+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Pseudomonas putida ND6

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D YSA_02779 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases D YSA_10046 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D YSA_03911 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C YSA_02777 GTP-binding protein Era K03595 era; GTPase C YSA_06448 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C YSA_03341 C4-type zinc finger DksA/TraR family protein K06204 dksA; RNA polymerase-binding transcription factor C YSA_01341 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor C ND072 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor C YSA_03388 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA C YSA_06056 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB C YSA_05911 transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D YSA_02827 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D YSA_05813 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D YSA_05099 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D YSA_06588 rRNA -methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D YSA_04363 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D YSA_04073 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D YSA_05045 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D YSA_03003 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D YSA_03008 uroporphyrin-III C/tetrapyrrole methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D YSA_02624 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D YSA_02606 RRNA -methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D YSA_03872 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D YSA_03404 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D YSA_07036 putative SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D YSA_03235 rRNA -methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D YSA_03726 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D YSA_04386 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D YSA_08218 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D YSA_03984 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D YSA_01589 23S rRNA mG-2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D YSA_01549 Ribosomal RNA large subunit methyltransferase M K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D YSA_06785 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D YSA_02469 23S rRNA 5-methyluridine methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D YSA_01557 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D YSA_02320 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D YSA_07906 RNA-binding S4 domain-containing protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D YSA_01922 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D YSA_06293 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D YSA_03668 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D YSA_07459 RNA-binding S4 domain-containing protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C YSA_06462 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C YSA_05480 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C YSA_02721 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C YSA_07475 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C YSA_09577 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C YSA_03747 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C YSA_02097 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C YSA_08736 cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C YSA_02779 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C YSA_01924 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] C YSA_06967 ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-] C YSA_04093 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C YSA_04002 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C YSA_02020 DEAD-box ATP dependent DNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C YSA_07841 DEAD/DEAH box helicase domain-containing protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C YSA_02777 GTP-binding protein Era K03595 era; GTPase C YSA_03914 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C YSA_06796 GTP-binding protein EngA K03977 engA; GTPase C YSA_06448 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C YSA_03898 GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C YSA_05108 SUA5/yciO/yrdC domain-containing protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C YSA_04843 ppGpp synthetase I SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C YSA_03384 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C YSA_03391 hypothetical protein K09748 rimP; ribosome maturation factor RimP C YSA_03727 iojap-like protein K09710 ybeB; ribosome-associated protein C YSA_03689 putative metalloprotease K07042 ybeY; probable rRNA maturation factor C YSA_03405 hypothetical protein K07574 yhbY; RNA-binding protein C YSA_06976 hypothetical protein K09889 yjgA; ribosome-associated protein C YSA_01592 ribosome modulation factor K03812 rmf; ribosome modulation factor C YSA_06992 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor C YSA_06508 GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase C YSA_01915 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024