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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Prunus persica (peach)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        18769771 DNA-directed RNA polymerase II subunit 1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        18778996 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        18766866 DNA-directed RNA polymerases II, IV and V subunit 3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        18768832 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        18774706 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        18776203 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        18779306 DNA-directed RNA polymerases IV and V subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        18780573 DNA-directed RNA polymerases IV and V subunit 4 isoform X2	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        18777701 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        18780570 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        18788421 DNA-directed RNA polymerases II, IV and V subunit 9A isoform X1	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        18770632 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18785416 DNA-directed RNA polymerase V subunit 5C	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18786301 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18787557 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18766058 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        18771697 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        18772687 DNA-directed RNA polymerases II and V subunit 8A	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18778776 DNA-directed RNA polymerases II and V subunit 8A	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18777155 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        18781304 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        18788912 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        18776740 DNA-directed RNA polymerase IV subunit 1 isoform X1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        18785507 DNA-directed RNA polymerase V subunit 1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        18790113 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        18788248 DNA-directed RNA polymerase V subunit 7 isoform X1	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        18792299 DNA-directed RNA polymerase V subunit 7 isoform X2	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        18792647 DNA-directed RNA polymerase V subunit 7	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        18775061 transcription initiation factor IIA large subunit	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        18791535 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        18769700 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        18769716 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        18777113 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        18781627 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        18783011 transcription initiation factor IIB isoform X2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        18771628 TATA-box-binding protein 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18772388 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        109946606 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-like	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        18792393 transcription initiation factor TFIID subunit 1 isoform X1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        18776806 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        18772328 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        18776893 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        18791879 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        18778653 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        18781847 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        18775278 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        109948559 uncharacterized protein LOC109948559	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        18774402 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        18781645 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        18783659 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        18788712 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        18781296 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        18770014 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        18783895 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        18785538 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        18775929 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        18776530 transcription initiation factor IIE subunit beta	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        18779550 transcription initiation factor IIF subunit alpha isoform X1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        18784849 general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        18789793 transcription initiation factor IIF subunit beta	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        18776849 probable RNA polymerase II transcription factor B subunit 1-3 isoform X1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        18777976 probable RNA polymerase II transcription factor B subunit 1-1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        18788398 probable RNA polymerase II transcription factor B subunit 1-3 isoform X1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        18774985 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        18793753 RNA polymerase II transcription factor B subunit 4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        18780698 RNA polymerase II transcription factor B subunit 2 isoform X1	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        18777202 DNA repair helicase XPB1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        18767136 DNA repair helicase XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        18777752 RNA polymerase II transcription factor B subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        18777853 RNA polymerase II transcription factor B subunit 5 isoform X2	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        18777839 cyclin-dependent kinase D-3	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        18770740 uncharacterized protein LOC18770740	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        18774778 cyclin-H1-1 isoform X1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        18783697 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        18766528 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        18768366 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        18770361 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        18791578 mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        18791920 mediator of RNA polymerase II transcription subunit 18 isoform X2	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        18770929 mediator of RNA polymerase II transcription subunit 20a isoform X1	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        18771907 mediator of RNA polymerase II transcription subunit 22a	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        18766912 mediator of RNA polymerase II transcription subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        18771315 mediator of RNA polymerase II transcription subunit 7a	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        18774770 mediator of RNA polymerase II transcription subunit 7a	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        18777381 mediator of RNA polymerase II transcription subunit 10b isoform X2	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        18787690 mediator of RNA polymerase II transcription subunit 10b	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        18780694 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        18790643 mediator of RNA polymerase II transcription subunit 21 isoform X1	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        18785375 mediator of RNA polymerase II transcription subunit 31 isoform X2	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        18775199 mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        18780235 cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        18767495 cyclin-C1-2	K15161 CCNC; cyclin-C 
E        18774690 mediator of RNA polymerase II transcription subunit 13 isoform X1	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        18792109 mediator of RNA polymerase II transcription subunit 23 isoform X1	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        109950872 mediator of RNA polymerase II transcription subunit 25 isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        18770265 mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        18767297 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        18766699 mediator of RNA polymerase II transcription subunit 33B	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        18772822 mediator of RNA polymerase II transcription subunit 33A	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        18788819 mediator of RNA polymerase II transcription subunit 33A	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        18767118 histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        18770359 transformation/transcription domain-associated protein isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        18778689 transcriptional adapter ADA2 isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        18784463 transcriptional adapter ADA2a isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        18776806 transcription initiation factor TFIID subunit 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        18772328 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        18776893 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        18791879 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        18778653 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        18781847 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        18775278 transcription initiation factor TFIID subunit 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        18783659 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        18788712 transcription initiation factor TFIID subunit 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        18770014 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        18783895 transcription initiation factor TFIID subunit 12b	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        18774219 SAGA-associated factor 11 homolog	K11363 SGF11; SAGA-associated factor 11 
E        18782199 uncharacterized protein LOC18782199 isoform X2	K11364 SGF29; SAGA-associated factor 29 
E        18780086 protein CHROMATIN REMODELING 5	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        18782326 transcription and mRNA export factor SUS1 isoform X1	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        18788639 ubiquitin carboxyl-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        18769711 splicing factor 3B subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
E        18785266 splicing factor 3B subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        18784757 ATP-dependent helicase BRM	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        18792474 chromatin structure-remodeling complex protein BSH isoform X3	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        18768539 SWI/SNF complex subunit SWI3D	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        18776344 SWI/SNF complex subunit SWI3A	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        18777469 SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        18779430 SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        18792149 SWI/SNF complex subunit SWI3C isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        18776999 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        18781766 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        18781334 actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        18792474 chromatin structure-remodeling complex protein BSH isoform X3	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        18776568 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        18780437 RNA polymerase II transcriptional coactivator KIWI	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        18792366 cell division cycle and apoptosis regulator protein 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        18784611 transcription elongation factor TFIIS	K03145 TFIIS; transcription elongation factor S-II 
E        18783862 transcription elongation factor SPT4 homolog 1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        18766870 putative transcription elongation factor SPT5 homolog 1 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
E        18787073 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        18766889 transcription elongation factor SPT6-like	K11292 SUPT6H; transcription elongation factor SPT6 
E        18769649 transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        18769853 polyadenylation and cleavage factor homolog 4 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        18779372 polyadenylation and cleavage factor homolog 4 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        18787193 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        18787995 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        18793791 cleavage and polyadenylation specificity factor subunit 3-I isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        18779713 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        18786222 uncharacterized protein LOC18786222 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        18772173 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18772898 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18773380 serine/threonine-protein phosphatase PP1 isozyme 1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18777185 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18786800 serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18793081 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        18772563 uncharacterized protein LOC18772563	K06100 SYMPK; symplekin 
E        18789207 uncharacterized protein LOC18789207 isoform X1	K06100 SYMPK; symplekin 
E        18777195 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        18792164 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        18777549 decapping nuclease DXO homolog, chloroplastic	K14845 RAI1; RAT1-interacting protein 
E        18769698 regulation of nuclear pre-mRNA domain-containing protein 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        18772653 regulation of nuclear pre-mRNA domain-containing protein 1A	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        18782105 UPF0400 protein C337.03 isoform X2	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        18793642 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        18784174 protein PAF1 homolog isoform X2	K15174 PAF1; RNA polymerase II-associated factor 1 
E        18790674 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        18791483 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        18771778 protein CTR9 homolog isoform X1	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        18777201 protein LEO1 homolog isoform X1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        18775213 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        18783786 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        18781873 ELL-associated factor 2 isoform X2	K15186 EAF; ELL-associated factor 
E        18793334 ELL-associated factor 2	K15186 EAF; ELL-associated factor 
E        109948942 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        18779472 cyclin-T1-3 isoform X3	K15188 CCNT; cyclin T 
E        18791262 cyclin-T1-4 isoform X4	K15188 CCNT; cyclin T 
E        18793634 cyclin-T1-3	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        109948942 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        18779472 cyclin-T1-3 isoform X3	K15188 CCNT; cyclin T 
E        18791262 cyclin-T1-4 isoform X4	K15188 CCNT; cyclin T 
E        18793634 cyclin-T1-3	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        18769193 probable RNA methyltransferase At5g51130	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        18767561 la-related protein 6C	K15191 LARP7; La-related protein 7 
E        18769408 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        18778531 la-related protein 6A	K15191 LARP7; La-related protein 7 
E        109948942 cyclin-T1-3-like	K15188 CCNT; cyclin T 
E        18779472 cyclin-T1-3 isoform X3	K15188 CCNT; cyclin T 
E        18791262 cyclin-T1-4 isoform X4	K15188 CCNT; cyclin T 
E        18793634 cyclin-T1-3	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        18774613 TATA-binding protein-associated factor BTAF1 isoform X2	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        18777223 protein Dr1 homolog	K21751 DR1; down-regulator of transcription 1 
E        18786464 dr1-associated corepressor homolog	K21752 DRAP1; Dr1-associated corepressor 
E        18773770 protein SPT2 homolog	K15193 SPTY2D1; protein SPT2 
E        18784631 protein spt2	K15193 SPTY2D1; protein SPT2 
E        18772338 RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        18781340 RNA polymerase II C-terminal domain phosphatase-like 1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        18771894 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        18793108 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        18775413 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        18779514 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        18780562 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        18787149 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        18777281 protein IWS1 homolog 1	K17498 SPN1; transcription factor SPN1 
E        18767645 transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        18775303 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        109947818 uncharacterized protein LOC109947818 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        18775168 RNA polymerase II-associated protein 3 isoform X3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        18784342 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        18789757 GPN-loop GTPase 1	K24104 GPN; GPN-loop GTPase 
E        18792237 GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        18775407 RNA-directed DNA methylation 4 isoform X4	K28237 SLC7A6OS; RNA polymerase II nuclear localization protein 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        18773977 DNA-directed RNA polymerase III subunit 1 isoform X2	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        18787298 DNA-directed RNA polymerase III subunit 2 isoform X1	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        18775391 DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        18781503 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        18785025 DNA-directed RNA polymerase III subunit RPC3 isoform X1	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        18769605 uncharacterized protein LOC18769605	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        18785477 DNA-directed RNA polymerase III subunit rpc4 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        18771341 DNA-directed RNA polymerase III subunit RPC5	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        18777799 DNA-directed RNA polymerase III subunit rpc6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        18793387 DNA-directed RNA polymerase III subunit rpc6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        18790327 DNA-directed RNA polymerase III subunit RPC7	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        18785737 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        18789461 uncharacterized protein LOC18789461	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        109947695 DNA-directed RNA polymerase III subunit RPC10-like	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        18770632 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18785416 DNA-directed RNA polymerase V subunit 5C	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18786301 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18787557 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18766058 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        18771697 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        18772687 DNA-directed RNA polymerases II and V subunit 8A	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18778776 DNA-directed RNA polymerases II and V subunit 8A	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18777155 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        18781304 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        18788912 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        18769594 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
E        18790504 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        18771628 TATA-box-binding protein 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18772388 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18778322 plant-specific TFIIB-related protein PTF2	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        18792126 transcription factor IIIB 60 kDa subunit isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        18767754 transcription factor TFIIIB component B'' homolog isoform X1	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        18768713 uncharacterized protein LOC18768713 isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        18783623 uncharacterized protein LOC18783623 isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        18770217 uncharacterized protein LOC18770217 isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        18768563 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        18771011 general transcription factor 3C polypeptide 5 isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        18778831 general transcription factor 3C polypeptide 6	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        18771011 general transcription factor 3C polypeptide 5 isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        18768563 general transcription factor 3C polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        18789823 uncharacterized protein LOC18789823 isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        18784365 snRNA-activating protein complex subunit isoform X1	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        18792264 repressor of RNA polymerase III transcription MAF1 homolog	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        18769224 DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        18791136 DNA-directed RNA polymerase I subunit 2 isoform X1	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        18775391 DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        18781503 DNA-directed RNA polymerases I and III subunit RPAC2	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        18783495 DNA-directed RNA polymerase I subunit rpa49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        18774111 DNA-directed RNA polymerase I subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        18770632 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18785416 DNA-directed RNA polymerase V subunit 5C	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18786301 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18787557 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        18766058 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        18771697 DNA-directed RNA polymerases II, IV and V subunit 6A	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        18772687 DNA-directed RNA polymerases II and V subunit 8A	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18778776 DNA-directed RNA polymerases II and V subunit 8A	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        18777155 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        18781304 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        18788912 DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        18771628 TATA-box-binding protein 1 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        18772388 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        18776798 high mobility group B protein 6	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        18771177 RNA polymerase I-specific transcription initiation factor RRN3 isoform X2	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        18771590 LOW QUALITY PROTEIN: RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        18767411 upstream activation factor subunit UAF30 isoform X1	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        18783862 transcription elongation factor SPT4 homolog 1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        18766870 putative transcription elongation factor SPT5 homolog 1 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
E        18787073 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        18789607 ISWI chromatin-remodeling complex ATPase CHR11	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        9978759 rpoA; RNA polymerase alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        9978703 rpoB; RNA polymerase beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        9978701 rpoC2; RNA polymerase beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        9978702 rpoC1; RNA polymerase beta	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
D      Sigma factors
E        18786813 RNA polymerase sigma factor sigA	K03086 rpoD; RNA polymerase primary sigma factor 
E        18784841 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial	K03093 sigI; RNA polymerase sigma-I factor 
E        18792075 RNA polymerase sigma factor sigC isoform X1	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        18769700 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        18769716 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        18777113 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        18781627 transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
E        18783011 transcription initiation factor IIB isoform X2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        18775929 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#<hr>
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#Last updated: April 17, 2025