+E Ribosome biogenesis KO
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Ribosome Biogenesis - Pseudomonas putida BIRD-1
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D PPUBIRD1_4123 rnc; Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D PPUBIRD1_2823 Hypothetical protein, conserved K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D PPUBIRD1_4689 orn; Orn K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C PPUBIRD1_4122 era; Era K03595 era; GTPase
C PPUBIRD1_0731 obgE; ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C PPUBIRD1_3433 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C PPUBIRD1_4393 C4-type zinc finger DksA/TraR family protein K06204 dksA; RNA polymerase-binding transcription factor
C PPUBIRD1_4414 nusA; NusA K02600 nusA; transcription termination/antitermination protein NusA
C PPUBIRD1_0559 nusB; NusB K03625 nusB; transcription antitermination protein NusB
C PPUBIRD1_0479 nusG; NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D PPUBIRD1_4149 Pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PPUBIRD1_0439 ksgA; KsgA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PPUBIRD1_0095 rsmB; RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PPUBIRD1_0808 Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PPUBIRD1_4904 Putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PPUBIRD1_4772 Hypothetical protein, conserved K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PPUBIRD1_0068 rsmG; RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PPUBIRD1_4234 mraW; MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PPUBIRD1_4236 Uroporphyrin-III C/tetrapyrrole methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PPUBIRD1_4046 Hypothetical protein, conserved K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D PPUBIRD1_4036 RRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D PPUBIRD1_4668 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PPUBIRD1_4421 Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D PPUBIRD1_1027 Ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D PPUBIRD1_4344 Ribosomal RNA large subunit methyltransferase G K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D PPUBIRD1_4591 Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PPUBIRD1_1546 Hypothetical protein, conserved K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PPUBIRD1_4917 Hypothetical protein, conserved K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PPUBIRD1_4728 Hypothetical protein, conserved K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D PPUBIRD1_3556 rlmL; RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D PPUBIRD1_3538 Ribosomal RNA large subunit methyltransferase M K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D PPUBIRD1_0901 Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PPUBIRD1_3962 rumA; RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D PPUBIRD1_3886 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PPUBIRD1_3541 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PPUBIRD1_1404 RNA-binding S4 domain-containing protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PPUBIRD1_3717 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D PPUBIRD1_0674 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PPUBIRD1_4561 Pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D PPUBIRD1_1232 RNA-binding S4 domain-containing protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C PPUBIRD1_0738 Acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C PPUBIRD1_0275 rimK; RimK K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C PPUBIRD1_4096 rimM; RimM K02860 rimM; 16S rRNA processing protein RimM
C PPUBIRD1_1234 rimO; RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C PPUBIRD1_2168 Hypothetical protein, conserved K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C PPUBIRD1_4601 prmA; PrmA K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C PPUBIRD1_3785 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C PPUBIRD1_1797 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C PPUBIRD1_4123 rnc; Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
C PPUBIRD1_3719 Ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
C PPUBIRD1_0989 cafA; CafA K08301 rng; ribonuclease G [EC:3.1.26.-]
C PPUBIRD1_4784 Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C PPUBIRD1_4736 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C PPUBIRD1_3747 DEAD-box ATP dependent DNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C PPUBIRD1_1366 DEAD/DEAH box helicase domain-containing protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C PPUBIRD1_4122 era; Era K03595 era; GTPase
C PPUBIRD1_4690 Putative ribosome biogenesis GTPase rsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C PPUBIRD1_0908 engA; EngA K03977 engA; GTPase
C PPUBIRD1_0731 obgE; ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C PPUBIRD1_4680 hflX; HflX K03665 hflX; GTPase
B Other maturation factors
C PPUBIRD1_0099 rimN; RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C PPUBIRD1_5095 spoT; SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C PPUBIRD1_4412 rbfA; RbfA K02834 rbfA; ribosome-binding factor A
C PPUBIRD1_4415 Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP
C PPUBIRD1_4592 Iojap-like protein K09710 ybeB; ribosome-associated protein
C PPUBIRD1_4571 Putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C PPUBIRD1_4422 Hypothetical protein, conserved K07574 yhbY; RNA-binding protein
C PPUBIRD1_0993 Hypothetical protein, conserved K09889 yjgA; ribosome-associated protein
C PPUBIRD1_1004 rpoX; RpoX K05808 hpf; ribosome hibernation promoting factor
C PPUBIRD1_0765 Translation-associated GTPase K06942 ychF; ribosome-binding ATPase
C PPUBIRD1_3713 Hypothetical protein, conserved K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024