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Transcription Machinery - Pseudomonas protegens CHA0
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E PFLCHA0_c32280 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E PFLCHA0_c55100 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E PFLCHA0_c55420 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E PFLCHA0_c55410 rpoC; DNA-directed RNA polymerase subunit beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E PFLCHA0_c60210 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E PFLCHA0_c56160 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E PFLCHA0_c12280 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E PFLCHA0_c14840 algU; RNA polymerase sigma-H factor AlgU K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLCHA0_c15720 algT; putative RNA polymerase sigma-H factor AlgT K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLCHA0_c19070 sigX; ECF sigma factor SigX K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLCHA0_c46330 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLCHA0_c56700 sigK; RNA polymerase sigma factor SigK K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLCHA0_c01750 RNA polymerase sigma-70 factor, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E PFLCHA0_c33420 RNA polymerase sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLCHA0_c56550 fecI8; putative RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLCHA0_c10040 fecI3; putative RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLCHA0_c01450 fecI1; putative RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLCHA0_c24280 fecI5; putative RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLCHA0_c23560 fecI4; putative RNA polymerase sigma factor FecI K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E PFLCHA0_c58080 rpoH; RNA polymerase sigma-32 factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
E PFLCHA0_c09290 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
E PFLCHA0_c17050 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E PFLCHA0_c13420 rapA; RNA polymerase-associated protein RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E PFLCHA0_c08570 nusA; transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA
E PFLCHA0_c54700 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
E PFLCHA0_c55470 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E PFLCHA0_c50520 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
E PFLCHA0_c50510 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B
E PFLCHA0_c20270 response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E PFLCHA0_c14850 mucA; sigma factor AlgU negative regulatory protein MucA K03597 rseA; sigma-E factor negative regulatory protein RseA
E PFLCHA0_c14860 mucB; sigma factor AlgU regulatory protein MucB K03598 rseB; sigma-E factor negative regulatory protein RseB
D Transcription elongation factors
E PFLCHA0_c61350 dksA3; putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
E PFLCHA0_c26610 dksA1; transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
E PFLCHA0_c52420 dksA2; DnaK suppressor protein DksA K06204 dksA; RNA polymerase-binding transcription factor
E PFLCHA0_c08460 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E PFLCHA0_c43460 greB1; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E PFLCHA0_c59380 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024