+E Ribosome biogenesis KO
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Ribosome Biogenesis - Pseudoalteromonas phenolica
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D PP2015_1953 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D PP2015_252 Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C PP2015_1952 GTPase Era K03595 era; GTPase
C PP2015_2775 GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C PP2015_3282 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C PP2015_550 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
C PP2015_1029 Transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C PP2015_2681 N utilization substance-like protein K03625 nusB; transcription antitermination protein NusB
C PP2015_190 Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D PP2015_2814 Pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PP2015_47 Pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PP2015_983 Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PP2015_17 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PP2015_3924 Fmu (Sun) domain-containing protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PP2015_2754 Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PP2015_2793 Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PP2015_2454 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PP2015_1747 Ribosomal RNA small subunit methyltransferase F K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D PP2015_3379 Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PP2015_352 Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PP2015_322 Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PP2015_2858 Ribosomal RNA small subunit methyltransferase J K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D PP2015_1400 23S rRNA m1G745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D PP2015_386 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PP2015_1343 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D PP2015_4090 Ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D PP2015_2732 Ribosomal RNA large subunit methyltransferase G K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D PP2015_2661 Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PP2015_1840 Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PP2015_3408 Methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PP2015_528 Ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D PP2015_1777 Ribosomal RNA large subunit methyltransferase K/L K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D PP2015_2626 Ribosomal RNA large subunit methyltransferase M K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D PP2015_505 Dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PP2015_2117 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D PP2015_1767 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PP2015_2439 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PP2015_1852 Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PP2015_1980 Pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D PP2015_868 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PP2015_1488 Pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D PP2015_4171 Pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C PP2015_2492 alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C PP2015_1116 30S ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C PP2015_2959 RimK domain-containing protein ATP-grasp K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C PP2015_697 putative alpha-L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C PP2015_2508 Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C PP2015_1199 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C PP2015_2798 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C PP2015_2547 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C PP2015_1484 RmlC-like domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C PP2015_1953 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C PP2015_1981 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C PP2015_228 Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C PP2015_2457 Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C PP2015_682 DEAD/DEAH box helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C PP2015_71 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C PP2015_839 ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C PP2015_2705 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C PP2015_1952 GTPase Era K03595 era; GTPase
C PP2015_251 Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C PP2015_512 GTPase Der K03977 engA; GTPase
C PP2015_2775 GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
C PP2015_3227 GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A
C PP2015_2828 GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C PP2015_1180 Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C PP2015_24 Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C PP2015_2915 Bifunctional: (P)ppGpp synthetase II guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C PP2015_1031 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C PP2015_1028 Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C PP2015_175 Ribosome-associated protein K14761 rlbA; ribosome-associated protein
C PP2015_2660 Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
C PP2015_2647 Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
C PP2015_1342 RNA binding protein K07574 yhbY; RNA-binding protein
C PP2015_286 ABC transporter ATP-binding protein K09889 yjgA; ribosome-associated protein
C PP2015_1555 Ribosome modulation factor K03812 rmf; ribosome modulation factor
C PP2015_292 Ribosome hibernation promoting factor HPF K05808 hpf; ribosome hibernation promoting factor
C PP2015_754 Ribosomal subunit interface protein K05809 raiA; ribosome-associated inhibitor A
C PP2015_2642 Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C PP2015_1977 Putative metal-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 2, 2025