PPUBIRD1_1306 Hypothetical protein, conserved K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D PPUBIRD1_1396 Winged helix family two component transcriptional regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D PPUBIRD1_4684 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PPUBIRD1_4126 algY; AlgY K04771 degP; serine protease Do [EC:3.4.21.107]
D PPUBIRD1_0155 dsbA; DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D PPUBIRD1_1358 ppiA; PpiA K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PPUBIRD1_4174 ttgA; TtgA K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_2337 Efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_0958 RND efflux membrane fusion protein-related protein K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_4175 arpB; ArpB K18138 acrB; multidrug efflux pump
D PPUBIRD1_0957 Uncharacterized transporter HI0895 K18138 acrB; multidrug efflux pump
D PPUBIRD1_2336 Toluene efflux pump membrane transporter ttgB K18138 acrB; multidrug efflux pump
D PPUBIRD1_4710 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D PPUBIRD1_4012 lpxA; LpxA K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PPUBIRD1_1238 Hypothetical protein, conserved K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ppb01000]
C 01001 Protein kinases [BR:ppb01001]
D PPUBIRD1_2823 Hypothetical protein, conserved K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D PPUBIRD1_2605 Protein-tyrosine kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D PPUBIRD1_5113 Phosphate regulon sensor protein phoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PPUBIRD1_1228 phoQ; PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D PPUBIRD1_0274 envZ; EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D PPUBIRD1_1223 Integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D PPUBIRD1_0365 Sensory histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D PPUBIRD1_3497 Heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D PPUBIRD1_2958 Sensor histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D PPUBIRD1_1625 Integral membrane sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D PPUBIRD1_1694 kdpD; KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D PPUBIRD1_4136 Integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D PPUBIRD1_0573 pfeS; PfeS K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3]
D PPUBIRD1_3964 Integral membrane sensor signal transduction histidine kinase K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3]
D PPUBIRD1_2339 Integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PPUBIRD1_2409 Integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PPUBIRD1_3005 Integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D PPUBIRD1_3658 Histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PPUBIRD1_3660 Multi-sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PPUBIRD1_3966 gacS; GacS K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D PPUBIRD1_2376 Hpt sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D PPUBIRD1_3552 Virulence sensor protein bvgS K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D PPUBIRD1_4837 ntrB; NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PPUBIRD1_4157 Integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D PPUBIRD1_0291 Integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D PPUBIRD1_0160 kinB; KinB K11383 kinB; two-component system, NtrC family, sensor histidine kinase KinB [EC:2.7.13.3]
D PPUBIRD1_2730 Sensor histidine kinase/response regulator K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D PPUBIRD1_1513 cheA; CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PPUBIRD1_4775 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D PPUBIRD1_4067 CheA signal transduction histidine kinase K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE
D PPUBIRD1_3331 Multi-sensor signal transduction histidine kinase K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D PPUBIRD1_1487 fleS; FleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D PPUBIRD1_0938 Integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D PPUBIRD1_3740 Histidine kinase K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3]
D PPUBIRD1_1679 Integral membrane sensor hybrid histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D PPUBIRD1_3012 PAS/PAC sensor hybrid histidine kinase K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3]
D PPUBIRD1_4564 Integral membrane sensor signal transduction histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS
D PPUBIRD1_4608 Integral membrane sensor hybrid histidine kinase K20972 retS; two-component system, sensor histidine kinase RetS
C 01009 Protein phosphatases and associated proteins [BR:ppb01009]
D PPUBIRD1_4761 Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PPUBIRD1_1673 htpG; HtpG K04079 HSP90A; molecular chaperone HtpG
D PPUBIRD1_4696 serB; SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:ppb01002]
D PPUBIRD1_0655 lspA; LspA K03101 lspA; signal peptidase II [EC:3.4.23.36]
D PPUBIRD1_0685 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PPUBIRD1_0625 Hypothetical protein, conserved K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D PPUBIRD1_1082 guaA; GuaA K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PPUBIRD1_3472 Peptidase C26 K07010 K07010; putative glutamine amidotransferase
D PPUBIRD1_2194 Peptidase C26 K07010 K07010; putative glutamine amidotransferase
D PPUBIRD1_5091 Peptidase C26 K07010 K07010; putative glutamine amidotransferase
D PPUBIRD1_3670 purF; PurF K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PPUBIRD1_4865 gltB; GltB K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PPUBIRD1_0055 glmS; GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PPUBIRD1_3863 asnB; AsnB K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PPUBIRD1_0944 Intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124]
D PPUBIRD1_2949 pfpI; PfpI K05520 yhbO; deglycase [EC:3.5.1.124]
D PPUBIRD1_3365 ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D PPUBIRD1_3634 pepN; PepN K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PPUBIRD1_0124 opdA; OpdA K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D PPUBIRD1_0126 Peptidase M3A and M3B, thimet/oligopeptidase F K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D PPUBIRD1_4905 Peptidase M16 domain-containing protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D PPUBIRD1_4906 Peptidase M16 domain-containing protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D PPUBIRD1_4902 Peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D PPUBIRD1_4903 Peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D PPUBIRD1_1031 pepA; PepA K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PPUBIRD1_0338 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PPUBIRD1_1637 Dipeptidase, putative K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PPUBIRD1_2980 Peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PPUBIRD1_4035 dapE; DapE K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PPUBIRD1_2629 Amidohydrolase K01451 hipO; hippurate hydrolase [EC:3.5.1.32]
D PPUBIRD1_4025 map; Map K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PPUBIRD1_3914 Methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PPUBIRD1_4995 Peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D PPUBIRD1_3416 Peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D PPUBIRD1_4420 ftsH; FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PPUBIRD1_3744 htpX; HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D PPUBIRD1_1270 Peptidase M48 Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D PPUBIRD1_4017 Putative zinc metalloprotease PA3649 K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D PPUBIRD1_0329 Ricin B lectin K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33]
D PPUBIRD1_0588 Hypothetical protein, conserved K09933 mtfA; MtfA peptidase
D PPUBIRD1_4126 algY; AlgY K04771 degP; serine protease Do [EC:3.4.21.107]
D PPUBIRD1_4259 algW; AlgW K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D PPUBIRD1_1316 Oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D PPUBIRD1_4586 dacA; DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D PPUBIRD1_1987 pbpG; PbpG K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D PPUBIRD1_3554 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PPUBIRD1_3385 clpP; ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PPUBIRD1_2765 Peptidase S14 ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PPUBIRD1_4116 lon_2; Lon_2 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D PPUBIRD1_3383 lon; Lon K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D PPUBIRD1_2619 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D PPUBIRD1_3511 lexA; LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D PPUBIRD1_4124 lepB; LepB K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PPUBIRD1_4816 pip; Pip K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D PPUBIRD1_3898 prc; Prc K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D PPUBIRD1_4846 Carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D PPUBIRD1_4957 Peptidase S45, penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D PPUBIRD1_3715 Signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-]
D PPUBIRD1_1885 Putative periplasmic protease K04774 sohB; serine protease SohB [EC:3.4.21.-]
D PPUBIRD1_3637 Rhomboid family protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D PPUBIRD1_4582 Muramoyltetrapeptide carboxypeptidase, putative K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D PPUBIRD1_4788 ATP-dependent protease hslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D PPUBIRD1_2258 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PPUBIRD1_4355 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D PPUBIRD1_3445 Uncharacterized protease HI0419 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D PPUBIRD1_2295 Uncharacterized protease ydcP K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
D PPUBIRD1_0994 pmbA; PmbA K03592 pmbA; PmbA protein
D PPUBIRD1_0992 Peptidase U62, modulator of DNA gyrase K03568 tldD; TldD protein
D PPUBIRD1_2648 Ecotin K08276 eco; ecotin
D PPUBIRD1_0620 Uncharacterized lipoprotein yfhM K06894 yfhM; alpha-2-macroglobulin
D PPUBIRD1_4678 hflC; HflC K04087 hflC; modulator of FtsH protease HflC
D PPUBIRD1_4679 hflK; HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:ppb01003]
D PPUBIRD1_4192 Glycosyl transferase, group 1 family protein K14335 pimC; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D PPUBIRD1_1775 glgA; GlgA K00703 glgA; starch synthase [EC:2.4.1.21]
D PPUBIRD1_3056 bcsA_2; BcsA_2 K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D PPUBIRD1_4896 mtgA; MtgA K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D PPUBIRD1_0622 pbpC; PbpC K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D PPUBIRD1_4383 mrcB; MrcB K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D PPUBIRD1_4873 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PPUBIRD1_3529 Glycosyl transferase, putative K21001 pslH; polysaccharide biosynthesis protein PslH
D PPUBIRD1_4274 Glycosyltransferase alg8 K19290 alg8; mannuronan synthase [EC:2.4.1.33]
D PPUBIRD1_2591 WecB/TagA/CpsF family glycosyl transferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D PPUBIRD1_4813 Glucans biosynthesis glucosyltransferase H K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D PPUBIRD1_3043 Protein ndvB K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
D PPUBIRD1_2597 Glycosyl transferase, putative K16870 wbbL; N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase [EC:2.4.1.289]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ppb01005]
D PPUBIRD1_4012 lpxA; LpxA K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PPUBIRD1_4011 lpxB; LpxB K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D PPUBIRD1_4219 lpxC; LpxC K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D PPUBIRD1_4014 lpxD; LpxD K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D PPUBIRD1_2834 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D PPUBIRD1_3724 lpxK; LpxK K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D PPUBIRD1_0092 Lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PPUBIRD1_3882 htrB; HtrB K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D PPUBIRD1_1329 Hypothetical protein, conserved K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D PPUBIRD1_3264 Aspartyl/asparaginyl beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-]
D PPUBIRD1_4711 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D PPUBIRD1_0783 Hypothetical protein, conserved K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D PPUBIRD1_2578 Hypothetical protein, conserved K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D PPUBIRD1_1306 Hypothetical protein, conserved K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D PPUBIRD1_4004 kdsA_2; KdsA_2 K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D PPUBIRD1_3810 kdsA; KdsA K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D PPUBIRD1_3722 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D PPUBIRD1_3811 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D PPUBIRD1_1009 YrbI family phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D PPUBIRD1_1010 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PPUBIRD1_3813 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PPUBIRD1_0376 waaC; WaaC K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D PPUBIRD1_0375 waaF; WaaF K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D PPUBIRD1_0377 waaG; WaaG K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D PPUBIRD1_0378 waaP; WaaP K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235]
D PPUBIRD1_3101 Hypothetical protein, conserved K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-]
D PPUBIRD1_4239 gmhA; GmhA K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D PPUBIRD1_0088 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D PPUBIRD1_4717 Bifunctional protein hldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D PPUBIRD1_3829 wbpL; WbpL K13007 wbpL; glycosyltransferase WbpL [EC:2.4.1.-]
D PPUBIRD1_3836 Wzz K05789 wzzB; chain length determinant protein (polysaccharide antigen chain regulator)
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ppb01011]
D PPUBIRD1_1017 murA; MurA K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PPUBIRD1_3720 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PPUBIRD1_4225 murC; MurC K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PPUBIRD1_4228 murD; MurD K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PPUBIRD1_4231 murE; MurE K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PPUBIRD1_4224 ddl; Ddl K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PPUBIRD1_5063 dadX; DadX K01775 alr; alanine racemase [EC:5.1.1.1]
D PPUBIRD1_0782 Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PPUBIRD1_4582 Muramoyltetrapeptide carboxypeptidase, putative K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D PPUBIRD1_4229 mraY; MraY K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PPUBIRD1_4226 murG; MurG K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PPUBIRD1_2873 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PPUBIRD1_0652 Integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D PPUBIRD1_4873 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PPUBIRD1_4383 mrcB; MrcB K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D PPUBIRD1_0622 pbpC; PbpC K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D PPUBIRD1_2021 mrdA; MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PPUBIRD1_4590 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PPUBIRD1_4232 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PPUBIRD1_4586 dacA; DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D PPUBIRD1_3554 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PPUBIRD1_1987 pbpG; PbpG K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D PPUBIRD1_4896 mtgA; MtgA K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D PPUBIRD1_3365 ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D PPUBIRD1_3522 Lytic transglycosylase, catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D PPUBIRD1_4756 MltA domain-containing protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D PPUBIRD1_4581 Lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D PPUBIRD1_4588 mltB; MltB K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D PPUBIRD1_1704 MltD domain-containing protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D PPUBIRD1_1086 Membrane-bound lytic murein transglycosylase F K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D PPUBIRD1_3705 Aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D PPUBIRD1_0980 Rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D PPUBIRD1_4587 Rare lipoprotein A family K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D PPUBIRD1_4684 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PPUBIRD1_0158 amiD; AmiD K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PPUBIRD1_0833 ampD; AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:ppb01004]
D PPUBIRD1_3710 Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PPUBIRD1_1463 Beta-ketoacyl-acyl-carrier-protein synthase I K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PPUBIRD1_1677 3-oxoacyl-(acyl carrier protein) synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PPUBIRD1_3707 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_2461 3-oxoacyl-(acyl-carrier-protein) synthase II, putative K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_2919 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_2920 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PPUBIRD1_0631 fabG; FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3709 fabG_2; FabG_2 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3142 Short chain dehydrogenase/reductase family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_2441 Putative oxidoreductase, short-chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_2917 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_3761 fabG_3; FabG_3 K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_0764 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PPUBIRD1_1678 fabA; FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D PPUBIRD1_4013 fabZ; FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PPUBIRD1_4331 Putative reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D PPUBIRD1_3367 Arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D PPUBIRD1_4516 Acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D PPUBIRD1_5123 Thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D PPUBIRD1_0240 Fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D PPUBIRD1_3438 fadD; FadD K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_4403 Acetyl-coenzyme A synthetase 2 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_1414 Acetyl-coenzyme A synthetase 1 K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PPUBIRD1_3336 Hypothetical protein, conserved K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D PPUBIRD1_2649 Acetoacetyl-coenzyme A synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D PPUBIRD1_2038 Acyl-CoA synthetase, putative K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D PPUBIRD1_2443 pauA; PauA K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D PPUBIRD1_1348 fadD2; FadD2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_1349 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_2090 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_2334 Acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D PPUBIRD1_1761 AMP-binding domain protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D PPUBIRD1_4040 plsB; PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D PPUBIRD1_3711 Phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D PPUBIRD1_0429 Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PPUBIRD1_0087 Phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PPUBIRD1_3767 plsC; PlsC K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:ppb01008]
D PPUBIRD1_1971 MbtH domain protein K05375 mbtH; MbtH protein
D PPUBIRD1_1224 4'-phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
C 01006 Prenyltransferases [BR:ppb01006]
D PPUBIRD1_0568 ispA; IspA K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D PPUBIRD1_0728 ispB; IspB K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D PPUBIRD1_4020 uppS; UppS K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PPUBIRD1_4682 miaA; MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PPUBIRD1_5110 ubiA; UbiA K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D PPUBIRD1_0138 Protoheme IX farnesyltransferase 1 K02257 COX10; heme o synthase [EC:2.5.1.141]
D PPUBIRD1_0860 cyoE; CyoE K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:ppb01007]
D PPUBIRD1_3692 gltX; GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PPUBIRD1_2832 Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PPUBIRD1_4394 Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D PPUBIRD1_0473 tyrS; TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PPUBIRD1_4251 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PPUBIRD1_2831 cysS; CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PPUBIRD1_4878 argS; ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PPUBIRD1_1147 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PPUBIRD1_0654 ileS; IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PPUBIRD1_1028 valS; ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PPUBIRD1_4577 leuS; LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PPUBIRD1_4063 lysS; LysS K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PPUBIRD1_1250 aspS; AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PPUBIRD1_0905 hisS; HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PPUBIRD1_0090 glyQ; GlyQ K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PPUBIRD1_0089 glyS; GlyS K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PPUBIRD1_1814 serS; SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PPUBIRD1_1241 proS; ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PPUBIRD1_3213 thrS; ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PPUBIRD1_1429 alaS; AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PPUBIRD1_3209 pheS; PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PPUBIRD1_3208 pheT; PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PPUBIRD1_3743 Uncharacterized aminotransferase yfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D PPUBIRD1_0861 Uncharacterized aminotransferase yfdZ K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D PPUBIRD1_3696 tyrB_2; TyrB_2 K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_2203 tyrB; TyrB K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D PPUBIRD1_0909 Putative aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D PPUBIRD1_2041 aspC; AspC K12252 aruH; arginine:pyruvate transaminase [EC:2.6.1.84]
D PPUBIRD1_4027 Hypothetical protein, conserved K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D PPUBIRD1_1020 Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PPUBIRD1_0400 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PPUBIRD1_3823 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PPUBIRD1_0646 Omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D PPUBIRD1_0237 gabT; GabT K14268 davT; 5-aminovalerate/4-aminobutyrate aminotransferase [EC:2.6.1.48 2.6.1.19]
D PPUBIRD1_0409 Aminotransferase class-III K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PPUBIRD1_1421 argD; ArgD K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D PPUBIRD1_1626 Diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D PPUBIRD1_4977 Putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D PPUBIRD1_3471 Putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D PPUBIRD1_3092 Putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D PPUBIRD1_4771 Adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D PPUBIRD1_4567 hemL; HemL K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PPUBIRD1_2284 Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PPUBIRD1_3442 2-aminoethylphosphonate--pyruvate transaminase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D PPUBIRD1_3845 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:ppb00194]
D PPUBIRD1_0058 atpC; AtpC K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PPUBIRD1_0059 atpB; AtpB K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PPUBIRD1_0060 atpG; AtpG K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PPUBIRD1_0061 atpA; AtpA K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PPUBIRD1_0062 atpH; AtpH K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PPUBIRD1_0063 atpF; AtpF K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PPUBIRD1_0064 atpB_2; AtpB_2 K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PPUBIRD1_0065 atpI; AtpI K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ppb03000]
D PPUBIRD1_2256 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D PPUBIRD1_2625 Helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D PPUBIRD1_3031 Helix-turn-helix domain-containing protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D PPUBIRD1_2149 Helix-turn-helix domain-containing protein K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D PPUBIRD1_3479 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D PPUBIRD1_4300 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D PPUBIRD1_3649 Helix-turn-helix domain-containing protein K07506 K07506; AraC family transcriptional regulator
D PPUBIRD1_0748 Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PPUBIRD1_0334 AraC family transcriptional regulator K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D PPUBIRD1_1419 AraC family transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D PPUBIRD1_2063 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PPUBIRD1_0327 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PPUBIRD1_2268 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PPUBIRD1_4167 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PPUBIRD1_4445 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PPUBIRD1_2589 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PPUBIRD1_3475 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PPUBIRD1_0704 Transcriptional regulator AmpR, putative K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PPUBIRD1_1743 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PPUBIRD1_1406 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PPUBIRD1_3294 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PPUBIRD1_5053 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PPUBIRD1_5055 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PPUBIRD1_3904 pcaQ; PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D PPUBIRD1_1113 metR; MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D PPUBIRD1_2977 metR_2; MetR_2 K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D PPUBIRD1_3238 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D PPUBIRD1_5102 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D PPUBIRD1_0968 Chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PPUBIRD1_3359 cysB; CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D PPUBIRD1_2991 DNA-binding transcriptional regulator DsdC K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D PPUBIRD1_2928 LysR family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC
D PPUBIRD1_2614 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D PPUBIRD1_3168 LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D PPUBIRD1_2908 ttgS; TtgS K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D PPUBIRD1_3581 LysR family transcriptional regulator K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D PPUBIRD1_2058 LysR family transcriptional regulator K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D PPUBIRD1_3610 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D PPUBIRD1_0006 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D PPUBIRD1_0645 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D PPUBIRD1_4928 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D PPUBIRD1_0018 LysR family transcriptional regulator K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator
D PPUBIRD1_2050 catR; CatR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D PPUBIRD1_3337 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D PPUBIRD1_0112 LysR family transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator
D PPUBIRD1_1124 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D PPUBIRD1_3221 rbsR; RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PPUBIRD1_2400 ptxS; PtxS K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D PPUBIRD1_0836 DNA-binding transcriptional regulator FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D PPUBIRD1_2374 LacI family transcription regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D PPUBIRD1_4824 hutC; HutC K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D PPUBIRD1_3920 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D PPUBIRD1_3587 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D PPUBIRD1_4437 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PPUBIRD1_3400 GntR domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PPUBIRD1_1855 GntR domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PPUBIRD1_1856 GntR domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PPUBIRD1_2189 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PPUBIRD1_2018 glcC; GlcC K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D PPUBIRD1_2012 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PPUBIRD1_3039 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PPUBIRD1_0012 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PPUBIRD1_2024 GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
D PPUBIRD1_2828 DNA-binding transcriptional regulator CsiR K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D PPUBIRD1_2137 GntR family transcriptional regulator K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator
D PPUBIRD1_4851 Transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D PPUBIRD1_4173 ttgR; TtgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D PPUBIRD1_0644 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D PPUBIRD1_1781 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D PPUBIRD1_1561 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D PPUBIRD1_2855 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PPUBIRD1_4045 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D PPUBIRD1_4646 TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D PPUBIRD1_2080 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D PPUBIRD1_1859 TetR family transcriptional regulator K22294 nicS; TetR/AcrR family transcriptional regulator, upper aerobic nicotinate degradation pathway regulator
D PPUBIRD1_4559 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PPUBIRD1_1544 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PPUBIRD1_5065 lrp; Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PPUBIRD1_1442 bkdR; BkdR K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PPUBIRD1_4255 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PPUBIRD1_4983 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D PPUBIRD1_1303 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D PPUBIRD1_0813 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D PPUBIRD1_1385 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PPUBIRD1_0204 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PPUBIRD1_1862 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D PPUBIRD1_3754 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D PPUBIRD1_0635 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PPUBIRD1_2912 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PPUBIRD1_3590 soxR; SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D PPUBIRD1_2934 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D PPUBIRD1_4325 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D PPUBIRD1_0786 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D PPUBIRD1_4433 fur; Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PPUBIRD1_0147 Ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D PPUBIRD1_3079 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D PPUBIRD1_0052 Regulatory protein, IclR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D PPUBIRD1_3071 Beta-ketoadipate pathway transcription regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D PPUBIRD1_4186 pcaR; PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D PPUBIRD1_0461 CAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PPUBIRD1_1591 anr; Anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PPUBIRD1_2485 CRP/FNR family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PPUBIRD1_0892 BadM/Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D PPUBIRD1_2954 Regulatory protein, ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PPUBIRD1_0019 RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PPUBIRD1_1071 DNA-binding transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PPUBIRD1_0474 birA; BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PPUBIRD1_4604 fis; Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PPUBIRD1_1646 Cro/CI family transcriptional regulator K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D PPUBIRD1_1470 fleQ; FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PPUBIRD1_3395 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PPUBIRD1_2322 Fis family GAF modulated sigma54 specific transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PPUBIRD1_0607 Fis family GAF modulated sigma54 specific transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PPUBIRD1_0595 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PPUBIRD1_3226 Putative PAS/PAC sensor protein K12146 hyfR; hydrogenase-4 transcriptional activator
D PPUBIRD1_0853 Anaerobic nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D PPUBIRD1_2559 CdaR transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D PPUBIRD1_0397 ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D PPUBIRD1_2546 Hypothetical protein, conserved K21829 dauR; D-arginine utilization repressor
D PPUBIRD1_4730 putA; PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PPUBIRD1_3856 bolA; BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D PPUBIRD1_0066 parB; ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PPUBIRD1_2742 Putative ParB-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PPUBIRD1_2552 TenA family transcription regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D PPUBIRD1_2553 TenA family transcription regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D PPUBIRD1_1412 phhR; PhhR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D PPUBIRD1_1047 Sigma-54 dependent transcriptional regulator/sensory box protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D PPUBIRD1_1274 Glycine cleavage system transcriptional repressor, putative K03567 gcvR; glycine cleavage system transcriptional repressor
D PPUBIRD1_2486 PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D PPUBIRD1_5018 rnk; Rnk K06140 rnk; regulator of nucleoside diphosphate kinase
D PPUBIRD1_4785 pyrR; PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PPUBIRD1_0013 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D PPUBIRD1_4783 algH; AlgH K07735 algH; putative transcriptional regulator
D PPUBIRD1_3433 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D PPUBIRD1_4393 C4-type zinc finger DksA/TraR family protein K06204 dksA; RNA polymerase-binding transcription factor
D PPUBIRD1_0554 ATP cone domain protein K07738 nrdR; transcriptional repressor NrdR
D PPUBIRD1_4235 Protein mraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:ppb03021]
D PPUBIRD1_2895 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D PPUBIRD1_0516 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PPUBIRD1_0484 rpoB; RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PPUBIRD1_0485 rpoC; RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PPUBIRD1_5094 rpoZ; RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PPUBIRD1_0424 rpoD; RpoD K03086 rpoD; RNA polymerase primary sigma factor
D PPUBIRD1_3992 rpoS; RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D PPUBIRD1_1044 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PPUBIRD1_1344 RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PPUBIRD1_2681 rpoT; RpoT K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PPUBIRD1_2847 ECF subfamily RNA polymerase sigma-24 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PPUBIRD1_3564 sigX; SigX K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PPUBIRD1_4129 algU; AlgU K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PPUBIRD1_0388 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_2215 ECF subfamily RNA polymerase sigma-24 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_0192 fecI; FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_0866 ECF subfamily RNA polymerase sigma-24 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_0746 ECF subfamily RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_3578 ECF subfamily RNA polymerase sigma-24 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D PPUBIRD1_4897 rpoH; RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D PPUBIRD1_1005 rpoN; RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D PPUBIRD1_1510 fliA; FliA K02405 fliA; RNA polymerase sigma factor FliA
D PPUBIRD1_1188 hepA; HepA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D PPUBIRD1_4414 nusA; NusA K02600 nusA; transcription termination/antitermination protein NusA
D PPUBIRD1_0559 nusB; NusB K03625 nusB; transcription antitermination protein NusB
D PPUBIRD1_0479 nusG; NusG K02601 nusG; transcription termination/antitermination protein NusG
D PPUBIRD1_4242 Glutathione S-transferase domain-containing protein K03599 sspA; stringent starvation protein A
D PPUBIRD1_4241 sspB; SspB K03600 sspB; stringent starvation protein B
D PPUBIRD1_3042 Pas protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D PPUBIRD1_3489 Response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D PPUBIRD1_4128 mucA; MucA K03597 rseA; sigma-E factor negative regulatory protein RseA
D PPUBIRD1_4127 algN; AlgN K03598 rseB; sigma-E factor negative regulatory protein RseB
D PPUBIRD1_3433 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D PPUBIRD1_4393 C4-type zinc finger DksA/TraR family protein K06204 dksA; RNA polymerase-binding transcription factor
D PPUBIRD1_4424 greA; GreA K03624 greA; transcription elongation factor GreA
D PPUBIRD1_3370 greB; GreB K04760 greB; transcription elongation factor GreB
D PPUBIRD1_5010 rho; Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:ppb03019]
D PPUBIRD1_3719 Ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D PPUBIRD1_0989 cafA; CafA K08301 rng; ribonuclease G [EC:3.1.26.-]
D PPUBIRD1_4123 rnc; Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PPUBIRD1_4669 Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PPUBIRD1_4689 orn; Orn K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PPUBIRD1_4266 rhlB; RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D PPUBIRD1_4766 DEAD-box ATP dependent DNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D PPUBIRD1_4522 DEAD/DEAH box helicase domain-containing protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D PPUBIRD1_3747 DEAD-box ATP dependent DNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PPUBIRD1_1384 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D PPUBIRD1_4003 eno; Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PPUBIRD1_4409 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PPUBIRD1_5010 rho; Rho K03628 rho; transcription termination factor Rho
D PPUBIRD1_4429 dnaK; DnaK K04043 dnaK; molecular chaperone DnaK
D PPUBIRD1_4201 groEL; GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PPUBIRD1_4681 hfq; Hfq K03666 hfq; host factor-I protein
D PPUBIRD1_5013 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PPUBIRD1_0755 Hypothetical protein, conserved K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D PPUBIRD1_4398 pcnB; PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D PPUBIRD1_4937 nudH; NudH K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D PPUBIRD1_3867 Carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D PPUBIRD1_1431 csrA; CsrA K03563 csrA; carbon storage regulator
D PPUBIRD1_1948 CsrA-like carbon storage regulator K03563 csrA; carbon storage regulator
D PPUBIRD1_3568 Regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D PPUBIRD1_1002 Hypothetical protein, conserved K06958 rapZ; RNase adapter protein RapZ
D PPUBIRD1_1352 ATP-dependent RNA helicase hrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D PPUBIRD1_4529 hrpB; HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D PPUBIRD1_4548 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:ppb03011]
D PPUBIRD1_3841 rpsA; RpsA K02945 RP-S1; small subunit ribosomal protein S1
D PPUBIRD1_4024 rpsB; RpsB K02967 RP-S2; small subunit ribosomal protein S2
D PPUBIRD1_0497 rpsC; RpsC K02982 RP-S3; small subunit ribosomal protein S3
D PPUBIRD1_0515 rpsD; RpsD K02986 RP-S4; small subunit ribosomal protein S4
D PPUBIRD1_0508 rpsE; RpsE K02988 RP-S5; small subunit ribosomal protein S5
D PPUBIRD1_4667 rpsF; RpsF K02990 RP-S6; small subunit ribosomal protein S6
D PPUBIRD1_0487 rpsG; RpsG K02992 RP-S7; small subunit ribosomal protein S7
D PPUBIRD1_0505 rpsH; RpsH K02994 RP-S8; small subunit ribosomal protein S8
D PPUBIRD1_4246 rpsI; RpsI K02996 RP-S9; small subunit ribosomal protein S9
D PPUBIRD1_0490 rpsJ; RpsJ K02946 RP-S10; small subunit ribosomal protein S10
D PPUBIRD1_0514 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PPUBIRD1_0486 rpsL; RpsL K02950 RP-S12; small subunit ribosomal protein S12
D PPUBIRD1_0513 rpsM; RpsM K02952 RP-S13; small subunit ribosomal protein S13
D PPUBIRD1_0504 rpsN; RpsN K02954 RP-S14; small subunit ribosomal protein S14
D PPUBIRD1_4410 rpsO; RpsO K02956 RP-S15; small subunit ribosomal protein S15
D PPUBIRD1_4097 rpsP; RpsP K02959 RP-S16; small subunit ribosomal protein S16
D PPUBIRD1_0500 rpsQ; RpsQ K02961 RP-S17; small subunit ribosomal protein S17
D PPUBIRD1_4666 rpsR; RpsR K02963 RP-S18; small subunit ribosomal protein S18
D PPUBIRD1_0495 rpsS; RpsS K02965 RP-S19; small subunit ribosomal protein S19
D PPUBIRD1_0651 rpsT; RpsT K02968 RP-S20; small subunit ribosomal protein S20
D PPUBIRD1_0427 rpsU; RpsU K02970 RP-S21; small subunit ribosomal protein S21
D PPUBIRD1_0481 rplA; RplA K02863 RP-L1; large subunit ribosomal protein L1
D PPUBIRD1_0494 rplB; RplB K02886 RP-L2; large subunit ribosomal protein L2
D PPUBIRD1_0491 rplC; RplC K02906 RP-L3; large subunit ribosomal protein L3
D PPUBIRD1_0492 rplD; RplD K02926 RP-L4; large subunit ribosomal protein L4
D PPUBIRD1_0503 rplE; RplE K02931 RP-L5; large subunit ribosomal protein L5
D PPUBIRD1_0506 rplF; RplF K02933 RP-L6; large subunit ribosomal protein L6
D PPUBIRD1_4664 rplI; RplI K02939 RP-L9; large subunit ribosomal protein L9
D PPUBIRD1_0482 rplJ; RplJ K02864 RP-L10; large subunit ribosomal protein L10
D PPUBIRD1_0480 rplK; RplK K02867 RP-L11; large subunit ribosomal protein L11
D PPUBIRD1_0483 rplL; RplL K02935 RP-L7; large subunit ribosomal protein L7/L12
D PPUBIRD1_4247 rplM; RplM K02871 RP-L13; large subunit ribosomal protein L13
D PPUBIRD1_0501 rplN; RplN K02874 RP-L14; large subunit ribosomal protein L14
D PPUBIRD1_0510 rplO; RplO K02876 RP-L15; large subunit ribosomal protein L15
D PPUBIRD1_0498 rplP; RplP K02878 RP-L16; large subunit ribosomal protein L16
D PPUBIRD1_0517 rplQ; RplQ K02879 RP-L17; large subunit ribosomal protein L17
D PPUBIRD1_0507 rplR; RplR K02881 RP-L18; large subunit ribosomal protein L18
D PPUBIRD1_4094 rplS; RplS K02884 RP-L19; large subunit ribosomal protein L19
D PPUBIRD1_3210 rplT; RplT K02887 RP-L20; large subunit ribosomal protein L20
D PPUBIRD1_0729 rplU; RplU K02888 RP-L21; large subunit ribosomal protein L21
D PPUBIRD1_0496 rplV; RplV K02890 RP-L22; large subunit ribosomal protein L22
D PPUBIRD1_0493 rplW; RplW K02892 RP-L23; large subunit ribosomal protein L23
D PPUBIRD1_0502 rplX; RplX K02895 RP-L24; large subunit ribosomal protein L24
D PPUBIRD1_0730 rpmA; RpmA K02899 RP-L27; large subunit ribosomal protein L27
D PPUBIRD1_5076 rpmB; RpmB K02902 RP-L28; large subunit ribosomal protein L28
D PPUBIRD1_0499 rpmC; RpmC K02904 RP-L29; large subunit ribosomal protein L29
D PPUBIRD1_0509 rpmD; RpmD K02907 RP-L30; large subunit ribosomal protein L30
D PPUBIRD1_4876 rpmE; RpmE K02909 RP-L31; large subunit ribosomal protein L31
D PPUBIRD1_3712 rpmF; RpmF K02911 RP-L32; large subunit ribosomal protein L32
D PPUBIRD1_5075 rpmG; RpmG K02913 RP-L33; large subunit ribosomal protein L33
D PPUBIRD1_0073 Structural constituent of ribosome K02914 RP-L34; large subunit ribosomal protein L34
D PPUBIRD1_3211 rpmI; RpmI K02916 RP-L35; large subunit ribosomal protein L35
D PPUBIRD1_0512 Predicted protein K02919 RP-L36; large subunit ribosomal protein L36
D PPUBIRD1_0767 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PPUBIRD1_r0007 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0016 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0006 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0013 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0017 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0019 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0022 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0008 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0011 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0015 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0018 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0021 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0009 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:ppb03009]
D PPUBIRD1_4123 rnc; Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PPUBIRD1_2823 Hypothetical protein, conserved K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D PPUBIRD1_4689 orn; Orn K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PPUBIRD1_4122 era; Era K03595 era; GTPase
D PPUBIRD1_0731 obgE; ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D PPUBIRD1_3433 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D PPUBIRD1_4393 C4-type zinc finger DksA/TraR family protein K06204 dksA; RNA polymerase-binding transcription factor
D PPUBIRD1_4414 nusA; NusA K02600 nusA; transcription termination/antitermination protein NusA
D PPUBIRD1_0559 nusB; NusB K03625 nusB; transcription antitermination protein NusB
D PPUBIRD1_0479 nusG; NusG K02601 nusG; transcription termination/antitermination protein NusG
D PPUBIRD1_4149 Pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PPUBIRD1_0439 ksgA; KsgA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PPUBIRD1_0095 rsmB; RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PPUBIRD1_0808 Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PPUBIRD1_4904 Putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PPUBIRD1_4772 Hypothetical protein, conserved K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PPUBIRD1_0068 rsmG; RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PPUBIRD1_4234 mraW; MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PPUBIRD1_4236 Uroporphyrin-III C/tetrapyrrole methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PPUBIRD1_4046 Hypothetical protein, conserved K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D PPUBIRD1_4036 RRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D PPUBIRD1_4668 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PPUBIRD1_4421 Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D PPUBIRD1_1027 Ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D PPUBIRD1_4344 Ribosomal RNA large subunit methyltransferase G K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D PPUBIRD1_4591 Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PPUBIRD1_1546 Hypothetical protein, conserved K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PPUBIRD1_4917 Hypothetical protein, conserved K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PPUBIRD1_4728 Hypothetical protein, conserved K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D PPUBIRD1_3556 rlmL; RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D PPUBIRD1_3538 Ribosomal RNA large subunit methyltransferase M K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D PPUBIRD1_0901 Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PPUBIRD1_3962 rumA; RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D PPUBIRD1_3886 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PPUBIRD1_3541 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PPUBIRD1_1404 RNA-binding S4 domain-containing protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PPUBIRD1_3717 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D PPUBIRD1_0674 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PPUBIRD1_4561 Pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D PPUBIRD1_1232 RNA-binding S4 domain-containing protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D PPUBIRD1_0738 Acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D PPUBIRD1_0275 rimK; RimK K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D PPUBIRD1_4096 rimM; RimM K02860 rimM; 16S rRNA processing protein RimM
D PPUBIRD1_1234 rimO; RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D PPUBIRD1_2168 Hypothetical protein, conserved K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D PPUBIRD1_4601 prmA; PrmA K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D PPUBIRD1_3785 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D PPUBIRD1_1797 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D PPUBIRD1_3719 Ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D PPUBIRD1_0989 cafA; CafA K08301 rng; ribonuclease G [EC:3.1.26.-]
D PPUBIRD1_4784 Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D PPUBIRD1_4736 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D PPUBIRD1_3747 DEAD-box ATP dependent DNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PPUBIRD1_1366 DEAD/DEAH box helicase domain-containing protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D PPUBIRD1_4690 Putative ribosome biogenesis GTPase rsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PPUBIRD1_0908 engA; EngA K03977 engA; GTPase
D PPUBIRD1_4680 hflX; HflX K03665 hflX; GTPase
D PPUBIRD1_0099 rimN; RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PPUBIRD1_5095 spoT; SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PPUBIRD1_4412 rbfA; RbfA K02834 rbfA; ribosome-binding factor A
D PPUBIRD1_4415 Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP
D PPUBIRD1_4592 Iojap-like protein K09710 ybeB; ribosome-associated protein
D PPUBIRD1_4571 Putative metalloprotease K07042 ybeY; probable rRNA maturation factor
D PPUBIRD1_4422 Hypothetical protein, conserved K07574 yhbY; RNA-binding protein
D PPUBIRD1_0993 Hypothetical protein, conserved K09889 yjgA; ribosome-associated protein
D PPUBIRD1_1004 rpoX; RpoX K05808 hpf; ribosome hibernation promoting factor
D PPUBIRD1_0765 Translation-associated GTPase K06942 ychF; ribosome-binding ATPase
D PPUBIRD1_3713 Hypothetical protein, conserved K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:ppb03016]
D PPUBIRD1_1787 Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D PPUBIRD1_0432 cca; Cca K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D PPUBIRD1_3692 gltX; GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PPUBIRD1_1241 proS; ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PPUBIRD1_0654 ileS; IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PPUBIRD1_4577 leuS; LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PPUBIRD1_1147 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PPUBIRD1_2832 Glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PPUBIRD1_4878 argS; ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PPUBIRD1_4063 lysS; LysS K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PPUBIRD1_1250 aspS; AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PPUBIRD1_1429 alaS; AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PPUBIRD1_3213 thrS; ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PPUBIRD1_1814 serS; SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PPUBIRD1_2831 cysS; CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PPUBIRD1_1028 valS; ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PPUBIRD1_0905 hisS; HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PPUBIRD1_3209 pheS; PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PPUBIRD1_3208 pheT; PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PPUBIRD1_0473 tyrS; TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PPUBIRD1_4251 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PPUBIRD1_4815 dtD; DtD K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D PPUBIRD1_0465 Histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PPUBIRD1_4892 trmB; TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PPUBIRD1_1230 Hypothetical protein, conserved K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D PPUBIRD1_3676 truA; TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PPUBIRD1_4411 truB; TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PPUBIRD1_3996 truD; TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PPUBIRD1_3247 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PPUBIRD1_0893 iscS; IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PPUBIRD1_0099 rimN; RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PPUBIRD1_4682 miaA; MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PPUBIRD1_0070 mnmE; MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PPUBIRD1_0069 mnmG; MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PPUBIRD1_0872 Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D PPUBIRD1_0288 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D PPUBIRD1_0072 rnpA; RnpA K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D PPUBIRD1_1135 Ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D PPUBIRD1_5087 rph; Rph K00989 rph; ribonuclease PH [EC:2.7.7.56]
D PPUBIRD1_1307 rnd; Rnd K03684 rnd; ribonuclease D [EC:3.1.13.5]
D PPUBIRD1_3263 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D PPUBIRD1_0714 Uncharacterized ABC transporter ATP-binding protein HI1252 K06020 ettA; energy-dependent translational throttle protein EttA
D PPUBIRD1_0090 glyQ; GlyQ K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PPUBIRD1_0089 glyS; GlyS K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PPUBIRD1_4394 Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D PPUBIRD1_1127 YbaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D PPUBIRD1_0230 YbaK/prolyl-tRNA synthetase associated region K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D PPUBIRD1_1085 CMP/dCMP deaminase zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D PPUBIRD1_3485 TRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D PPUBIRD1_4603 TRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D PPUBIRD1_3687 TRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D PPUBIRD1_4118 TRNA (cmo5U34)-methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D PPUBIRD1_4119 TRNA (mo5U34)-methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D PPUBIRD1_0628 Methyltransferase, putative K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D PPUBIRD1_4350 trmA; TrmA K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D PPUBIRD1_4095 trmD; TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PPUBIRD1_0890 RNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D PPUBIRD1_2297 Hypothetical protein, conserved K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D PPUBIRD1_4840 RNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D PPUBIRD1_3886 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PPUBIRD1_3541 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PPUBIRD1_1800 mnmA; MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PPUBIRD1_3975 TRNA 2-thiocytidine biosynthesis protein ttcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D PPUBIRD1_3537 TusA-like sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PPUBIRD1_1271 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PPUBIRD1_1819 Hypothetical protein, conserved K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D PPUBIRD1_1820 Sulfur relay protein TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D PPUBIRD1_1821 Sulfur transfer complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D PPUBIRD1_1818 Hypothetical protein, conserved K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D PPUBIRD1_0895 iscA; IscA K13628 iscA; iron-sulfur cluster assembly protein
D PPUBIRD1_4134 Hypothetical protein, conserved K06980 ygfZ; tRNA-modifying protein YgfZ
D PPUBIRD1_3463 TRNA--hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D PPUBIRD1_3862 mnmC_2; MnmC_2 K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D PPUBIRD1_0883 queA; QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D PPUBIRD1_1264 exsB; ExsB K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PPUBIRD1_3344 6-pyruvoyl tetrahydrobiopterin synthase, putative K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PPUBIRD1_1263 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PPUBIRD1_3494 queF; QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PPUBIRD1_4687 Putative iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D PPUBIRD1_0871 TRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D PPUBIRD1_0884 tgt; Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PPUBIRD1_4834 thiI; ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PPUBIRD1_4007 TRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PPUBIRD1_4052 Hypothetical protein, conserved K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PPUBIRD1_0428 gcp; Gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PPUBIRD1_4685 Hypothetical protein, conserved K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PPUBIRD1_4033 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D PPUBIRD1_4669 Ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PPUBIRD1_4409 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ppb03012]
D PPUBIRD1_0616 Translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1
D PPUBIRD1_4413 infB; InfB K02519 infB; translation initiation factor IF-2
D PPUBIRD1_3212 infC; InfC K02520 infC; translation initiation factor IF-3
D PPUBIRD1_0225 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D PPUBIRD1_2097 ABC transporter-related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D PPUBIRD1_4023 tsf; Tsf K02357 tsf; elongation factor Ts
D PPUBIRD1_0477 tuf; Tuf K02358 tuf; elongation factor Tu
D PPUBIRD1_0489 tuf_2; Tuf_2 K02358 tuf; elongation factor Tu
D PPUBIRD1_1739 Elongation factor G 2 K02355 fusA; elongation factor G
D PPUBIRD1_0488 fusA; FusA K02355 fusA; elongation factor G
D PPUBIRD1_0533 selB; SelB K03833 selB; selenocysteine-specific elongation factor
D PPUBIRD1_0779 prfA; PrfA K02835 prfA; peptide chain release factor 1
D PPUBIRD1_4021 frr; Frr K02838 frr; ribosome recycling factor
D PPUBIRD1_0780 HemK family modification methylase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D PPUBIRD1_0766 pth; Pth K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D PPUBIRD1_1807 Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D PPUBIRD1_3756 efp; Efp K02356 efp; elongation factor P
D PPUBIRD1_4064 prfB; PrfB K02836 prfB; peptide chain release factor 2
D PPUBIRD1_0923 prfC; PrfC K02837 prfC; peptide chain release factor 3
D PPUBIRD1_4580 Hypothetical protein, conserved K09890 arfA; alternative ribosome-rescue factor
D PPUBIRD1_2729 Hypothetical protein, conserved K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:ppb03110]
D PPUBIRD1_1806 clpA; ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D PPUBIRD1_0677 clpB; ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PPUBIRD1_3384 clpX; ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D PPUBIRD1_4789 hslU; HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D PPUBIRD1_1673 htpG; HtpG K04079 HSP90A; molecular chaperone HtpG
D PPUBIRD1_4429 dnaK; DnaK K04043 dnaK; molecular chaperone DnaK
D PPUBIRD1_0897 hscA; HscA K04044 hscA; molecular chaperone HscA
D PPUBIRD1_4636 DnaK protein, putative K04046 yegD; hypothetical chaperone protein
D PPUBIRD1_4201 groEL; GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PPUBIRD1_4428 dnaJ; DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PPUBIRD1_4635 Curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D PPUBIRD1_0445 djlA; DjlA K05801 djlA; DnaJ like chaperone protein
D PPUBIRD1_0896 hscB; HscB K04082 hscB; molecular chaperone HscB
D PPUBIRD1_0279 hslO; HslO K04083 hslO; molecular chaperone Hsp33
D PPUBIRD1_4430 grpE; GrpE K03687 GRPE; molecular chaperone GrpE
D PPUBIRD1_3686 ibpA; IbpA K04080 ibpA; molecular chaperone IbpA
D PPUBIRD1_0277 hslR; HslR K04762 hslR; ribosome-associated heat shock protein Hsp15
D PPUBIRD1_4202 groES; GroES K04078 groES; chaperonin GroES
D PPUBIRD1_4126 algY; AlgY K04771 degP; serine protease Do [EC:3.4.21.107]
D PPUBIRD1_4420 ftsH; FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PPUBIRD1_0064 atpB_2; AtpB_2 K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PPUBIRD1_3326 csuC; CsuC K07346 fimC; fimbrial chaperone protein
D PPUBIRD1_4841 secB; SecB K03071 secB; preprotein translocase subunit SecB
D PPUBIRD1_1395 Spy-related protein K06006 cpxP; periplasmic protein CpxP/Spy
D PPUBIRD1_3305 Hypothetical protein, conserved K09796 pccA; periplasmic copper chaperone A
D PPUBIRD1_4623 Hypothetical protein, conserved K09796 pccA; periplasmic copper chaperone A
D PPUBIRD1_1358 ppiA; PpiA K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PPUBIRD1_2833 Peptidyl-prolyl cis-trans isomerase, cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D PPUBIRD1_3381 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D PPUBIRD1_0725 fklB_2; FklB_2 K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D PPUBIRD1_0222 fklB; FklB K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D PPUBIRD1_3903 Peptidylprolyl isomerase FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D PPUBIRD1_0656 Peptidylprolyl isomerase, FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D PPUBIRD1_0821 slyD; SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D PPUBIRD1_2641 ppiC; PpiC K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D PPUBIRD1_2650 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D PPUBIRD1_0441 Chaperone surA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D PPUBIRD1_5011 trx; Trx K03671 TXN; thioredoxin
D PPUBIRD1_4858 Thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D PPUBIRD1_0551 Thioredoxin K05838 ybbN; putative thioredoxin
D PPUBIRD1_2709 Glutaredoxin K03676 grxC; glutaredoxin 3
D PPUBIRD1_4842 grxC; GrxC K03676 grxC; glutaredoxin 3
D PPUBIRD1_1131 Glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D PPUBIRD1_0155 dsbA; DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D PPUBIRD1_0220 dsbB; DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D PPUBIRD1_0855 dsbB_2; DsbB_2 K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D PPUBIRD1_4090 Thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D PPUBIRD1_1618 dsbD; DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D PPUBIRD1_0611 dipZ; DipZ K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D PPUBIRD1_1530 dsbE; DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D PPUBIRD1_1616 dsbG; DsbG K03805 dsbG; thiol:disulfide interchange protein DsbG
C 04131 Membrane trafficking [BR:ppb04131]
D PPUBIRD1_0900 ndk; Ndk K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PPUBIRD1_0807 Hypothetical protein, conserved K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D PPUBIRD1_3505 gap_2; Gap_2 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PPUBIRD1_1059 gap; Gap K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PPUBIRD1_1555 pykF; PykF K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PPUBIRD1_4200 pykA; PykA K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PPUBIRD1_1673 htpG; HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:ppb04121]
C 03051 Proteasome [BR:ppb03051]
D PPUBIRD1_1673 htpG; HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:ppb03032]
D PPUBIRD1_1707 rnhA; RnhA K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PPUBIRD1_5106 hupA; HupA K05787 hupA; DNA-binding protein HU-alpha
D PPUBIRD1_1026 hupN; HupN K03530 hupB; DNA-binding protein HU-beta
D PPUBIRD1_3382 hupB; HupB K03530 hupB; DNA-binding protein HU-beta
D PPUBIRD1_3207 ihfA; IhfA K04764 ihfA; integration host factor subunit alpha
D PPUBIRD1_3839 ihfB; IhfB K05788 ihfB; integration host factor subunit beta
D PPUBIRD1_0074 dnaA; DnaA K02313 dnaA; chromosomal replication initiator protein
D PPUBIRD1_4663 dnaB; DnaB K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PPUBIRD1_2780 IstB domain protein ATP-binding protein K02315 dnaC; DNA replication protein DnaC
D PPUBIRD1_0426 dnaG_2; DnaG_2 K02316 dnaG; DNA primase [EC:2.7.7.101]
D PPUBIRD1_0522 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_2786 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_4009 dnaE; DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PPUBIRD1_0075 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PPUBIRD1_1030 holC; HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PPUBIRD1_4579 holA; HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PPUBIRD1_3703 holB; HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PPUBIRD1_4524 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_0389 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_1708 dnaQ; DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_1587 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PPUBIRD1_4010 rnhB; RnhB K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PPUBIRD1_0151 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PPUBIRD1_4752 ligB; LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PPUBIRD1_1581 ligA; LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PPUBIRD1_2746 Prophage PSPPH02, adenine modification methytransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D PPUBIRD1_3948 DNA replication initiation factor K10763 hda; DnaA-homolog protein
D PPUBIRD1_3846 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PPUBIRD1_0077 gyrB; GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PPUBIRD1_4699 parC; ParC K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PPUBIRD1_4702 parE; ParE K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D PPUBIRD1_3515 topA; TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PPUBIRD1_1949 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PPUBIRD1_1795 topB; TopB K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ppb03036]
D PPUBIRD1_4123 rnc; Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PPUBIRD1_5106 hupA; HupA K05787 hupA; DNA-binding protein HU-alpha
D PPUBIRD1_1026 hupN; HupN K03530 hupB; DNA-binding protein HU-beta
D PPUBIRD1_3382 hupB; HupB K03530 hupB; DNA-binding protein HU-beta
D PPUBIRD1_3207 ihfA; IhfA K04764 ihfA; integration host factor subunit alpha
D PPUBIRD1_3839 ihfB; IhfB K05788 ihfB; integration host factor subunit beta
D PPUBIRD1_4635 Curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D PPUBIRD1_4634 Chaperone modulatory protein cbpM K18997 cbpM; chaperone modulatory protein CbpM
D PPUBIRD1_0074 dnaA; DnaA K02313 dnaA; chromosomal replication initiator protein
D PPUBIRD1_1247 Ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein
D PPUBIRD1_4604 fis; Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PPUBIRD1_4681 hfq; Hfq K03666 hfq; host factor-I protein
D PPUBIRD1_0968 Chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PPUBIRD1_4559 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PPUBIRD1_1544 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PPUBIRD1_5065 lrp; Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PPUBIRD1_1442 bkdR; BkdR K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PPUBIRD1_4255 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PPUBIRD1_1025 ndpA; NdpA K06899 ndpA; nucleoid-associated protein
D PPUBIRD1_1579 Chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D PPUBIRD1_1401 Chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A
D PPUBIRD1_1402 Hypothetical protein, conserved K06024 scpB; segregation and condensation protein B
D PPUBIRD1_4222 ftsA; FtsA K03590 ftsA; cell division protein FtsA
D PPUBIRD1_4002 Septum formation initiator K05589 ftsB; cell division protein FtsB
D PPUBIRD1_4899 ftsE; FtsE K09812 ftsE; cell division transport system ATP-binding protein
D PPUBIRD1_4232 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PPUBIRD1_1810 ftsK; FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D PPUBIRD1_4233 Cell division protein FtsL K03586 ftsL; cell division protein FtsL
D PPUBIRD1_4223 Polypeptide-transport-associated domain-containing protein K03589 ftsQ; cell division protein FtsQ
D PPUBIRD1_4227 Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D PPUBIRD1_4898 Hypothetical protein, conserved K09811 ftsX; cell division transport system permease protein
D PPUBIRD1_4220 ftsZ; FtsZ K03531 ftsZ; cell division protein FtsZ
D PPUBIRD1_1580 zipA; ZipA K03528 zipA; cell division protein ZipA
D PPUBIRD1_4998 Hypothetical protein, conserved K09888 zapA; cell division protein ZapA
D PPUBIRD1_0349 Hypothetical protein, conserved K09888 zapA; cell division protein ZapA
D PPUBIRD1_4997 Hypothetical protein, conserved K09892 zapB; cell division protein ZapB
D PPUBIRD1_4250 AFG1 family ATPase K06916 zapE; cell division protein ZapE
D PPUBIRD1_3452 AFG1-family ATPase K06916 zapE; cell division protein ZapE
D PPUBIRD1_3335 AFG1-family ATPase K06916 zapE; cell division protein ZapE
D PPUBIRD1_4684 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PPUBIRD1_4174 ttgA; TtgA K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_2337 Efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_0958 RND efflux membrane fusion protein-related protein K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_3883 minC; MinC K03610 minC; septum site-determining protein MinC
D PPUBIRD1_3884 minD; MinD K03609 minD; septum site-determining protein MinD
D PPUBIRD1_3885 minE; MinE K03608 minE; cell division topological specificity factor
D PPUBIRD1_3512 Cell division inhibitor-related protein K13053 sulA; cell division inhibitor SulA
D PPUBIRD1_0985 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D PPUBIRD1_0986 Rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D PPUBIRD1_0987 mreD; MreD K03571 mreD; rod shape-determining protein MreD
D PPUBIRD1_4589 Rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D PPUBIRD1_1517 ParA family protein K03496 parA; chromosome partitioning protein
D PPUBIRD1_3275 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D PPUBIRD1_0067 ParA-like partition protein K03496 parA; chromosome partitioning protein
D PPUBIRD1_4859 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D PPUBIRD1_2124 Hypothetical protein, conserved K03496 parA; chromosome partitioning protein
D PPUBIRD1_0066 parB; ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PPUBIRD1_2742 Putative ParB-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PPUBIRD1_4699 parC; ParC K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PPUBIRD1_4702 parE; ParE K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D PPUBIRD1_0069 mnmG; MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PPUBIRD1_0068 rsmG; RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PPUBIRD1_5025 xerC; XerC K03733 xerC; integrase/recombinase XerC
D PPUBIRD1_2893 Phage integrase family protein K03733 xerC; integrase/recombinase XerC
D PPUBIRD1_4091 xerD; XerD K04763 xerD; integrase/recombinase XerD
D PPUBIRD1_1148 Hypothetical protein, conserved K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PPUBIRD1_0152 engB; EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:ppb03400]
D PPUBIRD1_2659 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D PPUBIRD1_0785 phrB; PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D PPUBIRD1_4144 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D PPUBIRD1_4595 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D PPUBIRD1_0315 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PPUBIRD1_1142 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PPUBIRD1_2895 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D PPUBIRD1_4214 Hypothetical protein, conserved K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PPUBIRD1_2506 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PPUBIRD1_2130 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PPUBIRD1_5080 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PPUBIRD1_0748 Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PPUBIRD1_2942 Deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D PPUBIRD1_2390 2OG-Fe(II) oxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D PPUBIRD1_0747 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D PPUBIRD1_0091 tag; Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D PPUBIRD1_4915 mutM; MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PPUBIRD1_5085 crc; Crc K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PPUBIRD1_2845 Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PPUBIRD1_2965 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PPUBIRD1_4082 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D PPUBIRD1_4752 ligB; LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PPUBIRD1_1581 ligA; LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PPUBIRD1_0151 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PPUBIRD1_0520 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A
D PPUBIRD1_2630 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D PPUBIRD1_3695 uvrB; UvrB K03702 uvrB; excinuclease ABC subunit B
D PPUBIRD1_1752 uvrC; UvrC K03703 uvrC; excinuclease ABC subunit C
D PPUBIRD1_0021 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PPUBIRD1_0484 rpoB; RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PPUBIRD1_0485 rpoC; RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PPUBIRD1_0516 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PPUBIRD1_5094 rpoZ; RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PPUBIRD1_3506 mfd; Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PPUBIRD1_3990 mutS; MutS K03555 mutS; DNA mismatch repair protein MutS
D PPUBIRD1_4683 mutL; MutL K03572 mutL; DNA mismatch repair protein MutL
D PPUBIRD1_4197 sbcB; SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D PPUBIRD1_1077 xseA; XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D PPUBIRD1_0569 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D PPUBIRD1_4009 dnaE; DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PPUBIRD1_0075 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PPUBIRD1_1030 holC; HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PPUBIRD1_4579 holA; HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PPUBIRD1_3703 holB; HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PPUBIRD1_4524 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_0389 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_1708 dnaQ; DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PPUBIRD1_1587 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PPUBIRD1_0522 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_2786 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_2746 Prophage PSPPH02, adenine modification methytransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D PPUBIRD1_4373 recB; RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PPUBIRD1_4374 recC; RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PPUBIRD1_4371 recD; RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PPUBIRD1_3987 recA; RecA K03553 recA; recombination protein RecA
D PPUBIRD1_1253 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PPUBIRD1_1254 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PPUBIRD1_1252 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PPUBIRD1_4877 priA; PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D PPUBIRD1_3627 sbcC; SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
D PPUBIRD1_3626 Nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D PPUBIRD1_4340 radA; RadA K04485 radA; DNA repair protein RadA/Sms
D PPUBIRD1_0076 recF; RecF K03629 recF; DNA replication and repair protein RecF
D PPUBIRD1_5103 recG; RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PPUBIRD1_4121 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D PPUBIRD1_1589 recR; RecR K06187 recR; recombination protein RecR
D PPUBIRD1_4432 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D PPUBIRD1_3915 rdgC; RdgC K03554 rdgC; recombination associated protein RdgC
D PPUBIRD1_4190 Hypothetical protein, conserved K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D PPUBIRD1_2520 Ku family containing protein K10979 ku; DNA end-binding protein Ku
D PPUBIRD1_2515 ligD; LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D PPUBIRD1_3846 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PPUBIRD1_0077 gyrB; GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PPUBIRD1_3515 topA; TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PPUBIRD1_1949 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PPUBIRD1_5106 hupA; HupA K05787 hupA; DNA-binding protein HU-alpha
D PPUBIRD1_1026 hupN; HupN K03530 hupB; DNA-binding protein HU-beta
D PPUBIRD1_3382 hupB; HupB K03530 hupB; DNA-binding protein HU-beta
D PPUBIRD1_4604 fis; Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PPUBIRD1_3207 ihfA; IhfA K04764 ihfA; integration host factor subunit alpha
D PPUBIRD1_3839 ihfB; IhfB K05788 ihfB; integration host factor subunit beta
D PPUBIRD1_1384 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D PPUBIRD1_1239 dinP; DinP K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D PPUBIRD1_2745 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V
D PPUBIRD1_2619 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D PPUBIRD1_3511 lexA; LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D PPUBIRD1_3291 polB; PolB K02336 polB; DNA polymerase II [EC:2.7.7.7]
D PPUBIRD1_2618 Hypothetical protein, conserved K14160 imuA; protein ImuA
D PPUBIRD1_2617 Hypothetical protein, conserved K14161 imuB; protein ImuB
D PPUBIRD1_2616 dnaE2; DnaE2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D PPUBIRD1_3986 recX; RecX K03565 recX; regulatory protein
D PPUBIRD1_5058 rep; Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D PPUBIRD1_1171 dinG; DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D PPUBIRD1_1111 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D PPUBIRD1_1153 DEAD/DEAH box helicase domain-containing protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D PPUBIRD1_1220 nrdA; NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PPUBIRD1_1218 nrdB; NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:ppb03029]
D PPUBIRD1_4244 Cytochrome b/b6 domain-containing protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D PPUBIRD1_4413 infB; InfB K02519 infB; translation initiation factor IF-2
D PPUBIRD1_3212 infC; InfC K02520 infC; translation initiation factor IF-3
D PPUBIRD1_4023 tsf; Tsf K02357 tsf; elongation factor Ts
D PPUBIRD1_0477 tuf; Tuf K02358 tuf; elongation factor Tu
D PPUBIRD1_0489 tuf_2; Tuf_2 K02358 tuf; elongation factor Tu
D PPUBIRD1_1739 Elongation factor G 2 K02355 fusA; elongation factor G
D PPUBIRD1_0488 fusA; FusA K02355 fusA; elongation factor G
D PPUBIRD1_4122 era; Era K03595 era; GTPase
D PPUBIRD1_0473 tyrS; TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PPUBIRD1_4577 leuS; LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PPUBIRD1_1250 aspS; AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PPUBIRD1_4878 argS; ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PPUBIRD1_0664 Putative amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PPUBIRD1_0982 gatA; GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PPUBIRD1_0981 gatB; GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PPUBIRD1_0983 gatC; GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PPUBIRD1_0522 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_2786 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D PPUBIRD1_2407 Surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D PPUBIRD1_4016 Surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D PPUBIRD1_4429 dnaK; DnaK K04043 dnaK; molecular chaperone DnaK
D PPUBIRD1_4430 grpE; GrpE K03687 GRPE; molecular chaperone GrpE
D PPUBIRD1_4201 groEL; GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PPUBIRD1_4202 groES; GroES K04078 groES; chaperonin GroES
D PPUBIRD1_4428 dnaJ; DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PPUBIRD1_3247 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PPUBIRD1_0893 iscS; IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PPUBIRD1_0896 hscB; HscB K04082 hscB; molecular chaperone HscB
D PPUBIRD1_1131 Glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D PPUBIRD1_1148 Hypothetical protein, conserved K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PPUBIRD1_0138 Protoheme IX farnesyltransferase 1 K02257 COX10; heme o synthase [EC:2.5.1.141]
D PPUBIRD1_0860 cyoE; CyoE K02257 COX10; heme o synthase [EC:2.5.1.141]
D PPUBIRD1_0133 cox11; Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D PPUBIRD1_0137 Cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D PPUBIRD1_0071 oxaA; OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PPUBIRD1_0135 Hypothetical protein, conserved K14998 SURF1; surfeit locus 1 family protein
D PPUBIRD1_3306 Electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D PPUBIRD1_0139 Electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D PPUBIRD1_2305 Electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D PPUBIRD1_2306 Electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D PPUBIRD1_1673 htpG; HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ppb02000]
D PPUBIRD1_3084 ABC transporter, permease/ATP-binding protein, putative K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D PPUBIRD1_3085 ABC transporter, permease/ATP-binding protein, putative K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D PPUBIRD1_4718 Lipid A export ATP-binding/permease protein msbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D PPUBIRD1_1357 ABC transporter related protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D PPUBIRD1_3062 ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D PPUBIRD1_2323 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PPUBIRD1_3534 Lipid ABC transporter ATPase/inner membrane protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PPUBIRD1_0850 ABC transporter related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D PPUBIRD1_0197 Toxin secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D PPUBIRD1_3853 ABC transporter related protein K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial
D PPUBIRD1_1640 Macrolide export ATP-binding/permease protein macB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D PPUBIRD1_1634 pvdE; PvdE K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D PPUBIRD1_3413 ABC transporter K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D PPUBIRD1_3521 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D PPUBIRD1_1552 Sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D PPUBIRD1_4965 Sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D PPUBIRD1_4963 cysT; CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D PPUBIRD1_4962 cysW; CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D PPUBIRD1_4961 cysA; CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D PPUBIRD1_1952 modA; ModA K02020 modA; molybdate transport system substrate-binding protein
D PPUBIRD1_1951 modB; ModB K02018 modB; molybdate transport system permease protein
D PPUBIRD1_1950 modC; ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D PPUBIRD1_0259 tauA; TauA K15551 tauA; taurine transport system substrate-binding protein
D PPUBIRD1_0257 tauC; TauC K15552 tauC; taurine transport system permease protein
D PPUBIRD1_0258 tauB; TauB K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D PPUBIRD1_0263 ssuA; SsuA K15553 ssuA; sulfonate transport system substrate-binding protein
D PPUBIRD1_2266 Aliphatic sulfonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D PPUBIRD1_0265 ssuC; SsuC K15554 ssuC; sulfonate transport system permease protein
D PPUBIRD1_0266 ssuB; SsuB K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PPUBIRD1_4671 Iron ABC transporter, periplasmic iron-binding protein, putative K02012 afuA; iron(III) transport system substrate-binding protein
D PPUBIRD1_4991 Iron ABC transporter, periplasmic iron-binding protein, putative K02012 afuA; iron(III) transport system substrate-binding protein
D PPUBIRD1_4925 ABC transporter, periplasmic binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D PPUBIRD1_4672 Binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D PPUBIRD1_4990 Binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D PPUBIRD1_4926 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D PPUBIRD1_1128 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D PPUBIRD1_4927 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D PPUBIRD1_4975 potF; PotF K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_4976 potF_2; PotF_2 K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_2585 Periplasmic polyamine-binding protein, putative K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_3456 Periplasmic polyamine-binding protein, putative K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_2043 Periplasmic polyamine-binding protein, putative K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_0011 ABC transporter, periplasmic polyamine-binding protein, putative K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_0924 Extracellular solute-binding protein K11073 potF; putrescine transport system substrate-binding protein
D PPUBIRD1_4972 potI; PotI K11074 potI; putrescine transport system permease protein
D PPUBIRD1_4973 potH; PotH K11075 potH; putrescine transport system permease protein
D PPUBIRD1_4974 potG; PotG K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D PPUBIRD1_4073 Extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D PPUBIRD1_0450 Polyamine ABC transporter, periplasmic polyamine-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D PPUBIRD1_2865 Spermidine/putrescine-binding periplasmic protein-like protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D PPUBIRD1_3891 ABC-type Fe3+ transport system periplasmic component-like protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D PPUBIRD1_1965 Extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D PPUBIRD1_4076 Binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_3894 Binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_0452 Binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_1963 Binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_4075 Binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_0451 Binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_3893 Binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_1964 Binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D PPUBIRD1_4074 Spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D PPUBIRD1_3895 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D PPUBIRD1_1962 Polyamine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D PPUBIRD1_0449 Spermidine/putrescine ABC transporter ATPase K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D PPUBIRD1_0105 Glycine betaine-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PPUBIRD1_3876 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PPUBIRD1_0325 Glycine betaine/L-proline ABC transporter, periplasmic binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PPUBIRD1_2236 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PPUBIRD1_0333 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PPUBIRD1_0324 Glycine betaine/L-proline ABC transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein
D PPUBIRD1_2235 Binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein
D PPUBIRD1_0323 Glycine betaine/L-proline ABC transporter, ATP-binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D PPUBIRD1_0921 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D PPUBIRD1_0920 Binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D PPUBIRD1_0922 Binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D PPUBIRD1_0919 Glycine betaine/L-proline ABC transporter, ATPase subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D PPUBIRD1_2540 ABC transporter, periplasmic binding component-related protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D PPUBIRD1_2153 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D PPUBIRD1_2543 ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D PPUBIRD1_2154 Binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D PPUBIRD1_2542 ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D PPUBIRD1_2152 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D PPUBIRD1_2470 malK; MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D PPUBIRD1_1068 Sugar ABC transporter, ATP-binding subunit K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D PPUBIRD1_1065 Sugar ABC transporter, periplasmic sugar-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D PPUBIRD1_1066 Binding-protein-dependent transport systems inner membrane component K17316 gtsB; glucose/mannose transport system permease protein
D PPUBIRD1_1067 Binding-protein-dependent transport systems inner membrane component K17317 gtsC; glucose/mannose transport system permease protein
D PPUBIRD1_2473 Sugar ABC transporter, periplasmic sugar-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein
D PPUBIRD1_2472 Sugar ABC transporter, permease protein K10237 thuF; trehalose/maltose transport system permease protein
D PPUBIRD1_2471 Sugar ABC transporter, permease protein K10238 thuG; trehalose/maltose transport system permease protein
D PPUBIRD1_3224 rbsB; RbsB K10439 rbsB; ribose transport system substrate-binding protein
D PPUBIRD1_3222 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D PPUBIRD1_3223 ABC transporter related protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D PPUBIRD1_3389 Extracellular solute-binding protein, family 1 K17321 glpV; glycerol transport system substrate-binding protein
D PPUBIRD1_3392 Binding-protein-dependent transport systems inner membrane component K17322 glpP; glycerol transport system permease protein
D PPUBIRD1_3391 Binding-protein-dependent transport systems inner membrane component K17323 glpQ; glycerol transport system permease protein
D PPUBIRD1_3394 Sugar ABC transporter, ATP-binding protein K17324 glpS; glycerol transport system ATP-binding protein
D PPUBIRD1_3393 Sugar ABC transporter, ATP-binding protein K17325 glpT; glycerol transport system ATP-binding protein
D PPUBIRD1_1013 ttg2C; Ttg2C K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PPUBIRD1_0169 Hypothetical protein, conserved K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PPUBIRD1_1012 Hypothetical protein, conserved K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PPUBIRD1_0171 Hypothetical protein, conserved K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PPUBIRD1_1011 ttg2A; Ttg2A K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PPUBIRD1_0170 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PPUBIRD1_0168 Putative lipoprotein K18480 linN; cholesterol transport system auxiliary component
D PPUBIRD1_1014 ttg2D; Ttg2D K07323 mlaC; phospholipid transport system substrate-binding protein
D PPUBIRD1_1015 ttg2E; Ttg2E K07122 mlaB; phospholipid transport system transporter-binding protein
D PPUBIRD1_5121 Phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D PPUBIRD1_3020 Phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D PPUBIRD1_1961 OmpA/MotB domain protein K02040 pstS; phosphate transport system substrate-binding protein
D PPUBIRD1_5120 Binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein
D PPUBIRD1_3019 Phosphate ABC transporter inner membrane protein K02037 pstC; phosphate transport system permease protein
D PPUBIRD1_5119 pstA; PstA K02038 pstA; phosphate transport system permease protein
D PPUBIRD1_3018 Phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D PPUBIRD1_5118 pstB; PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PPUBIRD1_3017 Phosphate import ATP-binding protein pstB 1 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PPUBIRD1_0873 Phosphonate ABC transporter periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D PPUBIRD1_0875 Phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D PPUBIRD1_0876 Phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D PPUBIRD1_0874 Phosphonates import ATP-binding protein phnC K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D PPUBIRD1_1121 Extracellular solute-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D PPUBIRD1_1119 Polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D PPUBIRD1_1120 Polar amino acid ABC transporter inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D PPUBIRD1_1118 ABC transporter related protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_4263 aapJ; AapJ K09969 aapJ; general L-amino acid transport system substrate-binding protein
D PPUBIRD1_4262 aapQ; AapQ K09970 aapQ; general L-amino acid transport system permease protein
D PPUBIRD1_4261 aapM; AapM K09971 aapM; general L-amino acid transport system permease protein
D PPUBIRD1_4260 aapP; AapP K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_0251 Cystine transporter subunit K02424 tcyA; L-cystine transport system substrate-binding protein
D PPUBIRD1_4948 Hypothetical protein, conserved K02424 tcyA; L-cystine transport system substrate-binding protein
D PPUBIRD1_0250 Polar amino acid ABC transporter inner membrane subunit K10009 tcyB; L-cystine transport system permease protein
D PPUBIRD1_0249 Putative amino-acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_1415 Cationic amino acid ABC transporter, periplasmic binding protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D PPUBIRD1_1417 Polar amino acid ABC transporter inner membrane subunit K10023 aotM; arginine/ornithine transport system permease protein
D PPUBIRD1_1416 Polar amino acid ABC transporter inner membrane subunit K10024 aotQ; arginine/ornithine transport system permease protein
D PPUBIRD1_1418 Basic amino acid ABC transporter, ATP-binding protein K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_3047 ABC-type branched-chain amino acid transport systems periplasmic component-like protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_0670 Branched chain amino acid ABC transporter amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_1185 braC; BraC K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_4654 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PPUBIRD1_0669 Inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D PPUBIRD1_1184 Inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D PPUBIRD1_4653 Inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D PPUBIRD1_0668 Inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D PPUBIRD1_1183 livM; LivM K01998 livM; branched-chain amino acid transport system permease protein
D PPUBIRD1_4652 Inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D PPUBIRD1_0667 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_1182 livG; LivG K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_4651 Branched chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_0666 ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_1181 braG; BraG K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_4650 Branched chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PPUBIRD1_4958 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D PPUBIRD1_0244 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D PPUBIRD1_0140 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D PPUBIRD1_0242 Binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D PPUBIRD1_0141 ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein
D PPUBIRD1_0243 metN2; MetN2 K02071 metN; D-methionine transport system ATP-binding protein
D PPUBIRD1_0142 metN1; MetN1 K02071 metN; D-methionine transport system ATP-binding protein
D PPUBIRD1_4628 Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative K11959 urtA; urea transport system substrate-binding protein
D PPUBIRD1_4629 Inner-membrane translocator K11960 urtB; urea transport system permease protein
D PPUBIRD1_4630 Branched-chain amino acid ABC transporter, permease protein, putative K11961 urtC; urea transport system permease protein
D PPUBIRD1_4631 ABC transporter related protein K11962 urtD; urea transport system ATP-binding protein
D PPUBIRD1_4632 ABC transporter related protein K11963 urtE; urea transport system ATP-binding protein
D PPUBIRD1_0308 Amino acid ABC transporter, periplasmic amino acid-binding protein K23055 K23055; putative lysine/arginine/ornithine/histidine/octopine transport system substrate-binding protein
D PPUBIRD1_0307 Polar amino acid ABC transporter, inner membrane subunit K23056 K23056; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein
D PPUBIRD1_0306 Polar amino acid ABC transporter, inner membrane subunit K23057 K23057; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein
D PPUBIRD1_0309 ABC transporter related protein K23058 K23058; putative lysine/arginine/ornithine/histidine/octopine transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_2079 Amino acid ABC transporter, periplasmic amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_4454 Amino acid ABC transporter, periplasmic amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_2199 Extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_0700 Extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_4739 Hypothetical protein, conserved K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_4764 Extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_2033 Periplasmic amino acid-binding protein-related protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_0562 Hypothetical protein, conserved K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_1586 Extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_4812 Amino acid ABC transporter, periplasmic amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_2164 Hypothetical protein, conserved K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_1651 Hypothetical protein, conserved K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_3000 Extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PPUBIRD1_0699 Polar amino acid ABC transporter inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D PPUBIRD1_4455 Amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D PPUBIRD1_2197 Polar amino acid ABC transporter inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D PPUBIRD1_2093 Polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D PPUBIRD1_2094 Polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D PPUBIRD1_4456 Amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D PPUBIRD1_4811 Polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D PPUBIRD1_2198 Polar amino acid ABC transporter inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D PPUBIRD1_4810 Amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_2195 Amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_2092 ABC transporter related protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_4457 Amino acid ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D PPUBIRD1_0935 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_0936 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_0933 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_5077 Extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D PPUBIRD1_0932 dppB; DppB K12369 dppB; dipeptide transport system permease protein
D PPUBIRD1_0931 Binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein
D PPUBIRD1_0930 Oligopeptide/dipeptide ABC transporter, ATPase subunit K12371 dppD; dipeptide transport system ATP-binding protein
D PPUBIRD1_0929 dppF; DppF K12372 dppF; dipeptide transport system ATP-binding protein
D PPUBIRD1_1848 Extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PPUBIRD1_1850 Extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PPUBIRD1_1849 Binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PPUBIRD1_1851 Binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PPUBIRD1_1852 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PPUBIRD1_1853 ABC transporter related protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D PPUBIRD1_1702 Peptide ABC transporter, periplasmic peptide-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D PPUBIRD1_1703 Peptide ABC transporter, periplasmic peptide-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D PPUBIRD1_2642 Extracellular solute-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D PPUBIRD1_1701 Binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein
D PPUBIRD1_2643 Binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein
D PPUBIRD1_1700 Binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D PPUBIRD1_2644 Binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D PPUBIRD1_1699 ABC transporter related protein K13896 yejF; microcin C transport system ATP-binding protein
D PPUBIRD1_4389 Periplasmic binding protein K25132 hmuT; heme transport system substrate-binding protein
D PPUBIRD1_4388 Transport system permease protein K25133 hmuU; heme transport system permease protein
D PPUBIRD1_4387 hmuV; HmuV K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D PPUBIRD1_3089 Ferric siderophore ABC transporter, periplasmic siderophore-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D PPUBIRD1_3087 Ferric siderophore ABC transporter, permease protein K25283 yclO; iron-siderophore transport system permease protein
D PPUBIRD1_3086 Ferric siderophore ABC transporter, permease protein K25284 yclN; iron-siderophore transport system permease protein
D PPUBIRD1_3088 Ferric siderophore ABC transporter, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D PPUBIRD1_3269 Periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D PPUBIRD1_3270 Transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D PPUBIRD1_3271 Iron ABC transporter, ATP-binding protein, putative K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D PPUBIRD1_0565 Periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D PPUBIRD1_1980 Periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D PPUBIRD1_0148 Periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D PPUBIRD1_1978 Hypothetical protein, conserved K09816 znuB; zinc transport system permease protein
D PPUBIRD1_0145 znuB; ZnuB K09816 znuB; zinc transport system permease protein
D PPUBIRD1_1979 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D PPUBIRD1_0146 znuC; ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D PPUBIRD1_3805 Lipopolysaccharide biosynthesis protein K10107 kpsE; capsular polysaccharide transport system permease protein
D PPUBIRD1_3804 ABC transporter related protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D PPUBIRD1_1032 Permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D PPUBIRD1_1033 Permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D PPUBIRD1_1006 ABC transporter related protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D PPUBIRD1_3498 LolC/E family lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D PPUBIRD1_3500 lolC; LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D PPUBIRD1_3499 lolD; LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D PPUBIRD1_1527 ccmD; CcmD K02196 ccmD; heme exporter protein D
D PPUBIRD1_1526 ccmC; CcmC K02195 ccmC; heme exporter protein C
D PPUBIRD1_1525 ccmB; CcmB K02194 ccmB; heme exporter protein B
D PPUBIRD1_1524 Cytochrome c biogenesis ATP-binding export protein ccmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D PPUBIRD1_4898 Hypothetical protein, conserved K09811 ftsX; cell division transport system permease protein
D PPUBIRD1_4899 ftsE; FtsE K09812 ftsE; cell division transport system ATP-binding protein
D PPUBIRD1_5004 ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D PPUBIRD1_1615 Hypothetical protein, conserved K01992 ABC-2.P; ABC-2 type transport system permease protein
D PPUBIRD1_3009 ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D PPUBIRD1_3729 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D PPUBIRD1_3008 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PPUBIRD1_3730 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PPUBIRD1_1614 ABC-type multidrug transport system ATPase component-like protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PPUBIRD1_0547 Hypothetical protein, conserved K02004 ABC.CD.P; putative ABC transport system permease protein
D PPUBIRD1_2028 Hypothetical protein, conserved K02004 ABC.CD.P; putative ABC transport system permease protein
D PPUBIRD1_3369 Hypothetical protein, conserved K02004 ABC.CD.P; putative ABC transport system permease protein
D PPUBIRD1_0548 Efflux ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PPUBIRD1_2027 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PPUBIRD1_3368 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PPUBIRD1_2857 Bile acid/Na+ symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D PPUBIRD1_5056 Probable multidrug resistance protein norM K26939 norM; MATE family, multidrug efflux pump
D PPUBIRD1_0619 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D PPUBIRD1_4160 Major facilitator superfamily metabolite/H(+) symporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D PPUBIRD1_4182 Major facilitator superfamily metabolite/H(+) symporter K02625 pcaT; MFS transporter, MHS family, dicarboxylic acid transporter PcaT
D PPUBIRD1_3276 Major facilitator transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PPUBIRD1_2062 Major facilitator transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PPUBIRD1_2820 proP; ProP K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PPUBIRD1_5122 Major facilitator family transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PPUBIRD1_2192 D-galactonate transporter K03535 gudP; MFS transporter, ACS family, glucarate transporter
D PPUBIRD1_3076 Major facilitator family transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D PPUBIRD1_2449 Putative transport protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D PPUBIRD1_3611 Major facilitator family transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter
D PPUBIRD1_3907 Major facilitator superfamily transporter phthalate permease K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter
D PPUBIRD1_3164 Major facilitator transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D PPUBIRD1_2621 Major facilitator transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D PPUBIRD1_4185 4-hydroxybenzoate transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D PPUBIRD1_2568 benK; BenK K05548 benK; MFS transporter, AAHS family, benzoate transport protein
D PPUBIRD1_2022 Major facilitator transporter K26744 vanK; MFS transporter, AAHS family, vanillate permease
D PPUBIRD1_2011 Major facilitator transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D PPUBIRD1_1023 Cyanate transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D PPUBIRD1_3781 Major facilitator transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D PPUBIRD1_3560 Nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D PPUBIRD1_4207 AmpG-related permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D PPUBIRD1_0639 Bcr/CflA family multidrug resistance transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D PPUBIRD1_2460 Bcr/CflA family multidrug resistance transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D PPUBIRD1_1898 Drug resistance transporter Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D PPUBIRD1_3254 Sugar efflux transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D PPUBIRD1_4208 Major facilitator transporter K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D PPUBIRD1_2412 Major facilitator family transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D PPUBIRD1_3147 Major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D PPUBIRD1_3319 Major facilitator family transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D PPUBIRD1_3694 EmrB/QacA family drug resistance transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D PPUBIRD1_2246 EmrB/QacA family drug resistance transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D PPUBIRD1_4290 trpA_2; TrpA_2 K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D PPUBIRD1_3586 EmrB/QacA family drug resistance transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D PPUBIRD1_1551 Major facilitator transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D PPUBIRD1_2095 Major facilitator superfamily MFS_1 K08166 mmr; MFS transporter, DHA2 family, methylenomycin A resistance protein
D PPUBIRD1_3321 Major facilitator transporter K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D PPUBIRD1_0742 Major facilitator transporter K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D PPUBIRD1_4861 Major facilitator family transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D PPUBIRD1_2076 Major facilitator transporter K08368 yaaU; MFS transporter, putative metabolite transport protein
D PPUBIRD1_0049 Major facilitator transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D PPUBIRD1_4936 ptsP; PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D PPUBIRD1_1001 ptsO; PtsO K08485 ptsO; phosphocarrier protein NPr
D PPUBIRD1_0838 fruB; FruB K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D PPUBIRD1_0840 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D PPUBIRD1_1003 ptsN; PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D PPUBIRD1_1573 Aquaporin Z K06188 aqpZ; aquaporin Z
D PPUBIRD1_1126 glpF; GlpF K02440 glpF; glycerol uptake facilitator
D PPUBIRD1_1553 Cation transporter, voltage-gated ion channel cation transporter K10716 kch; voltage-gated potassium channel
D PPUBIRD1_3545 Rh family protein/ammonium transporter K03320 amt; ammonium transporter, Amt family
D PPUBIRD1_5028 amtB; AmtB K03320 amt; ammonium transporter, Amt family
D PPUBIRD1_2020 Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_3146 Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_3791 Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_0212 gstE; GstE K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_1207 Glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_4215 Glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_3731 Glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PPUBIRD1_4242 Glutathione S-transferase domain-containing protein K03599 sspA; stringent starvation protein A
D PPUBIRD1_3623 Von Willebrand factor type A domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D PPUBIRD1_3624 TPR repeat-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D PPUBIRD1_1823 Hypothetical protein, conserved K19416 yccA; modulator of FtsH protease
D PPUBIRD1_3228 Formate/nitrite transporter K21993 fdhC; formate transporter
D PPUBIRD1_4341 mscL; MscL K03282 mscL; large conductance mechanosensitive channel
D PPUBIRD1_4856 Potassium efflux system kefA K05802 mscK; potassium-dependent mechanosensitive channel
D PPUBIRD1_0749 MscS mechanosensitive ion channel K05802 mscK; potassium-dependent mechanosensitive channel
D PPUBIRD1_4209 MscS mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D PPUBIRD1_3889 Hypothetical protein, conserved K22044 ybiO; moderate conductance mechanosensitive channel
D PPUBIRD1_1364 MscS mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel
D PPUBIRD1_1432 mgtE; MgtE K06213 mgtE; magnesium transporter
D PPUBIRD1_1554 Urea transporter K08717 utp; urea transporter
D PPUBIRD1_3045 AmiS/UreI transporter K22112 amiS; putative amide transporter protein
D PPUBIRD1_4692 Flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D PPUBIRD1_1515 motC; MotC K02556 motA; chemotaxis protein MotA
D PPUBIRD1_4691 motB; MotB K02557 motB; chemotaxis protein MotB
D PPUBIRD1_1516 Flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D PPUBIRD1_1137 OmpA/MotB domain-containing protein K21218 motY; sodium-type flagellar protein MotY
D PPUBIRD1_3726 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D PPUBIRD1_5099 TonB-system energizer ExbB type-1 K03561 exbB; biopolymer transport protein ExbB
D PPUBIRD1_5100 exbD; ExbD K03559 exbD; biopolymer transport protein ExbD
D PPUBIRD1_3725 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D PPUBIRD1_1256 tolQ; TolQ K03562 tolQ; biopolymer transport protein TolQ
D PPUBIRD1_1257 tolR; TolR K03560 tolR; biopolymer transport protein TolR
D PPUBIRD1_2712 Magnesium/cobalt transporter CorA family protein K03284 corA; magnesium transporter
D PPUBIRD1_3768 Mg2+/Co2+ transporter K03284 corA; magnesium transporter
D PPUBIRD1_3567 cmaX; CmaX K16074 zntB; zinc transporter
D PPUBIRD1_1813 crcB; CrcB K06199 crcB; fluoride exporter
D PPUBIRD1_1299 Hypothetical protein, conserved K08994 yneE; ion channel-forming bestrophin family protein
D PPUBIRD1_0877 Hypothetical protein, conserved K08994 yneE; ion channel-forming bestrophin family protein
D PPUBIRD1_5114 Hypothetical protein, conserved K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PPUBIRD1_4100 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PPUBIRD1_2474 scrY; ScrY K16077 scrY; sucrose porin
D PPUBIRD1_3563 oprF; OprF K03286 TC.OOP; OmpA-OmpF porin, OOP family
D PPUBIRD1_4474 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D PPUBIRD1_1889 Outer membrane protein precursor K06076 fadL; long-chain fatty acid transport protein
D PPUBIRD1_0046 Outer membrane protein precursor K06076 fadL; long-chain fatty acid transport protein
D PPUBIRD1_3928 Membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein
D PPUBIRD1_3325 csuD; CsuD K07347 fimD; outer membrane usher protein
D PPUBIRD1_3664 Fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D PPUBIRD1_0456 Hypothetical protein, conserved K12686 apeE; outer membrane lipase/esterase
D PPUBIRD1_4277 Alginate production protein algE K16081 algE; alginate production protein
D PPUBIRD1_3412 fepA; FepA K19611 fepA; ferric enterobactin receptor
D PPUBIRD1_0912 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor
D PPUBIRD1_2177 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor
D PPUBIRD1_0918 FecA-like outer membrane receptor K16091 fecA; Fe(3+) dicitrate transport protein
D PPUBIRD1_0566 TonB-dependent receptor, plug K16092 btuB; vitamin B12 transporter
D PPUBIRD1_3161 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PPUBIRD1_3580 Ferric-pseudobactin M114 receptor pbuA K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PPUBIRD1_1632 fpvA; FpvA K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PPUBIRD1_3262 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PPUBIRD1_0868 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PPUBIRD1_0300 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PPUBIRD1_0575 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D PPUBIRD1_1056 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D PPUBIRD1_0190 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_3090 Outer membrane ferric siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_0385 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_4625 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_3458 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_2697 Putative siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_3267 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_4113 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_1681 TonB-dependent receptor, plug K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_1698 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_1713 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_2577 Outer membrane ferric siderophore receptor, putative K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_4301 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_2426 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_2432 Outer membrane ferric siderophore receptor, putative K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_4461 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_0294 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_3765 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_2217 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D PPUBIRD1_4710 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D PPUBIRD1_1380 TolC family type I secretion outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system
D PPUBIRD1_0851 TolC family type I secretion outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system
D PPUBIRD1_2361 RND efflux system outer membrane lipoprotein K18300 oprN; outer membrane protein, multidrug efflux system
D PPUBIRD1_4176 ttgC; TtgC K18139 oprM; outer membrane protein, multidrug efflux system
D PPUBIRD1_1639 RND efflux transporter K18139 oprM; outer membrane protein, multidrug efflux system
D PPUBIRD1_2608 Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D PPUBIRD1_3806 Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D PPUBIRD1_2224 Carbohydrate-selective porin OprB K07267 oprB; porin
D PPUBIRD1_4114 oprB; OprB K07267 oprB; porin
D PPUBIRD1_1069 Porin B K07267 oprB; porin
D PPUBIRD1_1242 oprD; OprD K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D PPUBIRD1_5044 Porin, putative K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D PPUBIRD1_3167 Outer membrane porin K16517 galP; porin-like protein GalP
D PPUBIRD1_2407 Surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D PPUBIRD1_4016 Surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D PPUBIRD1_0907 Outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB
D PPUBIRD1_1276 Hypothetical protein, conserved K07287 bamC; outer membrane protein assembly factor BamC
D PPUBIRD1_0673 DNA uptake lipoprotein-like protein K05807 bamD; outer membrane protein assembly factor BamD
D PPUBIRD1_4434 SmpA/OmlA domain-containing protein K06186 bamE; outer membrane protein assembly factor BamE
D PPUBIRD1_2843 Surface antigen (D15) K07278 tamA; translocation and assembly module TamA
D PPUBIRD1_2842 Hypothetical protein, conserved K09800 tamB; translocation and assembly module TamB
D PPUBIRD1_1846 Oligogalacturonate-specific porin K22110 kdgM; oligogalacturonate-specific porin family protein
D PPUBIRD1_1007 Hypothetical protein, conserved K09774 lptA; lipopolysaccharide export system protein LptA
D PPUBIRD1_1008 Hypothetical protein, conserved K11719 lptC; lipopolysaccharide export system protein LptC
D PPUBIRD1_0442 LPS-assembly protein lptD K04744 lptD; LPS-assembly protein
D PPUBIRD1_4578 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D PPUBIRD1_3052 Cellulose synthase subunit BcsC K20543 bcsC; cellulose synthase operon protein C
D PPUBIRD1_4572 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein
D PPUBIRD1_4320 LrgA family protein K06518 cidA; holin-like protein
D PPUBIRD1_4599 LrgA family protein K06518 cidA; holin-like protein
D PPUBIRD1_1405 Amino acid ABC transporter permease K11734 aroP; aromatic amino acid transport protein AroP
D PPUBIRD1_0978 aroP; AroP K11734 aroP; aromatic amino acid transport protein AroP
D PPUBIRD1_1744 gabP_2; GabP_2 K11735 gabP; GABA permease
D PPUBIRD1_0311 gabP; GabP K11735 gabP; GABA permease
D PPUBIRD1_3134 Amino acid ABC transporter permease K11735 gabP; GABA permease
D PPUBIRD1_4508 Amino acid permease-associated region K11735 gabP; GABA permease
D PPUBIRD1_2824 GABA permease K11735 gabP; GABA permease
D PPUBIRD1_2825 GABA permease K11735 gabP; GABA permease
D PPUBIRD1_1435 Amino acid permease-associated region K11735 gabP; GABA permease
D PPUBIRD1_4627 D-alanine/D-serine/glycine permease K11737 cycA; D-serine/D-alanine/glycine transporter
D PPUBIRD1_4819 Amino acid permease-associated region K16234 hutT; histidine transporter
D PPUBIRD1_0703 Amino acid transporter K16235 mmuP; S-methylmethionine transporter
D PPUBIRD1_2035 Amino acid transporter K02205 rocE; arginine/ornithine permease
D PPUBIRD1_1267 Amino acid ABC transporter permease K14052 puuP; putrescine importer
D PPUBIRD1_0361 Amino acid permease-associated region K14052 puuP; putrescine importer
D PPUBIRD1_3094 Amino acid ABC transporter permease K14052 puuP; putrescine importer
D PPUBIRD1_1052 Arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D PPUBIRD1_1053 Arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D PPUBIRD1_0593 Ethanolamine transporter K16238 eat; ethanolamine permease
D PPUBIRD1_4557 Cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF
D PPUBIRD1_1000 Zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family
D PPUBIRD1_3775 Zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family
D PPUBIRD1_2362 mexF; MexF K18299 mexF; multidrug efflux pump
D PPUBIRD1_3588 Uncharacterized transporter HI0895 K18307 mexI; multidrug efflux pump
D PPUBIRD1_4043 Acriflavin resistance protein K18303 mexK; multidrug efflux pump
D PPUBIRD1_4175 arpB; ArpB K18138 acrB; multidrug efflux pump
D PPUBIRD1_0957 Uncharacterized transporter HI0895 K18138 acrB; multidrug efflux pump
D PPUBIRD1_2336 Toluene efflux pump membrane transporter ttgB K18138 acrB; multidrug efflux pump
D PPUBIRD1_4967 Acriflavin resistance protein K21134 triC; multidrug efflux pump
D PPUBIRD1_2208 Multidrug resistance protein mdtB K07788 mdtB; multidrug efflux pump
D PPUBIRD1_2209 Multidrug resistance protein mdtC K07789 mdtC; multidrug efflux pump
D PPUBIRD1_4713 Small multidrug resistance protein K03297 emrE; small multidrug resistance pump
D PPUBIRD1_3916 Small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D PPUBIRD1_2863 Hypothetical protein, conserved K15268 eamA; O-acetylserine/cysteine efflux transporter
D PPUBIRD1_3414 EamA family protein K11939 rhtA; inner membrane transporter RhtA
D PPUBIRD1_0394 rarD; RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D PPUBIRD1_2181 Hypothetical protein, conserved K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D PPUBIRD1_2989 Gluconate transporter K13629 dsdX; D-serine transporter
D PPUBIRD1_2238 Na+/H+ antiporter NhaC K07084 yuiF; putative amino acid transporter
D PPUBIRD1_2372 gntP; GntP K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D PPUBIRD1_0697 Gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D PPUBIRD1_4438 lctP; LctP K03303 lutP; lactate permease
D PPUBIRD1_2981 BCCT family transporter K05020 opuD; glycine betaine transporter
D PPUBIRD1_1836 Choline/carnitine/betaine transporter family protein K02168 betT; choline/glycine/proline betaine transport protein
D PPUBIRD1_0254 Choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein
D PPUBIRD1_4850 Choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein
D PPUBIRD1_0979 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter
D PPUBIRD1_4189 Phosphate transporter K16322 pit; low-affinity inorganic phosphate transporter
D PPUBIRD1_4729 putP; PutP K11928 putP; sodium/proline symporter
D PPUBIRD1_3874 actP; ActP K14393 actP; cation/acetate symporter
D PPUBIRD1_2500 Acetate permease K14393 actP; cation/acetate symporter
D PPUBIRD1_2430 Sodium:dicarboxylate symporter K11102 gltP; proton glutamate symport protein
D PPUBIRD1_0166 gltP; GltP K11102 gltP; proton glutamate symport protein
D PPUBIRD1_3399 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D PPUBIRD1_1229 dctA; DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D PPUBIRD1_3594 dctM; DctM K11103 dctA; aerobic C4-dicarboxylate transport protein
D PPUBIRD1_3239 Serine/threonine transporter sstT K07862 sstT; serine/threonine transporter
D PPUBIRD1_1046 Sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D PPUBIRD1_1835 Na(+)/H(+) antiporter nhaA 2 K03313 nhaA; Na+:H+ antiporter, NhaA family
D PPUBIRD1_1178 nhaA; NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D PPUBIRD1_1789 nhaB; NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family
D PPUBIRD1_4028 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D PPUBIRD1_4855 CvrA-like cell volume regulation protein K11105 cvrA; potassium/hydrogen antiporter
D PPUBIRD1_4759 Sodium/hydrogen exchanger K03316 nhaP; Na+:H+ antiporter
D PPUBIRD1_5040 Potassium efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D PPUBIRD1_0756 Potassium efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D PPUBIRD1_0024 Sodium/hydrogen exchanger K26735 KEA4_5_6; K+:H+ antiporter
D PPUBIRD1_1840 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D PPUBIRD1_1392 TrkH family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D PPUBIRD1_0094 trkA; TrkA K03499 trkA; trk/ktr system potassium uptake protein
D PPUBIRD1_2551 codB; CodB K10974 codB; cytosine permease
D PPUBIRD1_2145 Permease for cytosine/purine, uracil, thiamine, allantoin K23467 tgnP; trigonelline permease
D PPUBIRD1_0791 uraA; UraA K02824 uraA; uracil permease
D PPUBIRD1_4339 Uracil-xanthine permease K24206 uacT; uric acid transporter
D PPUBIRD1_1565 Xanthine/uracil permease family protein K24206 uacT; uric acid transporter
D PPUBIRD1_1822 Uracil-xanthine permease K16345 xanP; xanthine permease XanP
D PPUBIRD1_1571 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D PPUBIRD1_4349 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D PPUBIRD1_2204 Aromatic amino acid permease K03837 sdaC; serine transporter
D PPUBIRD1_2566 benE; BenE K05782 benE; benzoate membrane transport protein
D PPUBIRD1_3616 benE_2; BenE_2 K05782 benE; benzoate membrane transport protein
D PPUBIRD1_3792 Benzoate transporter K05782 benE; benzoate membrane transport protein
D PPUBIRD1_3120 Chromate transporter K07240 chrA; chromate transporter
D PPUBIRD1_0104 Sulphate transporter K03321 TC.SULP; sulfate permease, SulP family
D PPUBIRD1_1738 Sulphate transporter K03321 TC.SULP; sulfate permease, SulP family
D PPUBIRD1_0174 Sodium-dependent inorganic phosphate (Pi) transporter K03324 yjbB; phosphate:Na+ symporter
D PPUBIRD1_2955 arsB; ArsB K03893 arsB; arsenical pump membrane protein
D PPUBIRD1_0710 Bile acid/Na+ symporter family protein K03325 ACR3; arsenite transporter
D PPUBIRD1_3424 Probable K(+)/H(+) antiporter subunit A/B K05559 phaA; multicomponent K+:H+ antiporter subunit A
D PPUBIRD1_3425 Putative monovalent cation/H+ antiporter subunit C K05560 phaC; multicomponent K+:H+ antiporter subunit C
D PPUBIRD1_3426 Putative monovalent cation/H+ antiporter subunit D K05561 phaD; multicomponent K+:H+ antiporter subunit D
D PPUBIRD1_3427 Putative monovalent cation/H+ antiporter subunit E K05562 phaE; multicomponent K+:H+ antiporter subunit E
D PPUBIRD1_3428 Putative monovalent cation/H+ antiporter subunit F K05563 phaF; multicomponent K+:H+ antiporter subunit F
D PPUBIRD1_3429 Putative monovalent cation/H+ antiporter subunit G K05564 phaG; multicomponent K+:H+ antiporter subunit G
D PPUBIRD1_0652 Integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D PPUBIRD1_2233 Auxin efflux carrier K13936 mdcF; malonate transporter and related proteins
D PPUBIRD1_2634 Auxin efflux carrier K24180 mleP; malate permease and related proteins
D PPUBIRD1_0977 Auxin efflux carrier K24180 mleP; malate permease and related proteins
D PPUBIRD1_1236 Probable potassium transport system protein kup K03549 kup; KUP system potassium uptake protein
D PPUBIRD1_0967 Amino acid transporter LysE K06895 lysE; L-lysine exporter family protein LysE/ArgO
D PPUBIRD1_0227 lysE; LysE K05834 rhtB; homoserine/homoserine lactone efflux protein
D PPUBIRD1_2740 Lysine exporter protein LysE/YggA K05834 rhtB; homoserine/homoserine lactone efflux protein
D PPUBIRD1_4443 tep; Tep K05834 rhtB; homoserine/homoserine lactone efflux protein
D PPUBIRD1_2229 Amino acid transporter LysE K05834 rhtB; homoserine/homoserine lactone efflux protein
D PPUBIRD1_2652 Lysine exporter protein LysE/YggA K05834 rhtB; homoserine/homoserine lactone efflux protein
D PPUBIRD1_2163 Lysine exporter protein LysE/YggA K05834 rhtB; homoserine/homoserine lactone efflux protein
D PPUBIRD1_2654 Lysine exporter protein LysE/YggA K05835 rhtC; threonine efflux protein
D PPUBIRD1_0740 Amino acid transporter LysE K05835 rhtC; threonine efflux protein
D PPUBIRD1_1286 Amino acid transporter LysE K11250 leuE; leucine efflux protein
D PPUBIRD1_2738 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D PPUBIRD1_3299 azlC; AzlC K26605 azlC; branched chain amino acid efflux pump
D PPUBIRD1_3300 Branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D PPUBIRD1_2739 Branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D PPUBIRD1_4141 Hypothetical protein, conserved K07793 tctA; putative tricarboxylic transport membrane protein
D PPUBIRD1_4140 Tricarboxylate transport protein TctB, putative K07794 tctB; putative tricarboxylic transport membrane protein
D PPUBIRD1_4139 Hypothetical protein, conserved K07795 tctC; putative tricarboxylic transport membrane protein
D PPUBIRD1_1272 Hypothetical protein, conserved K03548 perM; putative permease
D PPUBIRD1_4609 MarC membrane protein K05595 marC; multiple antibiotic resistance protein
D PPUBIRD1_4227 Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D PPUBIRD1_0807 Hypothetical protein, conserved K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D PPUBIRD1_0209 Cytochrome c family protein K07243 FTR; high-affinity iron transporter
D PPUBIRD1_4337 cstA; CstA K23676 btsT; pyruvate/proton symporter
D PPUBIRD1_4782 TonB family protein K03832 tonB; periplasmic protein TonB
D PPUBIRD1_5101 tonB; TonB K03832 tonB; periplasmic protein TonB
D PPUBIRD1_1261 oprL; OprL K03640 pal; peptidoglycan-associated lipoprotein
D PPUBIRD1_1260 tolB; TolB K03641 tolB; TolB protein
D PPUBIRD1_3693 Secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_4289 Secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_3585 Multidrug efflux MFS membrane fusion protein, putative K03543 emrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_2245 emrA; EmrA K03543 emrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_0849 HlyD family type I secretion membrane fusion protein K12542 lapC; membrane fusion protein, adhesin transport system
D PPUBIRD1_0196 HlyD family type I secretion membrane fusion protein K12542 lapC; membrane fusion protein, adhesin transport system
D PPUBIRD1_2363 mexE; MexE K18298 mexE; membrane fusion protein, multidrug efflux system
D PPUBIRD1_3589 RND family efflux transporter MFP subunit K18306 mexH; membrane fusion protein, multidrug efflux system
D PPUBIRD1_4044 Efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D PPUBIRD1_4174 ttgA; TtgA K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_2337 Efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_0958 RND efflux membrane fusion protein-related protein K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_4969 Efflux transporter, RND family, MFP subunit K21136 triA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_4968 RND efflux transporter K21137 triB; membrane fusion protein, multidrug efflux system
D PPUBIRD1_2207 Efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_1641 Efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D PPUBIRD1_2605 Protein-tyrosine kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D PPUBIRD1_2606 Lipopolysaccharide biosynthesis protein K25590 epsF; protein tyrosine kinase modulator
D PPUBIRD1_2875 Nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D PPUBIRD1_1529 Cytochrome c-type biogenesis protein ccmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D PPUBIRD1_2532 mgtC; MgtC K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D PPUBIRD1_2253 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D PPUBIRD1_1570 Transthyretin family protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 02044 Secretion system [BR:ppb02044]
D PPUBIRD1_4710 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D PPUBIRD1_0850 ABC transporter related protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D PPUBIRD1_0197 Toxin secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D PPUBIRD1_0849 HlyD family type I secretion membrane fusion protein K12542 lapC; membrane fusion protein, adhesin transport system
D PPUBIRD1_0196 HlyD family type I secretion membrane fusion protein K12542 lapC; membrane fusion protein, adhesin transport system
D PPUBIRD1_1380 TolC family type I secretion outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system
D PPUBIRD1_0851 TolC family type I secretion outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system
D PPUBIRD1_1095 xcpP; XcpP K02452 gspC; general secretion pathway protein C
D PPUBIRD1_1096 General secretion pathway protein D K02453 gspD; general secretion pathway protein D
D PPUBIRD1_2315 Type II and III secretion system protein K02453 gspD; general secretion pathway protein D
D PPUBIRD1_4985 Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PPUBIRD1_1097 Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PPUBIRD1_2310 Type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D PPUBIRD1_2364 Type II secretion system protein K02455 gspF; general secretion pathway protein F
D PPUBIRD1_1098 xcpS; XcpS K02455 gspF; general secretion pathway protein F
D PPUBIRD1_2365 xcpT; XcpT K02456 gspG; general secretion pathway protein G
D PPUBIRD1_1099 General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D PPUBIRD1_2316 Type II secretory pathway pseudopilin PulG-like protein K02456 gspG; general secretion pathway protein G
D PPUBIRD1_2317 Type II secretion system protein G K02456 gspG; general secretion pathway protein G
D PPUBIRD1_1100 General secretion pathway protein H K02457 gspH; general secretion pathway protein H
D PPUBIRD1_1101 xcpV; XcpV K02458 gspI; general secretion pathway protein I
D PPUBIRD1_1102 Hypothetical protein, conserved K02459 gspJ; general secretion pathway protein J
D PPUBIRD1_1092 General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D PPUBIRD1_1103 xcpY; XcpY K02461 gspL; general secretion pathway protein L
D PPUBIRD1_1105 Hypothetical protein, conserved K02463 gspN; general secretion pathway protein N
D PPUBIRD1_0685 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PPUBIRD1_0687 Fimbrial protein pilin K02650 pilA; type IV pilus assembly protein PilA
D PPUBIRD1_0686 pilC; PilC K02653 pilC; type IV pilus assembly protein PilC
D PPUBIRD1_0662 pilE; PilE K02655 pilE; type IV pilus assembly protein PilE
D PPUBIRD1_0902 pilF; PilF K02656 pilF; type IV pilus assembly protein PilF
D PPUBIRD1_4779 pilG; PilG K02657 pilG; twitching motility two-component system response regulator PilG
D PPUBIRD1_4778 Response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH
D PPUBIRD1_4777 Putative CheW protein K02659 pilI; twitching motility protein PilI
D PPUBIRD1_4776 Protein pilJ K02660 pilJ; twitching motility protein PilJ
D PPUBIRD1_4872 Type IV pili biogenesis protein PilM, putative K02662 pilM; type IV pilus assembly protein PilM
D PPUBIRD1_4871 pilN; PilN K02663 pilN; type IV pilus assembly protein PilN
D PPUBIRD1_4870 Type IV pili biogenesis protein K23985 pilOP; type IV pilus assembly protein PilOP
D PPUBIRD1_4869 pilQ; PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D PPUBIRD1_4882 Twitching motility protein K02669 pilT; twitching motility protein PilT
D PPUBIRD1_0660 Hypothetical protein, conserved K02672 pilW; type IV pilus assembly protein PilW
D PPUBIRD1_0661 Hypothetical protein, conserved K02673 pilX; type IV pilus assembly protein PilX
D PPUBIRD1_0658 Type IV pili biogenesis protein FimT, putative K08084 fimT; type IV fimbrial biogenesis protein FimT
D PPUBIRD1_3677 Peptidoglycan-binding LysM K08086 fimV; pilus assembly protein FimV
D PPUBIRD1_0625 Hypothetical protein, conserved K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D PPUBIRD1_4885 Hypothetical protein, conserved K02221 yggT; YggT family protein
D PPUBIRD1_3799 Helix-hairpin-helix repeat-containing competence protein ComEA K02237 comEA; competence protein ComEA
D PPUBIRD1_3727 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D PPUBIRD1_1507 flhA; FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D PPUBIRD1_1506 flhB; FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D PPUBIRD1_1522 Flagellar protein FhlB-like protein K04061 flhB2; flagellar biosynthesis protein
D PPUBIRD1_1490 fliF; FliF K02409 fliF; flagellar M-ring protein FliF
D PPUBIRD1_1492 fliH; FliH K02411 fliH; flagellar assembly protein FliH
D PPUBIRD1_1493 fliI; FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D PPUBIRD1_1501 fliN; FliN K02417 fliN; flagellar motor switch protein FliN
D PPUBIRD1_1502 fliO; FliO K02418 fliO; flagellar protein FliO/FliZ
D PPUBIRD1_1503 fliP; FliP K02419 fliP; flagellar biosynthesis protein FliP
D PPUBIRD1_1504 fliQ; FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D PPUBIRD1_1505 fliR; FliR K02421 fliR; flagellar biosynthesis protein FliR
D PPUBIRD1_4090 Thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D PPUBIRD1_4493 Type IV secretion system protein DotB K12203 dotB; defect in organelle trafficking protein DotB [EC:7.2.4.8]
D PPUBIRD1_4494 Putative type IV secretion system protein DotC K12204 dotC; defect in organelle trafficking protein DotC
D PPUBIRD1_4495 Putative lipoprotein K12205 dotD; defect in organelle trafficking protein DotD
D PPUBIRD1_4499 Putative type IV secretion system protein IcmB/DotO K12206 icmB; intracellular multiplication protein IcmB [EC:7.2.4.8]
D PPUBIRD1_4504 Putative type IV secretion system protein IcmE/DotG K12209 icmE; intracellular multiplication protein IcmE
D PPUBIRD1_4500 Putative type IV secretion system protein IcmJ/DotN K12212 icmJ; intracellular multiplication protein IcmJ
D PPUBIRD1_4505 Putative type IV secretion system protein IcmK/DotH K12213 icmK; intracellular multiplication protein IcmK
D PPUBIRD1_4506 Putative type IV secretion system protein IcmL/DotI K12214 icmL; intracellular multiplication protein IcmL
D PPUBIRD1_4498 Putative type IV secretion system protein IcmO/DotL K12217 icmO; intracellular multiplication protein IcmO [EC:7.2.4.8]
D PPUBIRD1_4491 Type IV secretion system protein IcmP/DotM K12218 icmP; intracellular multiplication protein IcmP
D PPUBIRD1_0456 Hypothetical protein, conserved K12686 apeE; outer membrane lipase/esterase
D PPUBIRD1_4110 Filamentous hemagglutinin outer membrane protein K11016 shlA; hemolysin
D PPUBIRD1_3063 ImcF domain-containing protein K11891 impL; type VI secretion system protein ImpL
D PPUBIRD1_3067 Hypothetical protein, conserved K11900 impC; type VI secretion system protein ImpC
D PPUBIRD1_3066 Hypothetical protein, conserved K11901 impB; type VI secretion system protein ImpB
D PPUBIRD1_3064 ImpA domain-containing protein K11910 vasJ; type VI secretion system protein VasJ
D PPUBIRD1_3065 Hypothetical protein, conserved K11909 vasI; type VI secretion system protein VasI
D PPUBIRD1_3662 Fimbrial protein-like protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D PPUBIRD1_3326 csuC; CsuC K07346 fimC; fimbrial chaperone protein
D PPUBIRD1_3325 csuD; CsuD K07347 fimD; outer membrane usher protein
D PPUBIRD1_3664 Fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D PPUBIRD1_3324 csuE; CsuE K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3327 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3328 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3329 Spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3330 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3871 Hypothetical protein, conserved K21965 ecpB; Mat/Ecp fimbriae periplasmic chaperone
D PPUBIRD1_3872 Hypothetical protein, conserved K21966 ecpC; Mat/Ecp fimbriae outer membrane usher protein
D PPUBIRD1_2392 Curlin-associated protein K04335 csgB; minor curlin subunit
D PPUBIRD1_2319 Curli assembly protein CsgE K04337 csgE; curli production assembly/transport component CsgE
D PPUBIRD1_2320 csmF; CsmF K04338 csgF; curli production assembly/transport component CsgF
D PPUBIRD1_2321 Curli production assembly/transport component CsgG K06214 csgG; curli production assembly/transport component CsgG
D PPUBIRD1_4217 secA_2; SecA_2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PPUBIRD1_4841 secB; SecB K03071 secB; preprotein translocase subunit SecB
D PPUBIRD1_0886 secD; SecD K03072 secD; preprotein translocase subunit SecD
D PPUBIRD1_0478 secE; SecE K03073 secE; preprotein translocase subunit SecE
D PPUBIRD1_0887 secF; SecF K03074 secF; preprotein translocase subunit SecF
D PPUBIRD1_0511 secY; SecY K03076 secY; preprotein translocase subunit SecY
D PPUBIRD1_4098 ffh; Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PPUBIRD1_4900 Signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PPUBIRD1_0885 yajC; YajC K03210 yajC; preprotein translocase subunit YajC
D PPUBIRD1_0071 oxaA; OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PPUBIRD1_4804 tatA_2; TatA_2 K03116 tatA; sec-independent protein translocase protein TatA
D PPUBIRD1_1091 tatA; TatA K03116 tatA; sec-independent protein translocase protein TatA
D PPUBIRD1_4805 tatB; TatB K03117 tatB; sec-independent protein translocase protein TatB
D PPUBIRD1_1090 Twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D PPUBIRD1_4806 tatC; TatC K03118 tatC; sec-independent protein translocase protein TatC
D PPUBIRD1_1089 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:ppb02042]
D PPUBIRD1_5114 Hypothetical protein, conserved K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PPUBIRD1_4100 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PPUBIRD1_4110 Filamentous hemagglutinin outer membrane protein K11016 shlA; hemolysin
D PPUBIRD1_4773 Hemolysin III family channel protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:ppb02022]
D PPUBIRD1_5113 Phosphate regulon sensor protein phoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PPUBIRD1_5112 phoB; PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D PPUBIRD1_1228 phoQ; PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D PPUBIRD1_1227 Two component transcriptional regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D PPUBIRD1_0274 envZ; EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D PPUBIRD1_0273 ompR; OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D PPUBIRD1_1223 Integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D PPUBIRD1_1222 Two component transcriptional regulator K07661 rstA; two-component system, OmpR family, response regulator RstA
D PPUBIRD1_1396 Winged helix family two component transcriptional regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D PPUBIRD1_0365 Sensory histidine kinase CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D PPUBIRD1_0364 DNA-binding response regulator CreB K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D PPUBIRD1_3497 Heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D PPUBIRD1_3496 Two component heavy metal response transcriptional regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D PPUBIRD1_2958 Sensor histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D PPUBIRD1_1625 Integral membrane sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D PPUBIRD1_2959 DNA-binding response regulator K07666 qseB; two-component system, OmpR family, response regulator QseB
D PPUBIRD1_1624 Winged helix family two component transcriptional regulator K07666 qseB; two-component system, OmpR family, response regulator QseB
D PPUBIRD1_1694 kdpD; KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D PPUBIRD1_1695 Two component transcriptional regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D PPUBIRD1_4136 Integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D PPUBIRD1_4137 tctD; TctD K07774 tctD; two-component system, OmpR family, response regulator TctD
D PPUBIRD1_0573 pfeS; PfeS K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3]
D PPUBIRD1_3964 Integral membrane sensor signal transduction histidine kinase K19609 pfeS; two-component system, OmpR family, sensor histidine kinase PfeS [EC:2.7.13.3]
D PPUBIRD1_3965 Two component transcriptional regulator K19610 pfeR; two-component system, OmpR family, response regulator PfeR
D PPUBIRD1_0574 Two component transcriptional regulator K19610 pfeR; two-component system, OmpR family, response regulator PfeR
D PPUBIRD1_2339 Integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PPUBIRD1_2409 Integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PPUBIRD1_0299 gltR; GltR K02483 K02483; two-component system, OmpR family, response regulator
D PPUBIRD1_2338 Winged helix family two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D PPUBIRD1_2829 Winged helix family two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D PPUBIRD1_3281 ompR_2; OmpR_2 K02483 K02483; two-component system, OmpR family, response regulator
D PPUBIRD1_1062 gltR_2; GltR_2 K02483 K02483; two-component system, OmpR family, response regulator
D PPUBIRD1_2408 Two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D PPUBIRD1_3340 Winged helix family two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D PPUBIRD1_3005 Integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D PPUBIRD1_3658 Histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PPUBIRD1_3660 Multi-sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D PPUBIRD1_3661 Two component LuxR family transcriptional regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D PPUBIRD1_3966 gacS; GacS K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D PPUBIRD1_1751 gacA; GacA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D PPUBIRD1_3004 Two component LuxR family transcriptional regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D PPUBIRD1_2376 Hpt sensor hybrid histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D PPUBIRD1_3552 Virulence sensor protein bvgS K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D PPUBIRD1_2377 LuxR family DNA-binding response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D PPUBIRD1_3551 Two component LuxR family transcriptional regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D PPUBIRD1_1140 Two component LuxR family transcriptional regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D PPUBIRD1_0624 LuxR family DNA-binding response regulator K27077 pprB; two-component system, NarL family, response regulator PprB
D PPUBIRD1_0215 pprA; PprA K08083 algR; two-component system, LytTR family, response regulator AlgR
D PPUBIRD1_4837 ntrB; NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D PPUBIRD1_4838 ntrC; NtrC K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D PPUBIRD1_4397 Putative two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D PPUBIRD1_4157 Integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D PPUBIRD1_0291 Integral membrane sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D PPUBIRD1_4158 Two component, sigma54 specific, Fis family transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D PPUBIRD1_0290 Two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D PPUBIRD1_0160 kinB; KinB K11383 kinB; two-component system, NtrC family, sensor histidine kinase KinB [EC:2.7.13.3]
D PPUBIRD1_0161 algB; AlgB K11384 algB; two-component system, NtrC family, response regulator AlgB
D PPUBIRD1_2730 Sensor histidine kinase/response regulator K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D PPUBIRD1_1513 cheA; CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PPUBIRD1_1511 Response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PPUBIRD1_1514 cheB; CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PPUBIRD1_2003 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PPUBIRD1_0848 cheV; CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_1449 cheV_2; CheV_2 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_3524 cheV_3; CheV_3 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_4775 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D PPUBIRD1_4779 pilG; PilG K02657 pilG; twitching motility two-component system response regulator PilG
D PPUBIRD1_4778 Response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH
D PPUBIRD1_4067 CheA signal transduction histidine kinase K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE
D PPUBIRD1_4065 Response regulator/GGDEF domain-containing protein K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65]
D PPUBIRD1_4066 Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61]
D PPUBIRD1_3331 Multi-sensor signal transduction histidine kinase K11354 cph1; two-component system, chemotaxis family, sensor kinase Cph1 [EC:2.7.13.3]
D PPUBIRD1_1487 fleS; FleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D PPUBIRD1_1488 Two component, sigma54 specific, Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC
D PPUBIRD1_1117 Integral membrane sensor signal transduction histidine kinase K17060 aauS; two-component system, sensor histidine kinase AauS [EC:2.7.13.3]
D PPUBIRD1_1116 Two component, sigma54 specific, transcriptional regulator, Fis family K17061 aauR; two-component system, response regulator AauR
D PPUBIRD1_0938 Integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D PPUBIRD1_0939 Two component Fis family transcriptional regulator K15012 regA; two-component system, response regulator RegA
D PPUBIRD1_3740 Histidine kinase K20973 sagS; two-component system, sensor histidine kinase SagS [EC:2.7.13.3]
D PPUBIRD1_1679 Integral membrane sensor hybrid histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
D PPUBIRD1_3012 PAS/PAC sensor hybrid histidine kinase K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3]
D PPUBIRD1_1497 Hpt protein K20976 hptB; histidine phosphotransfer protein HptB
D PPUBIRD1_1496 Response regulator receiver protein K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator
D PPUBIRD1_3558 Nitrate-binding protein NasS, putative K22067 nasS; two-component system, oxyanion-binding sensor
D PPUBIRD1_3559 nasT; NasT K07183 nasT; two-component system, response regulator / RNA-binding antiterminator
D PPUBIRD1_4564 Integral membrane sensor signal transduction histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS
D PPUBIRD1_4608 Integral membrane sensor hybrid histidine kinase K20972 retS; two-component system, sensor histidine kinase RetS
C 02035 Bacterial motility proteins [BR:ppb02035]
D PPUBIRD1_1513 cheA; CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D PPUBIRD1_1518 hypothetical protein K03408 cheW; purine-binding chemotaxis protein CheW
D PPUBIRD1_1519 cheW; CheW K03408 cheW; purine-binding chemotaxis protein CheW
D PPUBIRD1_2002 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PPUBIRD1_1450 cheR; CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D PPUBIRD1_1514 cheB; CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PPUBIRD1_2003 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D PPUBIRD1_1511 Response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D PPUBIRD1_1512 cheZ; CheZ K03414 cheZ; chemotaxis protein CheZ
D PPUBIRD1_0848 cheV; CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_1449 cheV_2; CheV_2 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_3524 cheV_3; CheV_3 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D PPUBIRD1_0634 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2375 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4191 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3405 Methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_0824 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3533 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4354 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2874 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3793 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_0347 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_0350 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2096 Chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_1266 Methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2146 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_3037 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_2237 Methyl-accepting chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4808 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_4809 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D PPUBIRD1_1378 Methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor
D PPUBIRD1_3397 Methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor
D PPUBIRD1_3540 Methyl-accepting chemotaxis sensory transducer K03776 aer; aerotaxis receptor
D PPUBIRD1_1492 fliH; FliH K02411 fliH; flagellar assembly protein FliH
D PPUBIRD1_1493 fliI; FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D PPUBIRD1_1494 fliJ; FliJ K02413 fliJ; flagellar protein FliJ
D PPUBIRD1_1502 fliO; FliO K02418 fliO; flagellar protein FliO/FliZ
D PPUBIRD1_1503 fliP; FliP K02419 fliP; flagellar biosynthesis protein FliP
D PPUBIRD1_1504 fliQ; FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D PPUBIRD1_1505 fliR; FliR K02421 fliR; flagellar biosynthesis protein FliR
D PPUBIRD1_1507 flhA; FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D PPUBIRD1_1506 flhB; FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D PPUBIRD1_1491 fliG; FliG K02410 fliG; flagellar motor switch protein FliG
D PPUBIRD1_1500 fliM; FliM K02416 fliM; flagellar motor switch protein FliM
D PPUBIRD1_1501 fliN; FliN K02417 fliN; flagellar motor switch protein FliN
D PPUBIRD1_1490 fliF; FliF K02409 fliF; flagellar M-ring protein FliF
D PPUBIRD1_1459 flgI; FlgI K02394 flgI; flagellar P-ring protein FlgI
D PPUBIRD1_1448 flgA; FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D PPUBIRD1_1458 flgH; FlgH K02393 flgH; flagellar L-ring protein FlgH
D PPUBIRD1_1499 fliL; FliL K02415 fliL; flagellar protein FliL
D PPUBIRD1_5005 Flagellar basal body-associated protein FliL-like protein K02415 fliL; flagellar protein FliL
D PPUBIRD1_1489 fliE; FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D PPUBIRD1_1498 fliK; FliK K02414 fliK; flagellar hook-length control protein FliK
D PPUBIRD1_1451 flgB; FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D PPUBIRD1_1452 flgC; FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D PPUBIRD1_1453 flgD; FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D PPUBIRD1_1456 Flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D PPUBIRD1_1457 flgG; FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D PPUBIRD1_1460 flgJ; FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D PPUBIRD1_1454 flgE; FlgE K02390 flgE; flagellar hook protein FlgE
D PPUBIRD1_1461 flgK; FlgK K02396 flgK; flagellar hook-associated protein 1
D PPUBIRD1_1462 flgL; FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D PPUBIRD1_1446 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D PPUBIRD1_1137 OmpA/MotB domain-containing protein K21218 motY; sodium-type flagellar protein MotY
D PPUBIRD1_1465 Flagellin K02406 fliC; flagellin
D PPUBIRD1_1467 Flagellar hook-associated 2 domain-containing protein K02407 fliD; flagellar hook-associated protein 2
D PPUBIRD1_1468 fliS; FliS K02422 fliS; flagellar secretion chaperone FliS
D PPUBIRD1_1469 Hypothetical protein, conserved K02423 fliT; flagellar protein FliT
D PPUBIRD1_1510 fliA; FliA K02405 fliA; RNA polymerase sigma factor FliA
D PPUBIRD1_4692 Flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D PPUBIRD1_1515 motC; MotC K02556 motA; chemotaxis protein MotA
D PPUBIRD1_4691 motB; MotB K02557 motB; chemotaxis protein MotB
D PPUBIRD1_1516 Flagellar motor protein MotD K02557 motB; chemotaxis protein MotB
D PPUBIRD1_1470 fleQ; FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PPUBIRD1_1487 fleS; FleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D PPUBIRD1_1488 Two component, sigma54 specific, Fis family transcriptional regulator K10943 flrC; two-component system, response regulator FlrC
D PPUBIRD1_0251 Cystine transporter subunit K02424 tcyA; L-cystine transport system substrate-binding protein
D PPUBIRD1_4948 Hypothetical protein, conserved K02424 tcyA; L-cystine transport system substrate-binding protein
D PPUBIRD1_1447 flgM; FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D PPUBIRD1_1466 Flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG
D PPUBIRD1_1508 flhF; FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D PPUBIRD1_1509 fleN; FleN K04562 flhG; flagellar biosynthesis protein FlhG
D PPUBIRD1_4779 pilG; PilG K02657 pilG; twitching motility two-component system response regulator PilG
D PPUBIRD1_4778 Response regulator receiver protein K02658 pilH; twitching motility two-component system response regulator PilH
D PPUBIRD1_4777 Putative CheW protein K02659 pilI; twitching motility protein PilI
D PPUBIRD1_4776 Protein pilJ K02660 pilJ; twitching motility protein PilJ
D PPUBIRD1_4775 CheA signal transduction histidine kinase K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D PPUBIRD1_4882 Twitching motility protein K02669 pilT; twitching motility protein PilT
D PPUBIRD1_4774 CheW domain protein K06598 chpC; chemosensory pili system protein ChpC
D PPUBIRD1_0687 Fimbrial protein pilin K02650 pilA; type IV pilus assembly protein PilA
D PPUBIRD1_0686 pilC; PilC K02653 pilC; type IV pilus assembly protein PilC
D PPUBIRD1_0685 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PPUBIRD1_0902 pilF; PilF K02656 pilF; type IV pilus assembly protein PilF
D PPUBIRD1_4869 pilQ; PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D PPUBIRD1_4870 Type IV pili biogenesis protein K23985 pilOP; type IV pilus assembly protein PilOP
D PPUBIRD1_4871 pilN; PilN K02663 pilN; type IV pilus assembly protein PilN
D PPUBIRD1_4872 Type IV pili biogenesis protein PilM, putative K02662 pilM; type IV pilus assembly protein PilM
D PPUBIRD1_0660 Hypothetical protein, conserved K02672 pilW; type IV pilus assembly protein PilW
D PPUBIRD1_0661 Hypothetical protein, conserved K02673 pilX; type IV pilus assembly protein PilX
D PPUBIRD1_0662 pilE; PilE K02655 pilE; type IV pilus assembly protein PilE
D PPUBIRD1_0625 Hypothetical protein, conserved K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D PPUBIRD1_3662 Fimbrial protein-like protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D PPUBIRD1_3326 csuC; CsuC K07346 fimC; fimbrial chaperone protein
D PPUBIRD1_3325 csuD; CsuD K07347 fimD; outer membrane usher protein
D PPUBIRD1_3664 Fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D PPUBIRD1_3324 csuE; CsuE K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3327 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3328 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3329 Spore coat U domain-containing protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D PPUBIRD1_3330 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:ppb04812]
D PPUBIRD1_0985 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D PPUBIRD1_4220 ftsZ; FtsZ K03531 ftsZ; cell division protein FtsZ
D PPUBIRD1_4222 ftsA; FtsA K03590 ftsA; cell division protein FtsA
D PPUBIRD1_3883 minC; MinC K03610 minC; septum site-determining protein MinC
D PPUBIRD1_3884 minD; MinD K03609 minD; septum site-determining protein MinD
D PPUBIRD1_3885 minE; MinE K03608 minE; cell division topological specificity factor
D PPUBIRD1_1517 ParA family protein K03496 parA; chromosome partitioning protein
D PPUBIRD1_3275 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D PPUBIRD1_0067 ParA-like partition protein K03496 parA; chromosome partitioning protein
D PPUBIRD1_4859 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D PPUBIRD1_2124 Hypothetical protein, conserved K03496 parA; chromosome partitioning protein
D PPUBIRD1_0066 parB; ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PPUBIRD1_2742 Putative ParB-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:ppb04147]
D PPUBIRD1_1673 htpG; HtpG K04079 HSP90A; molecular chaperone HtpG
D PPUBIRD1_4003 eno; Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PPUBIRD1_3505 gap_2; Gap_2 K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PPUBIRD1_1059 gap; Gap K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PPUBIRD1_4747 pgk; Pgk K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PPUBIRD1_1555 pykF; PykF K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PPUBIRD1_4200 pykA; PykA K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PPUBIRD1_1358 ppiA; PpiA K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PPUBIRD1_0338 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PPUBIRD1_1637 Dipeptidase, putative K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PPUBIRD1_2980 Peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PPUBIRD1_1134 Anti-oxidant AhpCTSA family protein K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D PPUBIRD1_4201 groEL; GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PPUBIRD1_4429 dnaK; DnaK K04043 dnaK; molecular chaperone DnaK
D PPUBIRD1_4402 pgi; Pgi K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PPUBIRD1_1081 guaB; GuaB K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PPUBIRD1_0477 tuf; Tuf K02358 tuf; elongation factor Tu
D PPUBIRD1_0489 tuf_2; Tuf_2 K02358 tuf; elongation factor Tu
D PPUBIRD1_0465 Histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PPUBIRD1_2857 Bile acid/Na+ symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D PPUBIRD1_1348 fadD2; FadD2 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_1349 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_2090 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PPUBIRD1_0632 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3436 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_2008 Beta-ketothiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4333 Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_3599 atoB; AtoB K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D PPUBIRD1_4761 Adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PPUBIRD1_4053 adk; Adk K00939 adk; adenylate kinase [EC:2.7.4.3]
D PPUBIRD1_1590 apt; Apt K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PPUBIRD1_0213 arlY; ArlY K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PPUBIRD1_1138 argG; ArgG K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PPUBIRD1_1304 Cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D PPUBIRD1_3125 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D PPUBIRD1_1784 D-hydantoinase/dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D PPUBIRD1_4315 Fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D PPUBIRD1_4829 fbp; Fbp K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D PPUBIRD1_1766 glgB; GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PPUBIRD1_1125 glpK; GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D PPUBIRD1_1443 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4978 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4979 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_5092 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_2584 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_3473 Glutamine synthetase, putative K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_1351 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_4835 glnA; GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PPUBIRD1_2821 hemB; HemB K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PPUBIRD1_2355 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D PPUBIRD1_1410 phhB; PhhB K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D PPUBIRD1_3152 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PPUBIRD1_4946 serA; SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PPUBIRD1_4605 purH; PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PPUBIRD1_1665 lpdG; LpdG K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1438 lpdV; LpdV K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_0036 lpd3; Lpd3 K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PPUBIRD1_1650 Electron transfer flavoprotein alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D PPUBIRD1_0020 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PPUBIRD1_1778 Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PPUBIRD1_1072 zwf; Zwf K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PPUBIRD1_4417 tpiA; TpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PPUBIRD1_1788 Lipocalin family protein K03098 APOD; apolipoprotein D and lipocalin family protein
D PPUBIRD1_4826 Outer membrane lipoprotein Blc, putative K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:ppb02048]
D PPUBIRD1_4449 hsdR; HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D PPUBIRD1_4451 hsdS; HsdS K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D PPUBIRD1_4450 hsdM; HsdM K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D PPUBIRD1_2746 Prophage PSPPH02, adenine modification methytransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D PPUBIRD1_0817 Toxin ChpB K18841 chpB; mRNA interferase ChpB [EC:3.1.-.-]
D PPUBIRD1_0816 PemI-like protein K18842 chpS; antitoxin ChpS
D PPUBIRD1_2910 Hypothetical protein, conserved K19155 yhaV; toxin YhaV [EC:3.1.-.-]
D PPUBIRD1_2909 Transcriptional regulator, AbrB family K19156 prlF; antitoxin PrlF
D PPUBIRD1_1645 Hypothetical protein, conserved K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin
D PPUBIRD1_1646 Cro/CI family transcriptional regulator K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D PPUBIRD1_4220 ftsZ; FtsZ K03531 ftsZ; cell division protein FtsZ
D PPUBIRD1_0985 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D PPUBIRD1_4699 parC; ParC K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PPUBIRD1_4702 parE; ParE K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D PPUBIRD1_3692 gltX; GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PPUBIRD1_4132 Hypothetical protein, conserved K19168 cptA; toxin CptA
D PPUBIRD1_4133 Hypothetical protein, conserved K09159 cptB; antitoxin CptB
D PPUBIRD1_3247 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PPUBIRD1_0893 iscS; IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:ppb04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:ppb04090]
C 01504 Antimicrobial resistance genes [BR:ppb01504]
D PPUBIRD1_4208 Major facilitator transporter K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D PPUBIRD1_1551 Major facilitator transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D PPUBIRD1_3497 Heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D PPUBIRD1_3496 Two component heavy metal response transcriptional regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D PPUBIRD1_2908 ttgS; TtgS K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D PPUBIRD1_3581 LysR family transcriptional regulator K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D PPUBIRD1_2058 LysR family transcriptional regulator K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D PPUBIRD1_1242 oprD; OprD K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D PPUBIRD1_5044 Porin, putative K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D PPUBIRD1_1238 Hypothetical protein, conserved K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D PPUBIRD1_1228 phoQ; PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D PPUBIRD1_1227 Two component transcriptional regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP
D PPUBIRD1_4174 ttgA; TtgA K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_2337 Efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_0958 RND efflux membrane fusion protein-related protein K03585 acrA; membrane fusion protein, multidrug efflux system
D PPUBIRD1_4175 arpB; ArpB K18138 acrB; multidrug efflux pump
D PPUBIRD1_0957 Uncharacterized transporter HI0895 K18138 acrB; multidrug efflux pump
D PPUBIRD1_2336 Toluene efflux pump membrane transporter ttgB K18138 acrB; multidrug efflux pump
D PPUBIRD1_4176 ttgC; TtgC K18139 oprM; outer membrane protein, multidrug efflux system
D PPUBIRD1_1639 RND efflux transporter K18139 oprM; outer membrane protein, multidrug efflux system
D PPUBIRD1_2363 mexE; MexE K18298 mexE; membrane fusion protein, multidrug efflux system
D PPUBIRD1_2362 mexF; MexF K18299 mexF; multidrug efflux pump
D PPUBIRD1_2361 RND efflux system outer membrane lipoprotein K18300 oprN; outer membrane protein, multidrug efflux system
D PPUBIRD1_4045 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D PPUBIRD1_4044 Efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D PPUBIRD1_4043 Acriflavin resistance protein K18303 mexK; multidrug efflux pump
D PPUBIRD1_0635 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PPUBIRD1_2912 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PPUBIRD1_4710 TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein
D PPUBIRD1_2377 LuxR family DNA-binding response regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D PPUBIRD1_3551 Two component LuxR family transcriptional regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
D PPUBIRD1_1140 Two component LuxR family transcriptional regulator K07690 evgA; two-component system, NarL family, response regulator EvgA
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ppb00537]
D PPUBIRD1_0338 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PPUBIRD1_1637 Dipeptidase, putative K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PPUBIRD1_2980 Peptidase M19, renal dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:ppb03100]
D PPUBIRD1_t0039 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PPUBIRD1_t0046 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PPUBIRD1_t0030 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PPUBIRD1_t0006 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PPUBIRD1_t0047 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0064 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0018 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0014 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0016 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0015 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0017 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PPUBIRD1_t0007 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PPUBIRD1_t0023 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PPUBIRD1_t0032 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PPUBIRD1_t0042 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PPUBIRD1_t0044 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PPUBIRD1_t0043 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PPUBIRD1_t0021 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PPUBIRD1_t0051 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PPUBIRD1_t0059 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PPUBIRD1_t0034 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PPUBIRD1_t0036 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PPUBIRD1_t0040 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PPUBIRD1_t0019 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0035 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0037 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0038 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0002 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0024 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PPUBIRD1_t0048 tRNA-His K14226 tRNA-His; tRNA His
D PPUBIRD1_t0050 tRNA-His K14226 tRNA-His; tRNA His
D PPUBIRD1_t0005 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PPUBIRD1_t0045 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PPUBIRD1_t0029 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PPUBIRD1_t0058 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0049 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0027 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0055 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0026 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PPUBIRD1_t0009 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PPUBIRD1_t0011 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PPUBIRD1_t0061 tRNA-Met K14230 tRNA-Met; tRNA Met
D PPUBIRD1_t0028 tRNA-Met K14230 tRNA-Met; tRNA Met
D PPUBIRD1_t0060 tRNA-Met K14230 tRNA-Met; tRNA Met
D PPUBIRD1_t0056 tRNA-Met K14230 tRNA-Met; tRNA Met
D PPUBIRD1_t0057 tRNA-Met K14230 tRNA-Met; tRNA Met
D PPUBIRD1_t0062 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PPUBIRD1_t0054 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PPUBIRD1_t0008 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PPUBIRD1_t0022 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PPUBIRD1_t0033 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PPUBIRD1_t0012 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PPUBIRD1_t0020 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PPUBIRD1_t0013 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PPUBIRD1_t0003 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PPUBIRD1_t0010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PPUBIRD1_t0063 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PPUBIRD1_t0004 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PPUBIRD1_t0001 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PPUBIRD1_t0031 tRNA-Val K14237 tRNA-Val; tRNA Val
D PPUBIRD1_t0041 tRNA-Val K14237 tRNA-Val; tRNA Val
D PPUBIRD1_t0052 tRNA-Val K14237 tRNA-Val; tRNA Val
D PPUBIRD1_t0053 tRNA-Val K14237 tRNA-Val; tRNA Val
D PPUBIRD1_r0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0019 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0022 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0008 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0011 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PPUBIRD1_r0012 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0015 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0018 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0021 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0009 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PPUBIRD1_r0007 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0010 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0016 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0006 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0013 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PPUBIRD1_r0017 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D PPUBIRD1_0331 3-hydroxybutyryl-CoA dehydrogenase K17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108]
D PPUBIRD1_3318 dkgB; DkgB K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D PPUBIRD1_2056 Aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D PPUBIRD1_0605 acoA; AcoA K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D PPUBIRD1_0604 acoB; AcoB K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D PPUBIRD1_3453 Glucose sorbosone dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D PPUBIRD1_2410 Aldo/keto reductase family oxidoreductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D PPUBIRD1_4910 Aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D PPUBIRD1_2140 Aldehyde dehydrogenase K23463 tgnC; (Z)-2-((N-methylformamido)methylene)-5-hydroxybutyrolactone dehydrogenase [EC:1.2.1.-]
D PPUBIRD1_3643 2,4-dienoyl-CoA reductase [NADPH] K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D PPUBIRD1_0414 pqqC; PqqC K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D PPUBIRD1_2167 2Fe-2S iron-sulfur cluster binding domain-containing protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D PPUBIRD1_2166 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D PPUBIRD1_4459 Probable N-methylproline demethylase K22551 hpbA; N-methyl-L-proline demethylase [EC:1.5.3.-]
D PPUBIRD1_1647 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D PPUBIRD1_0788 Hypothetical protein, conserved K18208 RNLS; renalase [EC:1.6.3.5]
D PPUBIRD1_2184 qor; Qor K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D PPUBIRD1_2673 Alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D PPUBIRD1_0101 Alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D PPUBIRD1_5006 Alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D PPUBIRD1_2705 Alcohol dehydrogenase, zinc-containing K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D PPUBIRD1_4357 NAD(P)H dehydrogenase (quinone) K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D PPUBIRD1_2869 acpD; AcpD K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D PPUBIRD1_1362 FMN-dependent NADH-azoreductase 2 K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D PPUBIRD1_3242 ahpF; AhpF K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D PPUBIRD1_1958 Cytochrome c, class I K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2]
D PPUBIRD1_0368 msrA; MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D PPUBIRD1_3742 Peptide methionine sulfoxide reductase msrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D PPUBIRD1_2802 Putative glutathione S-transferase YghU K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D PPUBIRD1_1746 Glutathione S-transferase domain-containing protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D PPUBIRD1_1816 Glutathione S-transferase-like protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D PPUBIRD1_4376 Sulfoxide reductase catalytic subunit yedY K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D PPUBIRD1_3641 Cytochrome B561 K12262 cybB; superoxide oxidase [EC:1.10.3.17]
D PPUBIRD1_2732 Cytochrome c551 peroxidase, putative K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D PPUBIRD1_1793 est; Est K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D PPUBIRD1_5047 Arylesterase, putative K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D PPUBIRD1_1273 Alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PPUBIRD1_2206 Redoxin domain-containing protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PPUBIRD1_0261 lsfA; LsfA K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PPUBIRD1_3243 ahpC; AhpC K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D PPUBIRD1_0117 osmC; OsmC K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D PPUBIRD1_3755 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D PPUBIRD1_2529 Dyp-type peroxidase family protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D PPUBIRD1_3115 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D PPUBIRD1_2385 Pirin domain-containing protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D PPUBIRD1_0913 PKHD-type hydroxylase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D PPUBIRD1_0854 Flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D PPUBIRD1_1985 L-ornithine N5-oxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196]
D PPUBIRD1_2265 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D PPUBIRD1_0245 soxA; SoxA K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D PPUBIRD1_2143 Luciferase family protein K23464 tgnB; flavin-dependent trigonelline monooxygenase, oxygenase component [EC:1.14.14.-]
D PPUBIRD1_2303 Hypothetical protein, conserved K22349 mnxG; manganese oxidase [EC:1.16.3.3]
D PPUBIRD1_3978 fpr; Fpr K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D PPUBIRD1_4342 Oxidoreductase FAD/NAD(P)-binding subunit K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D PPUBIRD1_3971 arsC_2; ArsC_2 K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D PPUBIRD1_2956 arsC; ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D PPUBIRD1_0412 Coenzyme PQQ synthesis protein E K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4]
D PPUBIRD1_3994 pcm; Pcm K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D PPUBIRD1_2940 cfaA; CfaA K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D PPUBIRD1_0035 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D PPUBIRD1_3132 Trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D PPUBIRD1_1478 Hypothetical protein, conserved K05303 K05303; O-methyltransferase [EC:2.1.1.-]
D PPUBIRD1_4727 Carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D PPUBIRD1_4956 Acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D PPUBIRD1_1353 3-oxoacyl-(acyl carrier protein) synthase III K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207]
D PPUBIRD1_4573 lnt; Lnt K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D PPUBIRD1_0974 Phospholipid/glycerol acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270]
D PPUBIRD1_3582 Acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D PPUBIRD1_1233 Acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D PPUBIRD1_4633 GCN5-related N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D PPUBIRD1_1809 aat; Aat K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D PPUBIRD1_1808 Putative arginyl-tRNA--protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D PPUBIRD1_3982 DTW domain-containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D PPUBIRD1_1379 DTW domain-containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D PPUBIRD1_4933 Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D PPUBIRD1_3504 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D PPUBIRD1_0774 Hypothetical protein, conserved K22424 E2.7.3.13; glutamine kinase [EC:2.7.3.13]
D PPUBIRD1_3573 Putative phosphotransferase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D PPUBIRD1_3860 Hypothetical protein, conserved K23753 ppk2; AMP-polyphosphate phosphotransferase [EC:2.7.4.33]
D PPUBIRD1_0374 glnE; GlnE K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D PPUBIRD1_0302 Hypothetical protein, conserved K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65]
D PPUBIRD1_0772 Transferase, putative K01009 E2.7.7.103; L-glutamine-phosphate cytidylyltransferase [EC:2.7.7.103]
D PPUBIRD1_4857 Hypothetical protein, conserved K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D PPUBIRD1_1333 aceK; AceK K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D PPUBIRD1_4084 L-carnitine dehydratase/bile acid-inducible protein F K07749 frc; formyl-CoA transferase [EC:2.8.3.16]
D PPUBIRD1_4792 Poly(3-hydroxyalkanoate) depolymerase K22250 phaZ; poly(3-hydroxyoctanoate) depolymerase [EC:3.1.1.76]
D PPUBIRD1_0572 Putative esterase K23722 pfeE; iron(III)-enterobactin esterase [EC:3.1.1.108]
D PPUBIRD1_0330 Hypothetical protein, conserved K27492 cdhB; betainyl-CoA thioesterase [EC:3.1.2.33]
D PPUBIRD1_3688 Thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PPUBIRD1_2454 Thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PPUBIRD1_3600 Thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PPUBIRD1_0281 Thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PPUBIRD1_1399 TrpH family protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D PPUBIRD1_1684 Phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D PPUBIRD1_2354 Diguanylate phosphodiesterase K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D PPUBIRD1_0159 EAL domain containing protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D PPUBIRD1_0106 Sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6]
D PPUBIRD1_3605 Beta-lactamase domain-containing protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D PPUBIRD1_2405 endA; EndA K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D PPUBIRD1_3230 Deoxyribonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D PPUBIRD1_3702 TatD family deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PPUBIRD1_0835 TatD family deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PPUBIRD1_3374 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PPUBIRD1_3053 Endo-1,4-D-glucanase K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D PPUBIRD1_1854 Glycoside hydrolase family protein K18650 pehX; exo-poly-alpha-galacturonosidase [EC:3.2.1.82]
D PPUBIRD1_0097 def; Def K01462 PDF; peptide deformylase [EC:3.5.1.88]
D PPUBIRD1_1339 def_2; Def_2 K01462 PDF; peptide deformylase [EC:3.5.1.88]
D PPUBIRD1_1157 Acyl-homoserine lactone acylase quiP K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97]
D PPUBIRD1_2835 Acyl-homoserine lactone acylase pvdQ K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97]
D PPUBIRD1_0991 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D PPUBIRD1_2141 Alpha/beta hydrolase fold project K23465 tgnD; (E)-2-((N-methylformamido)methylene)succinate hydrolase [EC:3.5.1.-]
D PPUBIRD1_3096 Hydroxydechloroatrazine ethylaminohydrolase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]
D PPUBIRD1_3407 Endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D PPUBIRD1_2984 Endoribonuclease, putative K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D PPUBIRD1_3714 Maf-like protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D PPUBIRD1_3620 ATPase, putative K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PPUBIRD1_4960 Hypothetical protein, conserved K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D PPUBIRD1_2667 Hypothetical protein, conserved K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D PPUBIRD1_2900 UxaA family hydrolase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D PPUBIRD1_4686 Carbohydrate kinase, YjeF related protein K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]
D PPUBIRD1_4031 Probable cysteine desulfurase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D PPUBIRD1_2719 Phenylacetaldoxime dehydratase K13028 oxdA; aliphatic aldoxime dehydratase [EC:4.8.1.2]
D PPUBIRD1_1538 Peptidylprolyl isomerase, FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D PPUBIRD1_1064 Hypothetical protein, conserved K18479 yihS; sulfoquinovose isomerase [EC:5.3.1.31]
D PPUBIRD1_0596 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D PPUBIRD1_1145 Electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D PPUBIRD1_1595 Heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D PPUBIRD1_4929 cadA; CadA K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D PPUBIRD1_3035 Magnesium-transporting ATPase, P-type 1 K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D PPUBIRD1_4391 sfsA; SfsA K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D PPUBIRD1_0284 fdhD; FdhD K02379 fdhD; FdhD protein
D PPUBIRD1_0898 fdxB; FdxB K04755 fdx; ferredoxin, 2Fe-2S
D PPUBIRD1_3991 fdxA; FdxA K05524 fdxA; ferredoxin
D PPUBIRD1_1144 Electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D PPUBIRD1_1143 Hypothetical protein, conserved K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D PPUBIRD1_1146 Hypothetical protein, conserved K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D PPUBIRD1_4322 mioC; MioC K06205 mioC; MioC protein
D PPUBIRD1_0894 iscU; IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D PPUBIRD1_2926 Putative ferredoxin K13795 citB; citrate/tricarballylate utilization protein
D PPUBIRD1_2927 Tricarballylate dehydrogenase K13796 cobZ; tricarballylate dehydrogenase
D PPUBIRD1_1649 Electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
D PPUBIRD1_0114 Hypothetical protein, conserved K09165 K09165; dodecin
C 99983 Lipid metabolism
D PPUBIRD1_4563 Acyl-CoA dehydrogenase domain-containing protein K09456 aidB; putative acyl-CoA dehydrogenase
D PPUBIRD1_4920 Hypothetical protein, conserved K21830 pchP; phosphorylcholine phosphatase
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D PPUBIRD1_0828 Putative sulfate transport protein CysZ K06203 cysZ; CysZ protein
D PPUBIRD1_3111 Glyoxalase/bleomycin resistance protein/dioxygenase K08234 yaeR; glyoxylase I family protein
D PPUBIRD1_4883 Alanine racemase domain protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D PPUBIRD1_4276 Alginate biosynthesis protein algK K19292 algK; alginate biosynthesis protein AlgK
D PPUBIRD1_2511 Hypothetical protein, conserved K07027 K07027; glycosyltransferase 2 family protein
D PPUBIRD1_3054 Cyclic di-GMP-binding protein K20541 bcsB; cellulose synthase operon protein B
C 99987 Cofactor metabolism
D PPUBIRD1_2288 cobW; CobW K02234 cobW; cobalamin biosynthesis protein CobW
D PPUBIRD1_0219 hemY; HemY K02498 hemY; HemY protein
D PPUBIRD1_4801 Probable ubiquinone biosynthesis protein ubiB K03688 ubiB; ubiquinone biosynthesis protein
D PPUBIRD1_4800 Hypothetical protein, conserved K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D PPUBIRD1_5030 Hypothetical protein, conserved K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D PPUBIRD1_2292 Hypothetical protein, conserved K13580 K13580; magnesium chelatase subunit ChlD-like protein
C 99988 Secondary metabolism
D PPUBIRD1_1712 chrR; ChrR K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
D PPUBIRD1_0043 X-Pro dipeptidyl-peptidase family protein K24084 aidA; quorum-quenching protein AidA
C 99999 Others
D PPUBIRD1_3284 DoxX family protein K15977 K15977; putative oxidoreductase
D PPUBIRD1_1040 DoxX family protein K15977 K15977; putative oxidoreductase
D PPUBIRD1_1901 DoxX family protein K15977 K15977; putative oxidoreductase
D PPUBIRD1_3372 DoxX family protein K15977 K15977; putative oxidoreductase
D PPUBIRD1_4265 Carboxylesterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D PPUBIRD1_1804 Cold-shock DNA-binding domain-containing protein K03704 cspA; cold shock protein
D PPUBIRD1_1035 Cold-shock domain-containing protein K03704 cspA; cold shock protein
D PPUBIRD1_1149 capB; CapB K03704 cspA; cold shock protein
D PPUBIRD1_3215 Cold shock protein capa, fragment-related protein K03704 cspA; cold shock protein
D PPUBIRD1_4038 cspA; CspA K03704 cspA; cold shock protein
D PPUBIRD1_1246 Cold-shock DNA-binding domain-containing protein K03704 cspA; cold shock protein
D PPUBIRD1_0221 pfrA; PfrA K07740 rsd; regulator of sigma D
D PPUBIRD1_5029 glnK; GlnK K04752 glnK; nitrogen regulatory protein P-II 2
D PPUBIRD1_0271 S1 RNA-binding domain-containing protein K06959 tex; protein Tex
C 99974 Translation
D PPUBIRD1_5003 Uncharacterized ABC transporter ATP-binding protein yhiH K13926 rbbA; ribosome-dependent ATPase
D PPUBIRD1_2481 Metallo-beta-lactamase family protein K07576 K07576; metallo-beta-lactamase family protein
D PPUBIRD1_3837 Beta-lactamase domain protein K07576 K07576; metallo-beta-lactamase family protein
D PPUBIRD1_1156 RNA processing exonuclease K07577 K07577; putative mRNA 3-end processing factor
C 99975 Protein processing
D PPUBIRD1_3969 Hypothetical protein, conserved K03668 hslJ; heat shock protein HslJ
D PPUBIRD1_1805 clpS; ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D PPUBIRD1_3386 tig; Tig K03545 tig; trigger factor
D PPUBIRD1_4375 Sulfoxide reductase heme-binding subunit yedZ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D PPUBIRD1_0531 Formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein
D PPUBIRD1_2888 ureE; UreE K03187 ureE; urease accessory protein
D PPUBIRD1_2886 Urease accessory protein ureF K03188 ureF; urease accessory protein
D PPUBIRD1_2885 ureG; UreG K03189 ureG; urease accessory protein
D PPUBIRD1_2892 Urease accessory protein ureD K03190 ureD; urease accessory protein
D PPUBIRD1_2887 ureJ; UreJ K03192 ureJ; urease accessory protein
D PPUBIRD1_4436 smpB; SmpB K03664 smpB; SsrA-binding protein
D PPUBIRD1_5033 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein
D PPUBIRD1_4950 2OG-Fe(II) oxygenase K07394 K07394; SM-20-related protein
D PPUBIRD1_2988 Hypothetical protein, conserved K07395 K07395; putative proteasome-type protease
D PPUBIRD1_3854 DSBA oxidoreductase K07396 K07396; putative protein-disulfide isomerase
D PPUBIRD1_0462 OsmC family protein K07397 yhfA; putative redox protein
D PPUBIRD1_3307 yhgI; YhgI K07400 nfuA; Fe/S biogenesis protein NfuA
D PPUBIRD1_1387 Hypothetical protein, conserved K07401 K07401; selenoprotein W-related protein
D PPUBIRD1_1575 Xanthine dehydrogenase accessory factor XdhC, putative K07402 xdhC; xanthine dehydrogenase accessory factor
D PPUBIRD1_1858 Hypothetical protein, conserved K07402 xdhC; xanthine dehydrogenase accessory factor
D PPUBIRD1_1622 Xanthine dehydrogenase accessory factor, putative K07402 xdhC; xanthine dehydrogenase accessory factor
D PPUBIRD1_0229 Hypothetical protein, conserved K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D PPUBIRD1_4206 Hypothetical protein, conserved K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D PPUBIRD1_2109 Hypothetical protein, conserved K07454 K07454; putative restriction endonuclease
D PPUBIRD1_5078 radC; RadC K03630 radC; DNA repair protein RadC
D PPUBIRD1_3923 Hypothetical protein, conserved K09760 rmuC; DNA recombination protein RmuC
D PPUBIRD1_4238 Hypothetical protein, conserved K07460 yraN; putative endonuclease
D PPUBIRD1_0098 dprA; DprA K04096 smf; DNA processing protein
D PPUBIRD1_1812 Recombination factor protein RarA K07478 ycaJ; putative ATPase
D PPUBIRD1_4536 Transposase IS3 K07483 K07483; transposase
D PPUBIRD1_0692 Hypothetical protein, conserved K07484 K07484; transposase
D PPUBIRD1_0693 ISPsy5, Orf1 K07484 K07484; transposase
D PPUBIRD1_3822 Hypothetical protein, conserved K07491 rayT; REP-associated tyrosine transposase
D PPUBIRD1_0618 Hypothetical protein, conserved K07491 rayT; REP-associated tyrosine transposase
D PPUBIRD1_4971 Hypothetical protein, conserved K07491 rayT; REP-associated tyrosine transposase
D PPUBIRD1_4537 Putative isxal7 transposase orfb protein K07497 K07497; putative transposase
D PPUBIRD1_0296 Integrase catalytic subunit K07497 K07497; putative transposase
D PPUBIRD1_2799 Putative phage integrase K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D PPUBIRD1_1588 Hypothetical protein, conserved K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D PPUBIRD1_1199 Formate/nitrate transporter K21990 yfdC; formate-nitrite transporter family protein
D PPUBIRD1_1109 Amino acid permease-associated region K03293 TC.AAT; amino acid transporter, AAT family
D PPUBIRD1_3593 CitMHS family citrate/H+ symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D PPUBIRD1_2925 Citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D PPUBIRD1_0176 Citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D PPUBIRD1_2527 Major facilitator transporter K03301 TC.AAA; ATP:ADP antiporter, AAA family
D PPUBIRD1_1747 Phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D PPUBIRD1_1375 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D PPUBIRD1_0535 Amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D PPUBIRD1_1668 braZ; BraZ K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D PPUBIRD1_2530 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D PPUBIRD1_1785 NCS1 nucleoside transporter K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D PPUBIRD1_2131 Permease for cytosine/purine, uracil, thiamine, allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D PPUBIRD1_1542 NCS1 nucleoside transporter K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D PPUBIRD1_1878 Hypothetical protein, conserved K23243 rcnB; nickel/cobalt homeostasis protein
D PPUBIRD1_0078 Hypothetical protein, conserved K23243 rcnB; nickel/cobalt homeostasis protein
C 99978 Cell growth
D PPUBIRD1_1398 Intracellular septation protein A K06190 ispZ; intracellular septation protein
D PPUBIRD1_4845 M24/M37 family peptidase K22719 envC; murein hydrolase activator
C 99993 Cell motility
D PPUBIRD1_4385 TfoX domain-containing protein K07343 tfoX; DNA transformation protein and related proteins
D PPUBIRD1_0199 Surface adhesion protein, putative K12549 lapA; surface adhesion protein
D PPUBIRD1_3663 Pili assembly chaperone K15540 ecpD; chaperone protein EcpD
C 99995 Signaling proteins
D PPUBIRD1_0834 Signaling modulator of AmpD, AmpE K03807 ampE; AmpE protein
D PPUBIRD1_3469 ProQ activator of osmoprotectant transporter ProP K03607 proQ; ProP effector
D PPUBIRD1_3520 Universal stress protein K06149 uspA; universal stress protein A
D PPUBIRD1_2576 Universal stress protein K14055 uspE; universal stress protein E
D PPUBIRD1_2929 UspA domain-containing protein K14055 uspE; universal stress protein E
D PPUBIRD1_3030 UspA domain-containing protein K14055 uspE; universal stress protein E
D PPUBIRD1_4833 GTP-binding protein typA/BipA K06207 typA; GTP-binding protein
D PPUBIRD1_3338 CBS domain-containing protein K07168 K07168; CBS domain-containing membrane protein
D PPUBIRD1_4570 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D PPUBIRD1_4270 PhoH family protein K07175 phoH2; PhoH-like ATPase
D PPUBIRD1_0435 Hypothetical protein, conserved K07180 prkA; serine protein kinase
D PPUBIRD1_0390 CBS domain-containing protein K07182 K07182; CBS domain-containing protein
D PPUBIRD1_2158 Hypothetical protein, conserved K07184 ygiM; SH3 domain protein
D PPUBIRD1_4697 Hypothetical protein, conserved K07186 smp; membrane protein
D PPUBIRD1_1946 Non-specific serine/threonine protein kinase K08482 kaiC; circadian clock protein KaiC
D PPUBIRD1_4210 Hypothetical protein, conserved K09767 yajQ; cyclic-di-GMP-binding protein
D PPUBIRD1_2561 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K22747 AIFM3; apoptosis-inducing factor 3
C 99992 Structural proteins
D PPUBIRD1_1811 lolA; LolA K03634 lolA; outer membrane lipoprotein carrier protein
D PPUBIRD1_0770 lolB; LolB K02494 lolB; outer membrane lipoprotein LolB
D PPUBIRD1_3880 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D PPUBIRD1_3491 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D PPUBIRD1_1177 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D PPUBIRD1_4015 Outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D PPUBIRD1_3993 Peptidase M23B K06194 nlpD; lipoprotein NlpD
D PPUBIRD1_3816 Capsule polysaccharide biosynthesis protein K07265 kpsS; capsular polysaccharide export protein
D PPUBIRD1_3815 Capsule polysaccharide biosynthesis protein K07266 kpsC; capsular polysaccharide export protein
D PPUBIRD1_3820 Capsule polysaccharide biosynthesis protein K07266 kpsC; capsular polysaccharide export protein
D PPUBIRD1_0545 oprG; OprG K07275 ompW; outer membrane protein
D PPUBIRD1_0799 Putative lipoprotein K07286 yajG; uncharacterized lipoprotein
D PPUBIRD1_0316 AsmA family protein K07289 asmA; AsmA protein
D PPUBIRD1_4644 Hypothetical protein, conserved K07290 yhjG; AsmA family protein
D PPUBIRD1_4620 Hypothetical protein, conserved K07340 ybbJ; inner membrane protein
D PPUBIRD1_5002 Secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein
D PPUBIRD1_4642 DNA-binding transcriptional activator OsmE K04064 osmE; osmotically inducible lipoprotein OsmE
D PPUBIRD1_0366 Hypothetical protein, conserved K06143 creD; inner membrane protein
D PPUBIRD1_1528 ccmE; CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D PPUBIRD1_1531 Cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D PPUBIRD1_1532 TPR repeat-containing protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D PPUBIRD1_0903 Cro/CI family transcriptional regulator K15539 rodZ; cytoskeleton protein RodZ
D PPUBIRD1_1194 hypothetical protein K21695 aaeX; protein AaeX
C 99994 Others
D PPUBIRD1_5117 phoU; PhoU K02039 phoU; phosphate transport system protein
D PPUBIRD1_1133 BFD domain protein (2Fe-2S)-binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin
D PPUBIRD1_4814 mdoG; MdoG K03670 mdoG; periplasmic glucans biosynthesis protein
D PPUBIRD1_3244 Integral membrane protein TerC K05794 terC; tellurite resistance protein TerC
D PPUBIRD1_2459 TerC family membrane protein K05794 terC; tellurite resistance protein TerC
D PPUBIRD1_0438 apaG; ApaG K06195 apaG; ApaG protein
D PPUBIRD1_5020 cyaY; CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D PPUBIRD1_2221 Monooxygenase, putative K07222 K07222; putative flavoprotein involved in K+ transport
D PPUBIRD1_0964 Hypothetical protein, conserved K07231 K07231; putative iron-regulated protein
D PPUBIRD1_3447 Copper resistance protein B, putative K07233 pcoB; copper resistance protein B
D PPUBIRD1_2894 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO
D PPUBIRD1_2513 Metallothionein, putative K21904 smtA; metallothionein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D PPUBIRD1_1115 GlpM family protein K02442 glpM; membrane protein GlpM
D PPUBIRD1_3671 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D PPUBIRD1_3103 Hypothetical protein, conserved K06192 pqiB; paraquat-inducible protein B
D PPUBIRD1_0650 Hypothetical protein, conserved K06192 pqiB; paraquat-inducible protein B
D PPUBIRD1_4740 Acetyltransferase K02348 elaA; ElaA protein
D PPUBIRD1_2487 phaM; PhaM K02617 paaY; phenylacetic acid degradation protein
D PPUBIRD1_4408 Transport-associated protein K04065 osmY; hyperosmotically inducible periplasmic protein
D PPUBIRD1_0415 pqqB; PqqB K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B
D PPUBIRD1_0413 pqqD; PqqD K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D
D PPUBIRD1_2994 Coenzyme PQQ synthesis protein D 2 K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D
D PPUBIRD1_2721 Globin K06886 glbN; hemoglobin
D PPUBIRD1_3881 Patatin K07001 K07001; NTE family protein
D PPUBIRD1_1386 Patatin K07001 K07001; NTE family protein
D PPUBIRD1_3380 Patatin K07001 K07001; NTE family protein
D PPUBIRD1_0470 Iron-sulfur cluster insertion protein erpA K15724 erpA; iron-sulfur cluster insertion protein
D PPUBIRD1_2564 Membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D PPUBIRD1_1338 Putative ribonuclease BN K07058 K07058; membrane protein
D PPUBIRD1_4203 fxsA; FxsA K07113 fxsA; UPF0716 protein FxsA
D PPUBIRD1_4032 Fe-S metabolism associated SufE K02426 sufE; cysteine desulfuration protein SufE
D PPUBIRD1_3855 Hypothetical protein, conserved K07146 K07146; UPF0176 protein
D PPUBIRD1_1799 HflD-like high frequency lysogenization protein K07153 hflD; high frequency lysogenization protein
D PPUBIRD1_2347 Glyoxalase/bleomycin resistance protein/dioxygenase K04750 phnB; PhnB protein
D PPUBIRD1_2014 glcG; GlcG K11477 glcG; glc operon protein GlcG
D PPUBIRD1_2342 Bacteriophage N4 receptor, outer membrane subunit K11739 nfrA; bacteriophage N4 adsorption protein A
D PPUBIRD1_2343 nfrB; NfrB K11740 nfrB; bacteriophage N4 adsorption protein B
D PPUBIRD1_2957 arsH; ArsH K11811 arsH; arsenical resistance protein ArsH
D PPUBIRD1_1245 Hypothetical protein, conserved K03745 slyX; SlyX protein
D PPUBIRD1_0733 creA; CreA K05805 creA; CreA protein
D PPUBIRD1_3977 Protein sprT K02742 sprT; SprT protein
D PPUBIRD1_3672 Sporulation domain protein K03749 dedD; DedD protein
D PPUBIRD1_4866 Sporulation domain protein K03112 damX; DamX protein
D PPUBIRD1_0589 SNARE associated Golgi protein-related protein K03975 dedA; membrane-associated protein
D PPUBIRD1_0648 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D PPUBIRD1_0649 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D PPUBIRD1_3104 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D PPUBIRD1_3105 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D PPUBIRD1_3607 Hypothetical protein, conserved K00389 yidH; putative membrane protein
D PPUBIRD1_1180 Membrane protein-like protein K08985 K08985; putative lipoprotein
D PPUBIRD1_4155 Hypothetical protein, conserved K08988 K08988; putative membrane protein
D PPUBIRD1_1169 Hypothetical protein, conserved K08993 yhhL; putative membrane protein
D PPUBIRD1_2535 Outer membrane protein-like protein K08995 K08995; putative membrane protein
D PPUBIRD1_1165 Hypothetical protein, conserved K09858 K09858; SEC-C motif domain protein
D PPUBIRD1_4041 Putative lipoprotein K09914 K09914; putative lipoprotein
D PPUBIRD1_2226 Hypothetical protein, conserved K11312 K11312; cupin 2 domain-containing protein
D PPUBIRD1_0727 Alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA
C 99997 Function unknown
D PPUBIRD1_3777 Ankyrin domain-containing protein K06867 K06867; uncharacterized protein
D PPUBIRD1_2331 Radical SAM domain-containing protein K06871 K06871; uncharacterized protein
D PPUBIRD1_2526 Hypothetical protein, conserved K06884 K06884; uncharacterized protein
D PPUBIRD1_2505 Hypothetical protein, conserved K06884 K06884; uncharacterized protein
D PPUBIRD1_3418 Prolyl oligopeptidase family protein K06889 K06889; uncharacterized protein
D PPUBIRD1_3783 Alpha/beta hydrolase fold project K06889 K06889; uncharacterized protein
D PPUBIRD1_4059 Putative lipoprotein K06889 K06889; uncharacterized protein
D PPUBIRD1_3739 Hypothetical protein, conserved K06923 K06923; uncharacterized protein
D PPUBIRD1_4104 Hypothetical protein, conserved K06938 K06938; uncharacterized protein
D PPUBIRD1_3345 Hypothetical protein, conserved K06938 K06938; uncharacterized protein
D PPUBIRD1_2162 Hypothetical protein, conserved K06938 K06938; uncharacterized protein
D PPUBIRD1_1656 Hypothetical protein, conserved K06940 K06940; uncharacterized protein
D PPUBIRD1_0863 Hypothetical protein, conserved K06940 K06940; uncharacterized protein
D PPUBIRD1_4831 Hypothetical protein, conserved K06940 K06940; uncharacterized protein
D PPUBIRD1_5066 Hypothetical protein, conserved K06940 K06940; uncharacterized protein
D PPUBIRD1_3160 Metal dependent phosphohydrolase K06950 K06950; uncharacterized protein
D PPUBIRD1_0672 Hypothetical protein, conserved K06950 K06950; uncharacterized protein
D PPUBIRD1_2938 Amine oxidase K06954 K06954; uncharacterized protein
D PPUBIRD1_4921 Sodium:dicarboxylate symporter K06956 K06956; uncharacterized protein
D PPUBIRD1_3363 Hypothetical protein, conserved K06975 K06975; uncharacterized protein
D PPUBIRD1_4193 Hypothetical protein, conserved K06986 K06986; uncharacterized protein
D PPUBIRD1_1154 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein
D PPUBIRD1_2429 Ring-cleaving dioxygenase, putative K06991 K06991; uncharacterized protein
D PPUBIRD1_2880 Hypothetical protein, conserved K06992 K06992; uncharacterized protein
D PPUBIRD1_2933 Hypothetical protein, conserved K06995 K06995; uncharacterized protein
D PPUBIRD1_0925 hypothetical protein K06995 K06995; uncharacterized protein
D PPUBIRD1_4363 Hypothetical protein, conserved K06995 K06995; uncharacterized protein
D PPUBIRD1_5073 hypothetical protein K06995 K06995; uncharacterized protein
D PPUBIRD1_1780 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein
D PPUBIRD1_4703 Hypothetical protein, conserved K07000 K07000; uncharacterized protein
D PPUBIRD1_2663 RND efflux transporter K07003 K07003; uncharacterized protein
D PPUBIRD1_2913 RND efflux transporter K07003 K07003; uncharacterized protein
D PPUBIRD1_3632 RND efflux transporter K07003 K07003; uncharacterized protein
D PPUBIRD1_1208 Oxidoreductase, FAD-binding protein K07006 K07006; uncharacterized protein
D PPUBIRD1_4252 Alpha/beta fold family hydrolase-like protein K07018 K07018; uncharacterized protein
D PPUBIRD1_2413 Hypothetical protein, conserved K07018 K07018; uncharacterized protein
D PPUBIRD1_4907 Alpha/beta fold family hydrolase K07019 K07019; uncharacterized protein
D PPUBIRD1_1607 Hypothetical protein, conserved K07020 K07020; uncharacterized protein
D PPUBIRD1_4384 Hypothetical protein, conserved K07028 K07028; uncharacterized protein
D PPUBIRD1_1382 Hypothetical protein, conserved K07039 K07039; uncharacterized protein
D PPUBIRD1_1206 Metal-binding protein K07039 K07039; uncharacterized protein
D PPUBIRD1_4353 Metallopeptidase, zinc binding protein K07054 K07054; uncharacterized protein
D PPUBIRD1_0125 Hypothetical protein, conserved K07070 K07070; uncharacterized protein
D PPUBIRD1_0789 NAD-dependent epimerase/dehydratase K07071 K07071; uncharacterized protein
D PPUBIRD1_1839 Periplasmic binding protein, putative K07080 K07080; uncharacterized protein
D PPUBIRD1_3410 Hypothetical protein, conserved K07090 K07090; uncharacterized protein
D PPUBIRD1_0083 Hypothetical protein, conserved K07090 K07090; uncharacterized protein
D PPUBIRD1_0525 Hypothetical protein, conserved K07090 K07090; uncharacterized protein
D PPUBIRD1_0539 Hypothetical protein, conserved K07090 K07090; uncharacterized protein
D PPUBIRD1_1873 Hypothetical protein, conserved K07090 K07090; uncharacterized protein
D PPUBIRD1_3752 Hypothetical protein, conserved K07090 K07090; uncharacterized protein
D PPUBIRD1_1792 Hypothetical protein, conserved K07090 K07090; uncharacterized protein
D PPUBIRD1_4359 Hypothetical protein, conserved K07090 K07090; uncharacterized protein
D PPUBIRD1_1079 Hypothetical protein, conserved K07090 K07090; uncharacterized protein
D PPUBIRD1_4934 Hypothetical protein, conserved K07090 K07090; uncharacterized protein
D PPUBIRD1_1093 uxpB; UxpB K07093 K07093; uncharacterized protein
D PPUBIRD1_2183 Hypothetical protein, conserved K07112 K07112; uncharacterized protein
D PPUBIRD1_2476 YeeE/YedE family protein K07112 K07112; uncharacterized protein
D PPUBIRD1_4168 NAD-dependent epimerase/dehydratase K07118 K07118; uncharacterized protein
D PPUBIRD1_4142 Hypothetical protein, conserved K07120 K07120; uncharacterized protein
D PPUBIRD1_4237 LppC family lipoprotein K07121 K07121; uncharacterized protein
D PPUBIRD1_2698 Short chain dehydrogenase/reductase family oxidoreductase K07124 K07124; uncharacterized protein
D PPUBIRD1_0466 Short chain dehydrogenase/reductase family oxidoreductase K07124 K07124; uncharacterized protein
D PPUBIRD1_4568 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein
D PPUBIRD1_0914 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D PPUBIRD1_1179 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein
D PPUBIRD1_3523 MOSC domain containing protein K07140 K07140; MOSC domain-containing protein
D PPUBIRD1_4597 Peptidase S16, lon domain-containing protein K07157 K07157; uncharacterized protein
D PPUBIRD1_4585 Hypothetical protein, conserved K09158 K09158; uncharacterized protein
D PPUBIRD1_1311 Hypothetical protein, conserved K09160 K09160; uncharacterized protein
D PPUBIRD1_3295 Hypothetical protein, conserved K09190 K09190; uncharacterized protein
D PPUBIRD1_2939 Hypothetical protein, conserved K09701 K09701; uncharacterized protein
D PPUBIRD1_5016 Hypothetical protein, conserved K09768 K09768; uncharacterized protein
D PPUBIRD1_1397 YCII-related domain protein K09780 K09780; uncharacterized protein
D PPUBIRD1_1562 Hypothetical protein, conserved K09781 K09781; uncharacterized protein
D PPUBIRD1_0434 Hypothetical protein, conserved K09786 K09786; uncharacterized protein
D PPUBIRD1_1381 Hypothetical protein, conserved K09790 K09790; uncharacterized protein
D PPUBIRD1_1054 Hypothetical protein, conserved K09790 K09790; uncharacterized protein
D PPUBIRD1_3723 Hypothetical protein, conserved K09791 K09791; uncharacterized protein
D PPUBIRD1_1593 Hypothetical protein, conserved K09792 K09792; uncharacterized protein
D PPUBIRD1_1305 Hypothetical protein, conserved K09794 K09794; uncharacterized protein
D PPUBIRD1_4847 Hypothetical protein, conserved K09798 K09798; uncharacterized protein
D PPUBIRD1_1368 Hypothetical protein, conserved K09803 K09803; uncharacterized protein
D PPUBIRD1_1335 RNA binding S1 domain protein K00243 K00243; uncharacterized protein
D PPUBIRD1_4698 Hypothetical protein, conserved K09857 K09857; uncharacterized protein
D PPUBIRD1_3102 Hypothetical protein, conserved K09857 K09857; uncharacterized protein
D PPUBIRD1_4272 Hypothetical protein, conserved K09861 K09861; uncharacterized protein
D PPUBIRD1_0683 Zinc-binding protein K09862 K09862; uncharacterized protein
D PPUBIRD1_4996 Hypothetical protein, conserved K09895 K09895; uncharacterized protein
D PPUBIRD1_3866 Hypothetical protein, conserved K09898 K09898; uncharacterized protein
D PPUBIRD1_1308 Hypothetical protein, conserved K09902 K09902; uncharacterized protein
D PPUBIRD1_4253 Hypothetical protein, conserved K09908 K09908; uncharacterized protein
D PPUBIRD1_3959 Hypothetical protein, conserved K09912 K09912; uncharacterized protein
D PPUBIRD1_3240 Hypothetical protein, conserved K09915 K09915; uncharacterized protein
D PPUBIRD1_3636 Hypothetical protein, conserved K09916 K09916; uncharacterized protein
D PPUBIRD1_4311 Hypothetical protein, conserved K09918 K09918; uncharacterized protein
D PPUBIRD1_1356 Hypothetical protein, conserved K09919 K09919; uncharacterized protein
D PPUBIRD1_4705 Hypothetical protein, conserved K09920 K09920; uncharacterized protein
D PPUBIRD1_5024 Hypothetical protein, conserved K09921 K09921; uncharacterized protein
D PPUBIRD1_3553 Hypothetical protein, conserved K09923 K09923; uncharacterized protein
D PPUBIRD1_3857 Hypothetical protein, conserved K09924 K09924; uncharacterized protein
D PPUBIRD1_1596 Hypothetical protein, conserved K09926 K09926; uncharacterized protein
D PPUBIRD1_3285 Hypothetical protein, conserved K09929 K09929; uncharacterized protein
D PPUBIRD1_3286 Hypothetical protein, conserved K09930 K09930; uncharacterized protein
D PPUBIRD1_1042 Hypothetical protein, conserved K09930 K09930; uncharacterized protein
D PPUBIRD1_4326 Hypothetical protein, conserved K09932 K09932; uncharacterized protein
D PPUBIRD1_3950 Hypothetical protein, conserved K09938 K09938; uncharacterized protein
D PPUBIRD1_5086 Hypothetical protein, conserved K09940 K09940; uncharacterized protein
D PPUBIRD1_4526 Putative periplasmic ligand-binding sensor protein K09945 K09945; uncharacterized protein
D PPUBIRD1_0959 Hypothetical protein, conserved K09947 K09947; uncharacterized protein
D PPUBIRD1_4328 Hypothetical protein, conserved K09948 K09948; uncharacterized protein
D PPUBIRD1_0546 Putative lipoprotein K09950 K09950; uncharacterized protein
D PPUBIRD1_0001 Hypothetical protein, conserved K09950 K09950; uncharacterized protein
D PPUBIRD1_0841 Hypothetical protein, conserved K09954 K09954; uncharacterized protein
D PPUBIRD1_2717 Hypothetical protein, conserved K09958 K09958; uncharacterized protein
D PPUBIRD1_2466 Hypothetical protein, conserved K09964 K09964; uncharacterized protein
D PPUBIRD1_4823 Hypothetical protein, conserved K09975 K09975; uncharacterized protein
D PPUBIRD1_3640 Hypothetical protein, conserved K09977 K09977; uncharacterized protein
D PPUBIRD1_3698 Hypothetical protein, conserved K09986 K09986; uncharacterized protein
D PPUBIRD1_1325 Hypothetical protein, conserved K09989 K09989; uncharacterized protein
D PPUBIRD1_0960 Hypothetical protein, conserved K07338 K07338; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 22, 2024