+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Poeciliopsis prolifica (blackstripe livebearer)
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 129354175 LOW QUALITY PROTEIN: mRNA cap guanine-N7 methyltransferase-like K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 129356565 mRNA cap guanine-N7 methyltransferase-like K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 129375384 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 129371927 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 129351213 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 129364016 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 129369458 RNA guanine-N7 methyltransferase activating subunit-like K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 129360649 nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 129360652 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 129373212 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 129363959 nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 129369645 cleavage and polyadenylation specificity factor subunit 7-like K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 129375482 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 129362688 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 129370662 pcf11; LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 129376276 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 129375345 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 129354527 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 129374671 cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 129363545 cpsf4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 129370107 fip1l1a; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 129351673 LOW QUALITY PROTEIN: pre-mRNA 3' end processing protein WDR33-like K15542 PFS2; polyadenylation factor subunit 2
E 129355342 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 129356302 WD repeat-containing protein 82-like K14962 WDR82; COMPASS component SWD2
E 129365452 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 129372954 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit A K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 129373720 ppp1caa; protein phosphatase 1, catalytic subunit, alpha isozyme a K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 129377703 serine/threonine-protein phosphatase alpha-2 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 129378346 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 129356037 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 129354872 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 129360242 cleavage stimulation factor subunit 2-like isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 129360824 cleavage stimulation factor subunit 2-like isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 129364439 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 129355991 symplekin-like isoform X1 K06100 SYMPK; symplekin
E 129374429 LOW QUALITY PROTEIN: symplekin-like K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 129356279 LOW QUALITY PROTEIN: small nuclear ribonucleoprotein-associated protein B'-like K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 129366498 snrpd3l; small nuclear ribonucleoprotein D3 polypeptide, like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 129354519 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 129351477 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 129371753 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 129375753 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 129362622 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 129375345 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 129354527 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 129374671 cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 129360242 cleavage stimulation factor subunit 2-like isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 129360824 cleavage stimulation factor subunit 2-like isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 129355991 symplekin-like isoform X1 K06100 SYMPK; symplekin
E 129374429 LOW QUALITY PROTEIN: symplekin-like K06100 SYMPK; symplekin
E 129354125 slbp; histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 129370652 slbp2; stem-loop binding protein 2 K18710 SLBP; histone RNA hairpin-binding protein
E 129369227 casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 129368447 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 129358909 supt5h; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 129379382 mettl3; N6-adenosine-methyltransferase subunit METTL3 isoform X1 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 129364513 mettl4; N(6)-adenine-specific methyltransferase METTL4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 129359171 mettl16; RNA N6-adenosine-methyltransferase mettl16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 129352461 wtap; pre-mRNA-splicing regulator WTAP isoform X1 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 129371257 virma; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 129356368 LOW QUALITY PROTEIN: putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 129358136 RNA-binding protein 15-like K13190 RBM15; RNA-binding protein 15
E 129372271 rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 129372786 LOW QUALITY PROTEIN: putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 129379094 zc3h13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 129376085 cbll1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 129359839 papolg; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 129371962 tent2; poly(A) RNA polymerase GLD2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 129377546 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 129360996 bard1; BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 129369606 rbm26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 129364065 fto; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 129376886 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 129353310 tardbpb; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 129372462 tardbpa; TAR DNA binding protein, like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 129359434 dhx40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 129351931 kin; DNA/RNA-binding protein KIN17 isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17
D 129360951 mettl8; mRNA N(3)-methylcytidine methyltransferase METTL8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 129363511 mettl22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 129367675 tent5ba; terminal nucleotidyltransferase 5ba K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 129367699 tent5aa; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 129369230 tent5ab; terminal nucleotidyltransferase 5Ab K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 129376342 terminal nucleotidyltransferase 5B-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 129361374 tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 129351168 zc3h14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 129368731 srrt; serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
D 129376765 LOW QUALITY PROTEIN: serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 129370798 rbm8a; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 129379700 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 129363707 alyref; THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4
E 129367013 aly/REF export factor 2-like isoform X1 K12881 THOC4; THO complex subunit 4
E 129356043 LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III-like K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 129356424 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 129358157 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 129374034 casc3; protein CASC3 K14323 CASC3; protein CASC3
E 129379062 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 129365514 pnn; pinin K13114 PNN; pinin
E 129361708 acin1a; LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 129379389 acin1b; apoptotic chromatin condensation inducer 1b K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 129363542 RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 129365114 srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 129362184 thoc1; THO complex subunit 1 isoform X1 K12878 THOC1; THO complex subunit 1
E 129368493 thoc2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 129362405 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 129363707 alyref; THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4
E 129367013 aly/REF export factor 2-like isoform X1 K12881 THOC4; THO complex subunit 4
E 129372199 thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 129373779 thoc6; THO complex subunit 6 homolog isoform X1 K13175 THOC6; THO complex subunit 6
E 129358236 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
E 129352818 chtopa; chromatin target of PRMT1a isoform X1 K28424 CHTOP; chromatin target of PRMT1 protein
D TREX-2 complex
E 129354805 PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 129378494 sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 129367550 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 129362885 cetn2; uncharacterized protein cetn2 K10840 CETN2; centrin-2
E 129379737 cetn3; centrin-3 K16466 CETN3; centrin-3
E 129355979 LOW QUALITY PROTEIN: germinal-center associated nuclear protein-like K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 129361623 tpra; nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 129371756 tprb; translocated promoter region b, nuclear basket protein isoform X1 K09291 TPR; nucleoprotein TPR
E 129355288 rae1; mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 129372890 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 129351493 nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 129363746 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 129375295 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 129352893 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 129374254 nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 129361518 nup62l; nucleoporin 62 like K14306 NUP62; nuclear pore complex protein Nup62
E 129359418 nup88; nucleoporin 88 K14318 NUP88; nuclear pore complex protein Nup88
E 129356231 nuclear pore complex protein Nup93-like isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 129359849 LOW QUALITY PROTEIN: nuclear pore complex protein Nup93-like K14309 NUP93; nuclear pore complex protein Nup93
E 129370609 nup98; nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 129351898 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 129374337 nup188; LOW QUALITY PROTEIN: nucleoporin NUP188 K14311 NUP188; nuclear pore complex protein Nup188
E 129374975 nup153; nuclear pore complex protein Nup153 K14296 NUP153; nuclear pore complex protein Nup153
E 129366592 nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 129365406 nup160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 129379124 nup35; nucleoporin NUP35 isoform X1 K14313 NUP35; nuclear pore complex protein Nup53
E 129355765 LOW QUALITY PROTEIN: nuclear pore complex protein Nup205-like K14310 NUP205; nuclear pore complex protein Nup205
E 129362476 LOW QUALITY PROTEIN: nuclear pore complex protein Nup205-like K14310 NUP205; nuclear pore complex protein Nup205
E 129370429 nup210; nuclear pore membrane glycoprotein 210 isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 129366308 nup214; nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 129354017 pom121; nuclear envelope pore membrane protein POM 121 K14316 POM121; nuclear pore complex protein Nup121
E 129364537 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 129378495 nup42; nucleoporin NUP42 K14321 NUPL2; nucleoporin-like protein 2
E 129377996 ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 129367445 seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 129361034 ranbp2; E3 SUMO-protein ligase RanBP2 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 129365356 senp2; sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 129370321 aaas; aladin isoform X1 K14320 AAAS; aladin
E 129379737 cetn3; centrin-3 K16466 CETN3; centrin-3
E 129366092 gle1; LOW QUALITY PROTEIN: mRNA export factor GLE1 K18723 GLE1; nucleoporin GLE1
E 129362455 nxf1a; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 129362425 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 129362395 ran; GTP-binding nuclear protein Ran isoform X1 K07936 RAN; GTP-binding nuclear protein Ran
E 129369479 anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 129351100 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 129351102 acidic leucine-rich nuclear phosphoprotein 32 family member B-like isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 129351369 acidic leucine-rich nuclear phosphoprotein 32 family member D-like isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 129376581 acidic leucine-rich nuclear phosphoprotein 32 family member A-like isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 129365563 elavl1a; ELAV-like protein 1a isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 129373763 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 129352525 LOW QUALITY PROTEIN: ELAV-like protein 3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 129363536 elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 129371188 elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 129373231 elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 129362849 faf2; FAS-associated factor 2 isoform X1 K18726 FAF2; FAS-associated factor 2
E 129367199 zgc:136908; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 129372051 vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 129365212 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 129363457 transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 129367029 tnpo2b; LOW QUALITY PROTEIN: transportin-2 K18727 TNPO2; transportin-2
E 129359755 xpo1b; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 129379798 xpo7; exportin-7 K18460 XPO7; exportin-7
E 129363809 rangap1a; ran GTPase-activating protein 1a isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 129377529 rangap1b; ran GTPase-activating protein 1b K14319 RANGAP1; Ran GTPase-activating protein 1
E 129358790 nutf2; nuclear transport factor 2 K28773 NUTF2; nuclear transport factor 2
E 129375112 nuclear transport factor 2-like K28773 NUTF2; nuclear transport factor 2
D eIF4F and regulatory proteins
E 129360014 eif4e1c; eukaryotic translation initiation factor 4E family member 1c K03259 EIF4E; translation initiation factor 4E
E 129360312 eukaryotic translation initiation factor 4E-1A isoform X1 K03259 EIF4E; translation initiation factor 4E
E 129360316 eukaryotic translation initiation factor 4E-1A isoform X1 K03259 EIF4E; translation initiation factor 4E
E 129362085 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 129374639 eif4eb; eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 129361881 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 129378243 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 129358995 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 129361236 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b K03260 EIF4G; translation initiation factor 4G
E 129362337 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X1 K03260 EIF4G; translation initiation factor 4G
E 129364339 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 129372867 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 129352669 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 129359362 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 129366283 eukaryotic translation initiation factor 4E-binding protein 1-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 129372078 eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 129360116 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 129362632 eif4ebp3l; eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 129354904 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 129354524 angel2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 129365559 angel1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 129362417 fmr1; LOW QUALITY PROTEIN: synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 129373085 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 129378329 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 129351521 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 129362662 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 129370612 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 129374878 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 129352648 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129362575 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129369504 cytoplasmic polyadenylation element-binding protein 1-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129373444 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129379682 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129355457 ddx3xb; LOW QUALITY PROTEIN: DEAD-box helicase 3 X-linked b K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 129379122 ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 129361950 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 129373252 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 129365223 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 129367616 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 129370332 embryonic polyadenylate-binding protein B-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 129375013 polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 129365947 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 129356632 polyadenylate-binding protein-interacting protein 2-like K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 129360724 LOW QUALITY PROTEIN: polyadenylate-binding protein-interacting protein 2-like K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 129373275 paip2b; polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 129354182 skic2; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 129353402 deaf1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 129360527 malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 129360529 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 129374080 denr; LOW QUALITY PROTEIN: density-regulated protein K24272 DENR; density-regulated protein
E 129379811 density-regulated protein isoform X1 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 129368075 APOBEC1 complementation factor-like isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 129370119 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 129361153 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 129372251 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 129358164 RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 129368699 msi2b; RNA-binding protein Musashi homolog 2b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 129371938 dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 129372991 RNA-binding protein Musashi homolog 1-like isoform X1 K14411 MSI; RNA-binding protein Musashi
E 129351166 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 129377702 pelo; protein pelota homolog K06965 PELO; protein pelota
E 129364649 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 129369661 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 129356425 ddx19b; ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 129377212 ddx19a; ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 129363235 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 129376989 sarnp; SAP domain-containing ribonucleoprotein isoform X1 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 129367391 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 129364415 larp6a; la-related protein 6a K18733 LARP6; la-related protein 6
E 129378004 la-related protein 6-like K18733 LARP6; la-related protein 6
E 129362820 purab; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 129368758 puraa; purine-rich element binding protein Aa K21772 PURA; transcriptional activator protein Pur-alpha
E 129365953 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 129379842 purbb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 129363398 poldip3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 129355141 zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 129371094 leng8; leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3
E 129377771 patl2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
E 129361877 UAP56-interacting factor-like K28772 FYTTD1; UAP56-interacting factor
C Surveillance factors
D Surveillance complex
E 129362790 eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 129363322 gspt1l; G1 to S phase transition 1, like isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 129377873 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 129372360 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 129351902 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 129360754 regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
E 129360763 regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
E 129361504 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 129355294 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 129362883 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 129365993 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 129359401 ppp2r1bb; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 129359934 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 129362618 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 129362776 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 129366632 ppp2r2ab; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 129372985 ppp2r2aa; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 129360989 ppp2r3b; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 129365198 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 129365291 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 129356089 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 129369095 ppp2r5cb; protein phosphatase 2, regulatory subunit B', gamma b isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 129373225 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 129374767 ppp2r5ca; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 129375303 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 129377256 ppp2r5eb; protein phosphatase 2, regulatory subunit B', epsilon isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 129363317 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 129370981 smg5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 129373621 smg6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 129373638 LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG8-like K18734 SMG8; protein SMG8
E 129367736 nonsense-mediated mRNA decay factor SMG9 K18735 SMG9; protein SMG9
E 129361950 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 129373252 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 129365742 selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 129369557 secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 129359036 dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 129363254 gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 129376905 gtpbp1l; GTP binding protein 1, like isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 129352017 LOW QUALITY PROTEIN: pumilio homolog 3-like K14844 PUF6; pumilio homology domain family member 6
E 129353054 pumilio homolog 3-like K14844 PUF6; pumilio homology domain family member 6
E 129356207 myo5b; LOW QUALITY PROTEIN: unconventional myosin-Vb K10357 MYO5; myosin V
E 129368512 unconventional myosin-Va-like K10357 MYO5; myosin V
E 129368595 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 129369572 myo5aa; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 129371319 si:dkey-110c1.10; unconventional myosin-Va K10357 MYO5; myosin V
E 129354949 protein bicaudal D homolog 2-like K18739 BICD; protein bicaudal D
E 129355769 LOW QUALITY PROTEIN: protein bicaudal D homolog 1-like K18739 BICD; protein bicaudal D
E 129362449 LOW QUALITY PROTEIN: protein bicaudal D homolog 1-like K18739 BICD; protein bicaudal D
E 129370179 zgc:162200; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 129370442 protein bicaudal D homolog 2-like isoform X1 K18739 BICD; protein bicaudal D
E 129365362 exd1; piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 129363186 actb2; actin, cytoplasmic 2 isoform X1 K05692 ACTB_G1; actin beta/gamma 1
E 129365913 actin, cytoplasmic 1-like K05692 ACTB_G1; actin beta/gamma 1
E 129376935 actb1; actin, cytoplasmic 1 isoform X1 K05692 ACTB_G1; actin beta/gamma 1
E 129367684 myelin basic protein-like K17269 MBP; myelin basic protein
E 129367685 mbpb; myelin basic protein b isoform X1 K17269 MBP; myelin basic protein
E 129375714 mbpa; myelin basic protein isoform X1 K17269 MBP; myelin basic protein
E 129361888 LOW QUALITY PROTEIN: vimentin-like K07606 VIM; vimentin
E 129356216 metallothionein K14739 MT1_2; metallothionein 1/2
E 129360140 metallothionein K14739 MT1_2; metallothionein 1/2
E 129352704 LOW QUALITY PROTEIN: transcriptional regulator Myc-B-like K04377 MYC; Myc proto-oncogene protein
E 129356143 LOW QUALITY PROTEIN: transcriptional regulator Myc-like K04377 MYC; Myc proto-oncogene protein
E 129364770 myca; transcriptional regulator Myc-A K04377 MYC; Myc proto-oncogene protein
E 129366638 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 129373056 tbx16; T-box transcription factor 16 K10180 TBX6; T-box protein 6
E 129377823 tbx6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 129360818 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 129360829 LOW QUALITY PROTEIN: nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 129364876 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 129377332 nanos homolog 1-like K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 129366029 far upstream element-binding protein 3-like K13210 FUBP; far upstream element-binding protein
E 129366515 fubp3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 129367008 khsrp; far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 129378012 fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 129359602 eef1a1a; LOW QUALITY PROTEIN: elongation factor 1-alpha 1a K03231 EEF1A; elongation factor 1-alpha
E 129364581 eef1a1l3; LOW QUALITY PROTEIN: elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 129367289 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 129375771 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 129375772 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 129362645 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 129374946 hax1; HCLS1-associated protein X-1 isoform X1 K16220 HAX1; HCLS1-associated protein X-1
E 129358984 agfg1a; arf-GAP domain and FG repeat-containing protein 1a isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 129362201 agfg1b; arf-GAP domain and FG repeat-containing protein 1b isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 129379497 agfg2; arf-GAP domain and FG repeat-containing protein 2 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 129353471 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 129364563 stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 129378534 igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 129365138 ptbp1a; polypyrimidine tract-binding protein 1a K13218 PTBP1; polypyrimidine tract-binding protein 1
E 129375820 ptbp1b; polypyrimidine tract-binding protein 1b K13218 PTBP1; polypyrimidine tract-binding protein 1
E 129352648 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129362575 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129369504 cytoplasmic polyadenylation element-binding protein 1-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129373444 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129379682 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 129362417 fmr1; LOW QUALITY PROTEIN: synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 129373085 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 129378329 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 129351521 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 129362662 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 129354377 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 129370363 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 129352587 zgc:110045; poly(rC)-binding protein 3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 129356364 poly(rC)-binding protein 4-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 129370338 poly(rC)-binding protein 4-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 129374452 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 129378708 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 129364163 caprin1a; caprin-1a isoform X1 K18743 CAPRIN1; caprin-1
E 129366482 caprin1b; caprin-1b isoform X1 K18743 CAPRIN1; caprin-1
E 129376238 caprin2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 129372369 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 129362058 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 129370882 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 129370883 ago1; protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 129375721 ago4; LOW QUALITY PROTEIN: protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 129375930 ago3b; protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 129378488 ago2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 129360014 eif4e1c; eukaryotic translation initiation factor 4E family member 1c K03259 EIF4E; translation initiation factor 4E
E 129360312 eukaryotic translation initiation factor 4E-1A isoform X1 K03259 EIF4E; translation initiation factor 4E
E 129360316 eukaryotic translation initiation factor 4E-1A isoform X1 K03259 EIF4E; translation initiation factor 4E
E 129362085 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 129374639 eif4eb; eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 129372360 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 129355457 ddx3xb; LOW QUALITY PROTEIN: DEAD-box helicase 3 X-linked b K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 129379122 ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 129358987 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 129375787 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 129353524 RNA-binding protein MEX3A-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 129357002 RNA-binding protein MEX3A-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 129362089 LOW QUALITY PROTEIN: RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 129366001 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 129351678 LOW QUALITY PROTEIN: fas-activated serine/threonine kinase-like K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 129357443 protein LSM14 homolog B-like isoform X1 K18749 LSM14; protein LSM14
E 129364172 lsm14aa; LSM14A mRNA processing body assembly factor a isoform X1 K18749 LSM14; protein LSM14
E 129364190 lsm14ab; LSM14A mRNA processing body assembly factor b isoform X1 K18749 LSM14; protein LSM14
E 129370216 lsm14b; protein LSM14 homolog B K18749 LSM14; protein LSM14
E 129354377 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 129370363 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 129372369 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 129364373 wtip; Wilms tumor protein 1-interacting protein homolog K16682 AJUBA; LIM domain-containing protein
E 129367651 LIM domain-containing protein 1-like K16682 AJUBA; LIM domain-containing protein
E 129379391 ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 129366697 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 129372329 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 129372733 mov10a; putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 129370906 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 129374105 tnpo1; transportin-1 isoform X1 K18752 TNPO1; transportin-1
E 129363317 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 129370981 smg5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 129373621 smg6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 129358681 zgc:114130; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 129359367 mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 129359616 zfp36l2; mRNA decay activator protein ZFP36L2 isoform X1 K18753 ZFP36L; butyrate response factor
E 129365160 zfp36l1a; mRNA decay activator protein ZFP36L1a K18753 ZFP36L; butyrate response factor
E 129370979 lin28aa; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 129375357 lin28b; protein lin-28 homolog B K18754 LIN28; protein lin-28
E 129366926 htt; huntingtin isoform X1 K04533 HD; huntingtin
E 129354752 ipo8; importin-8 isoform X1 K18755 IPO8; importin-8
E 129360183 LOW QUALITY PROTEIN: protein bicaudal C homolog 1-like K18756 BICC1; protein bicaudal C
E 129362901 bicc2; bicaudal C homolog 2 K18756 BICC1; protein bicaudal C
E 129361153 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 129372251 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 129363168 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 129365798 cAMP-dependent protein kinase catalytic subunit beta-like K04345 PKA; protein kinase A [EC:2.7.11.11]
E 129366903 cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 129371377 prkacba; protein kinase, cAMP-dependent, catalytic, beta a isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 129373374 la-related protein 1-like K18757 LARP1; la-related protein 1
E 129377419 larp1b; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 129365684 atxn2; ataxin-2 isoform X1 K23625 ATXN2; ataxin-2
E 129377835 atxn2l; ataxin-2-like protein isoform X1 K23625 ATXN2; ataxin-2
D P-body specific factors
E 129379794 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 129372578 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 129375630 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 129373012 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 129371089 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 129354628 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 129372794 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 129377195 lsm4; LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 129378979 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 129374644 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 129352860 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 129359999 klc1b; kinesin light chain 1b isoform X1 K10407 KLC; kinesin light chain
E 129377255 klc1a; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 129379406 klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 129356207 myo5b; LOW QUALITY PROTEIN: unconventional myosin-Vb K10357 MYO5; myosin V
E 129368512 unconventional myosin-Va-like K10357 MYO5; myosin V
E 129368595 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 129369572 myo5aa; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 129371319 si:dkey-110c1.10; unconventional myosin-Va K10357 MYO5; myosin V
E 129354296 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 129359227 tubulin alpha chain-like isoform X1 K07374 TUBA; tubulin alpha
E 129360882 tuba8l3; LOW QUALITY PROTEIN: tubulin, alpha 8 like 3 K07374 TUBA; tubulin alpha
E 129361293 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 129361294 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 129370166 tuba5; tubulin alpha 5 K07374 TUBA; tubulin alpha
E 129371932 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 129374319 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 129376985 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 129376986 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 129376994 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 129377040 tubulin alpha-1C chain-like isoform X1 K07374 TUBA; tubulin alpha
E 129377132 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 129378707 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 129352648 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129362575 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129369504 cytoplasmic polyadenylation element-binding protein 1-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129373444 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129379682 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 129370612 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 129374878 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 129363154 tnrc6c1; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 129363224 trinucleotide repeat-containing gene 6A protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 129363833 trinucleotide repeat-containing gene 6B protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 129377868 tnrc6ba; trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 129372684 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 129352874 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 129359551 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 129371092 cnot3a; CCR4-NOT transcription complex subunit 3a K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 129375941 cnot3b; CCR4-NOT transcription complex subunit 3b K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 129360391 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 129362508 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 129366056 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 129362972 cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 129370613 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 129364188 granule associated Rac and RHOG effector protein 1-like K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 129362320 dis3l2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 129370395 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 129364784 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 129363249 tob1a; protein Tob1a K14443 TOB; protein Tob/BTG
E 129363829 protein Tob2 K14443 TOB; protein Tob/BTG
E 129367394 maternal B9.15 protein-like K14443 TOB; protein Tob/BTG
E 129368800 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 129370645 btg4; protein BTG4 isoform X1 K14443 TOB; protein Tob/BTG
E 129375574 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 129377535 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 129354904 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 129355582 LOW QUALITY PROTEIN: protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 129361436 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 129358733 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 129367092 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 129351902 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 129360754 regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
E 129360763 regulator of nonsense transcripts 3B-like K14328 UPF3; regulator of nonsense transcripts 3
E 129361504 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 129376293 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 129362648 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 129359967 interferon-induced, double-stranded RNA-activated protein kinase-like K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 129360146 interferon-induced, double-stranded RNA-activated protein kinase-like K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 129372627 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 129373392 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 129364836 ythdf3; YTH domain-containing family protein 3 K20102 YTHDF; YTH domain-containing family protein
E 129370147 YTH domain-containing family protein 1-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 129370327 YTH domain-containing family protein 1-like K20102 YTHDF; YTH domain-containing family protein
E 129374662 ythdf2; YTH domain-containing family protein 2 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 129352602 tial1; nucleolysin TIAR K13201 TIA1; nucleolysin TIA-1/TIAR
E 129372995 cytotoxic granule associated RNA binding protein TIA1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 129374120 cytotoxic granule associated RNA binding protein TIA1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 129365223 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 129367616 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 129370332 embryonic polyadenylate-binding protein B-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 129375013 polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 129353471 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 129364563 stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 129362417 fmr1; LOW QUALITY PROTEIN: synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 129373085 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 129378329 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 129365563 elavl1a; ELAV-like protein 1a isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 129373763 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 129360753 ras GTPase-activating protein-binding protein 1-like isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 129360757 ras GTPase-activating protein-binding protein 1-like isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 129351112 g3bp2a; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 129359052 eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 129353736 eif3ba; eukaryotic translation initiation factor 3, subunit Ba K03253 EIF3B; translation initiation factor 3 subunit B
E 129361881 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 129378243 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 129356043 LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III-like K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 129356424 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 129352669 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 129358995 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 129361236 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b K03260 EIF4G; translation initiation factor 4G
E 129362337 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X1 K03260 EIF4G; translation initiation factor 4G
E 129364339 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 129372867 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 129354388 LOW QUALITY PROTEIN: ribosomal protein S6 kinase alpha-3-like K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 129362660 ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 129364227 ribosomal protein S6 kinase alpha-2-like K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 129374726 rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 129362490 rack1; guanine nucleotide-binding protein subunit beta-2-like 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 129351631 TNF receptor-associated factor 2-like K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 129366457 traf2b; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 129374289 TNF receptor-associated factor 2-like K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 129362455 nxf1a; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 129352934 hdac6; LOW QUALITY PROTEIN: histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 129354452 LOW QUALITY PROTEIN: histone deacetylase 6-like K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 129369679 tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 129353116 larp4b; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
E 129357716 larp4ab; la-related protein 4 K18763 LARP4; la-related protein 4
E 129372394 la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 129378968 la-related protein 4B-like K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 129372578 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 129375630 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 129379794 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 129358987 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 129375787 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 129361436 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 129358733 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 129355582 LOW QUALITY PROTEIN: protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 129373012 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 129371089 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 129354628 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 129372794 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 129377195 lsm4; LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 129378979 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 129374644 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 129352860 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 129362058 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 129353657 xrn2; LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 129371752 zgc:103759; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 129362827 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 129366952 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 129366895 exosc1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
E 129366415 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 129354344 exosome complex component RRP40-like K03681 RRP40; exosome complex component RRP40
E 129360295 uncharacterized protein LOC129360295 K03681 RRP40; exosome complex component RRP40
E 129361654 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 129359224 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 129367463 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 129354172 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 129373443 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 129367094 exosc9; exosome complex component RRP45 isoform X1 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 129359862 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 129355541 LOW QUALITY PROTEIN: DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 129372537 exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 129359898 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 129362187 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 129364419 tent4b; terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 129367642 terminal nucleotidyltransferase 4A-like K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 129376278 tent4a; LOW QUALITY PROTEIN: terminal nucleotidyltransferase 4A K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 129362428 zcchc7; zinc finger CCHC domain-containing protein 7 isoform X1 K12597 AIR1_2; protein AIR1/2
E 129374228 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 129354182 skic2; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 129371913 skic3; tetratricopeptide repeat protein 37 isoform X1 K12600 SKI3; superkiller protein 3
E 129366397 skic8; SKI8 subunit of superkiller complex protein K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 129362508 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 129366056 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 129372684 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 129352874 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 129359551 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 129371092 cnot3a; CCR4-NOT transcription complex subunit 3a K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 129375941 cnot3b; CCR4-NOT transcription complex subunit 3b K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 129360391 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 129362972 cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 129370613 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 129355960 LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 9-like K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 129374516 CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 129353751 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 129370395 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 129364784 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 129376893 parn; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 129370013 dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 129363249 tob1a; protein Tob1a K14443 TOB; protein Tob/BTG
E 129363829 protein Tob2 K14443 TOB; protein Tob/BTG
E 129367394 maternal B9.15 protein-like K14443 TOB; protein Tob/BTG
E 129368800 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 129370645 btg4; protein BTG4 isoform X1 K14443 TOB; protein Tob/BTG
E 129375574 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 129377535 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 129353840 nocta; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 129367065 noctb; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 129351560 eri1; 3'-5' exoribonuclease 1 isoform X1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 129376860 eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 129362827 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 129372897 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 129366350 ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 129366952 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 129355085 LOW QUALITY PROTEIN: helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 129365524 nrde2; nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 129364126 LOW QUALITY PROTEIN: protein Smaug homolog 1-like K27396 SMG; protein Smaug
E 129369753 LOW QUALITY PROTEIN: protein Smaug homolog 2 K27396 SMG; protein Smaug
E 129378159 focad; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 129355463 ribonuclease-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 129357725 LOW QUALITY PROTEIN: probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 129368849 zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 129370982 endoribonuclease ZC3H12A isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 129379078 LOW QUALITY PROTEIN: probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 129378871 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 129354015 smfn; small fragment nuclease isoform X1 K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 129354035 eno1b; enolase 1b, (alpha) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 129372450 eno1a; enolase 1a, (alpha) isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 129375802 gamma-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 129376677 beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 129360177 polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 129353106 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 129357666 pfkmb; phosphofructokinase, muscle b K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 129361233 pfkla; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 129364668 pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 129372395 pfkma; phosphofructokinase, muscle a K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 129353857 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 129379208 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 129366415 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 129366895 exosc1; exosome complex component CSL4 isoform X1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 129361654 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 129354172 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 26, 2026