+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudopropionibacterium propionicum

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HMPREF9154_2181 6-O-methylguanine DNA methyltransferase, DNA binding domain protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E HMPREF9154_0527 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HMPREF9154_0577 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HMPREF9154_0352 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D HMPREF9154_3101 putative mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF9154_1741 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF9154_0515 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF9154_1709 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF9154_1536 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HMPREF9154_2181 6-O-methylguanine DNA methyltransferase, DNA binding domain protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E HMPREF9154_0527 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HMPREF9154_2182 metal-binding domain of Ada K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E HMPREF9154_0577 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E HMPREF9154_0564 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E HMPREF9154_1303 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E HMPREF9154_1866 formamidopyrimidine-DNA glycosylase H2TH domain protein K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E HMPREF9154_0352 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HMPREF9154_2380 putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E HMPREF9154_0304 apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E HMPREF9154_1868 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E HMPREF9154_1906 polA; DNA polymerase I, thermostable K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E HMPREF9154_1892 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E HMPREF9154_1896 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E HMPREF9154_1057 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E HMPREF9154_1522 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF9154_2116 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF9154_1940 HRDC domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF9154_1906 polA; DNA polymerase I, thermostable K02335 polA; DNA polymerase I [EC:2.7.7.7] E HMPREF9154_1868 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HMPREF9154_2293 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HMPREF9154_2292 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HMPREF9154_2225 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F HMPREF9154_1619 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F HMPREF9154_0586 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E HMPREF9154_2683 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E HMPREF9154_2684 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E HMPREF9154_1668 putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HMPREF9154_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E HMPREF9154_1752 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E HMPREF9154_2694 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E HMPREF9154_2080 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase E HMPREF9154_1868 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HMPREF9154_1522 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF9154_2116 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF9154_1940 HRDC domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HMPREF9154_2359 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HMPREF9154_1941 exodeoxyribonuclease V, gamma subunit domain protein K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E HMPREF9154_1943 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E HMPREF9154_1371 recA; RecA protein K03553 recA; recombination protein RecA E HMPREF9154_1652 Holliday junction DNA helicase RuvA, N-terminal domain protein K03550 ruvA; holliday junction DNA helicase RuvA E HMPREF9154_1651 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HMPREF9154_1653 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E HMPREF9154_1617 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E HMPREF9154_1371 recA; RecA protein K03553 recA; recombination protein RecA E HMPREF9154_0434 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E HMPREF9154_0004 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E HMPREF9154_0490 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HMPREF9154_0411 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HMPREF9154_1288 putative ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HMPREF9154_3012 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HMPREF9154_2899 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HMPREF9154_1437 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E HMPREF9154_2497 recR; recombination protein RecR K06187 recR; recombination protein RecR E HMPREF9154_2014 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E HMPREF9154_1652 Holliday junction DNA helicase RuvA, N-terminal domain protein K03550 ruvA; holliday junction DNA helicase RuvA E HMPREF9154_1651 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HMPREF9154_1653 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E HMPREF9154_0625 cas1_1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E HMPREF9154_2752 cas1_2; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E HMPREF9154_2882 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HMPREF9154_1527 DNA gyrase/topoisomerase IV, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HMPREF9154_0011 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HMPREF9154_1524 gyrB_2; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HMPREF9154_0010 gyrB_1; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HMPREF9154_2701 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F HMPREF9154_2722 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HMPREF9154_1437 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F HMPREF9154_2497 recR; recombination protein RecR K06187 recR; recombination protein RecR F HMPREF9154_1868 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F HMPREF9154_0888 type III restriction enzyme, res subunit K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HMPREF9154_1892 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F HMPREF9154_1896 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HMPREF9154_0984 ImpB/MucB/SamB family protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D HMPREF9154_1371 recA; RecA protein K03553 recA; recombination protein RecA D HMPREF9154_1991 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D HMPREF9154_2014 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D HMPREF9154_2359 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HMPREF9154_1372 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D HMPREF9154_1380 DEAD/DEAH box helicase domain protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D HMPREF9154_1876 DEAD/H associated K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D HMPREF9154_3101 putative mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF9154_1741 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF9154_0515 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF9154_1709 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HMPREF9154_0457 hydrolase, NUDIX family K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D HMPREF9154_2009 hydrolase, NUDIX family K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D HMPREF9154_1536 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HMPREF9154_1988 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024