+F Repair protein KO #

  DNA Repair and Recombination Proteins - Phaeobacter piscinae

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PhaeoP14_00495 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PhaeoP14_01294 phrB; deoxyribodipyrimidine photo-lyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PhaeoP14_01590 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PhaeoP14_03152 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PhaeoP14_02676 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PhaeoP14_03046 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PhaeoP14_03269 putative mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PhaeoP14_03296 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PhaeoP14_00228 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PhaeoP14_02408 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PhaeoP14_00495 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PhaeoP14_00194 putative methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PhaeoP14_02675 HTH-type transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PhaeoP14_01294 phrB; deoxyribodipyrimidine photo-lyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PhaeoP14_03018 hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D PhaeoP14_03259 alkB; alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E PhaeoP14_01590 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PhaeoP14_00224 putative uracil DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PhaeoP14_03517 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PhaeoP14_01545 putative DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PhaeoP14_03152 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PhaeoP14_02014 putative DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PhaeoP14_03458 mutM; formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PhaeoP14_02676 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PhaeoP14_03130 putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PhaeoP14_01025 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E PhaeoP14_00784 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PhaeoP14_01340 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PhaeoP14_00070 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PhaeoP14_01635 uvrA; uvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E PhaeoP14_03728 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E PhaeoP14_02358 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E PhaeoP14_00206 uvrC; uvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E PhaeoP14_00865 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PhaeoP14_00070 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E PhaeoP14_01340 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PhaeoP14_02910 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PhaeoP14_02909 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PhaeoP14_02870 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PhaeoP14_02953 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PhaeoP14_01396 mfd; transcription-repair-coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PhaeoP14_03309 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PhaeoP14_03074 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E PhaeoP14_02146 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PhaeoP14_03222 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PhaeoP14_02571 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PhaeoP14_00002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PhaeoP14_01789 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PhaeoP14_03139 DNA polymerase 3-like protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PhaeoP14_00721 DNA polymerase III, gamma/tau subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PhaeoP14_03326 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PhaeoP14_00608 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PhaeoP14_02798 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PhaeoP14_01340 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PhaeoP14_00865 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PhaeoP14_01315 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PhaeoP14_01430 recA; protein recA (recombinase A) K03553 recA; recombination protein RecA E PhaeoP14_00508 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PhaeoP14_00509 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PhaeoP14_00507 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PhaeoP14_00501 priA; primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E PhaeoP14_01430 recA; protein recA (recombinase A) K03553 recA; recombination protein RecA E PhaeoP14_01002 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E PhaeoP14_00003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E PhaeoP14_01341 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PhaeoP14_00784 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PhaeoP14_02944 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PhaeoP14_02801 recR; recombination protein RecR K06187 recR; recombination protein RecR E PhaeoP14_00892 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PhaeoP14_00508 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PhaeoP14_00509 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PhaeoP14_00507 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E PhaeoP14_03340 addA; double strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E PhaeoP14_03341 addB; double strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E PhaeoP14_01498 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PhaeoP14_01418 gyrA; DNA gyrase subunit GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PhaeoP14_00007 gyrB; DNA gyrase subunit GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PhaeoP14_00544 topA; DNA topoisomerase TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F PhaeoP14_03514 DNA topoisomerase 1B-like protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PhaeoP14_03233 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PhaeoP14_00784 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PhaeoP14_02944 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PhaeoP14_02801 recR; recombination protein RecR K06187 recR; recombination protein RecR F PhaeoP14_01340 ligA; DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PhaeoP14_01040 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F PhaeoP14_00403 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F PhaeoP14_00058 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PhaeoP14_01635 uvrA; uvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F PhaeoP14_03728 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F PhaeoP14_02358 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F PhaeoP14_03739 putative regulatory protein, H-NS histone family K03746 hns; DNA-binding protein H-NS F PhaeoP14_00301 putative regulatory protein, H-NS histone family K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PhaeoP14_03047 Nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D PhaeoP14_01430 recA; protein recA (recombinase A) K03553 recA; recombination protein RecA D PhaeoP14_01594 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D PhaeoP14_00892 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PhaeoP14_03019 protein imuB-like protein K14161 imuB; protein ImuB D PhaeoP14_03020 dnaE1; DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PhaeoP14_01315 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PhaeoP14_00423 Superfamily I DNA and RNA helicase K03658 helD; DNA helicase IV [EC:5.6.2.4] D PhaeoP14_00526 putative DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D PhaeoP14_03046 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PhaeoP14_03269 putative mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PhaeoP14_03296 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PhaeoP14_00228 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PhaeoP14_02408 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PhaeoP14_01576 nrdJ; vitamin B12-dependent ribonucleotide reductase NrdJ K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PhaeoP14_00614 putative adenosylcobalamin(B12)-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024