+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Pimephales promelas (fathead minnow)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 120485401 mRNA cap guanine-N7 methyltransferase-like K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 120485452 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 120474125 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 120471755 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 120463479 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 120469948 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 120484853 RNA guanine-N7 methyltransferase activating subunit-like K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 120460845 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 120468643 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 120487815 nudt21; cleavage and polyadenylation specificity factor subunit 5 isoform X1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 120470898 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 120461161 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 120494682 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 120485374 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 120492100 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 120493962 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 120489972 cpsf4; cleavage and polyadenylation specificity factor subunit 4 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 120493738 fip1l1a; pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 120481292 fip1l1b; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 120461356 wdr33; LOW QUALITY PROTEIN: pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2
E 120491599 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 120489500 ppp1caa; protein phosphatase 1, catalytic subunit, alpha isozyme a K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 120492853 ppp1cab; protein phosphatase 1, catalytic subunit, alpha isozyme b K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 120471633 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit A K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 120494687 ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 120480139 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 120486479 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 120480811 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 120465751 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 120459960 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 120472028 sympk; symplekin isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 120494269 snrpb; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 120476981 snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 120477309 snrpd3l; small nuclear ribonucleoprotein D3 polypeptide, like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 120480407 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 120469836 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 120463422 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 120483686 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 120474351 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 120492100 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 120493962 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 120465751 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 120472028 sympk; symplekin isoform X1 K06100 SYMPK; symplekin
E 120464397 histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 120494714 slbp2; stem-loop binding protein 2 K18710 SLBP; histone RNA hairpin-binding protein
E 120493853 casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 120471594 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 120479017 supt5h; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 120469320 mettl3; N6-adenosine-methyltransferase subunit METTL3 isoform X1 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 120493732 mettl14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 120477379 N(6)-adenine-specific methyltransferase METTL4-like K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 120477381 N(6)-adenine-specific methyltransferase METTL4-like K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 120478874 mettl16; RNA N6-adenosine-methyltransferase mettl16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 120494043 pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 120484337 virma; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 120469101 rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 120477162 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 120479709 zc3h13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 120476987 cbll1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
E 120469121 LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Hakai K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 120493450 papola; poly(A) polymerase alpha isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 120473300 papolg; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 120472338 tent2; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 120470403 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 120460817 rbm26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 120468561 fto; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 120460539 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 120459826 tardbpb; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
E 120463715 tardbpa; TAR DNA binding protein, like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 120478626 dhx40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 120477138 kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 120459804 mettl8; mRNA N(3)-methylcytidine methyltransferase METTL8 isoform X1 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 120489948 mettl22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 120484677 tent5ba; terminal nucleotidyltransferase 5ba K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 120462709 tent5aa; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 120463146 tent5ab; terminal nucleotidyltransferase 5Ab K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 120463760 terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 120463827 LOW QUALITY PROTEIN: terminal nucleotidyltransferase 5C-like K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 120460312 zc3h14; zinc finger CCCH domain-containing protein 14 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 120471639 srrt; serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 120488444 rbm8a; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 120483047 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 120472140 alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 120485165 ddx39b; DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 120492129 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 120491493 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 120489610 casc3; protein CASC3 isoform X1 K14323 CASC3; protein CASC3
E 120467100 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 120479973 pnn; pinin K13114 PNN; pinin
E 120465051 acin1a; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 120462579 acin1b; apoptotic chromatin condensation inducer 1b K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 120463213 rnps1; RNA-binding protein with serine-rich domain 1 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 120495410 srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 120468745 thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 120494792 thoc2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 120464909 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 120472140 alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 120472245 thoc5; THO complex subunit 5 homolog isoform X1 K13174 THOC5; THO complex subunit 5
E 120489776 thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 120480289 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 120459076 pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 120485457 sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 120462133 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 120464280 cetn2; centrin-1 isoform X1 K10840 CETN2; centrin-2
E 120483154 cetn3; centrin-3 K16466 CETN3; centrin-3
E 120461496 germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 120482296 tpra; nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 120493378 tprb; LOW QUALITY PROTEIN: translocated promoter region b, nuclear basket protein K09291 TPR; nucleoprotein TPR
E 120466807 mRNA export factor-like K14298 RAE1; mRNA export factor
E 120466949 mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 120495403 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 120477038 nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 120481505 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 120474109 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 120462170 nuclear pore complex protein Nup50-like K14295 NUP50; nuclear pore complex protein Nup50
E 120462171 nuclear pore complex protein Nup50-like K14295 NUP50; nuclear pore complex protein Nup50
E 120481937 nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 120494846 nup62l; nucleoporin 62 like isoform X1 K14306 NUP62; nuclear pore complex protein Nup62
E 120472078 nup88; nucleoporin 88 K14318 NUP88; nuclear pore complex protein Nup88
E 120493888 nup93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 120494499 nup98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 120476930 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 120488719 nup133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 120471248 nup188; LOW QUALITY PROTEIN: nucleoporin NUP188 K14311 NUP188; nuclear pore complex protein Nup188
E 120485128 nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 120482629 nup155; nuclear pore complex protein Nup155 isoform X1 K14312 NUP155; nuclear pore complex protein Nup155
E 120468071 nup160; nuclear pore complex protein Nup160 isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 120487308 nup35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 120462010 nup205; LOW QUALITY PROTEIN: nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 120491803 nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 120471945 nup214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 120482143 pom121; nuclear envelope pore membrane protein POM 121 isoform X1 K14316 POM121; nuclear pore complex protein Nup121
E 120488209 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 120475270 nucleoporin NUP42-like K14321 NUPL2; nucleoporin-like protein 2
E 120475281 nucleoporin NUP42-like isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 120482309 ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 120485347 seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 120495129 nucleoporin SEH1-like K14299 SEH1; nucleoporin SEH1
E 120480580 E3 SUMO-protein ligase RanBP2-like isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 120480581 ranbp2; E3 SUMO-protein ligase RanBP2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 120491526 senp2; sentrin-specific protease 2 isoform X1 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 120475126 aaas; aladin K14320 AAAS; aladin
E 120483154 cetn3; centrin-3 K16466 CETN3; centrin-3
E 120489889 nucleoporin GLE1-like K18723 GLE1; nucleoporin GLE1
E 120460699 nxf1a; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 120494664 nxf1b; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 120460848 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 120460969 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 120490986 acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 120491015 acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 120495067 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 120471874 tnfsf13; tumor necrosis factor ligand superfamily member 13 isoform X1 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 120481466 elavl1b; ELAV-like protein 1b isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 120465085 elavl1a; ELAV-like protein 1a isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 120481693 elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 120468772 elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 120480125 ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 120489263 elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 120482663 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 120477415 zgc:136908 K13525 VCP; transitional endoplasmic reticulum ATPase
E 120461737 transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 120471194 transitional endoplasmic reticulum ATPase-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 120464122 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 120489753 tnpo2; transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 120488603 transportin-2 K18727 TNPO2; transportin-2
E 120466150 xpo1b; exportin-1 K14290 XPO1; exportin-1
E 120488862 xpo1a; exportin-1 K14290 XPO1; exportin-1
E 120481657 xpo7; exportin-7 K18460 XPO7; exportin-7
E 120464010 rangap1b; ran GTPase-activating protein 1b K14319 RANGAP1; Ran GTPase-activating protein 1
E 120490145 rangap1a; ran GTPase-activating protein 1a K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 120460828 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 120479305 eif4e1c; eukaryotic translation initiation factor 4E family member 1c isoform X1 K03259 EIF4E; translation initiation factor 4E
E 120471749 eif4e1b; eukaryotic translation initiation factor 4E-1B K03259 EIF4E; translation initiation factor 4E
E 120479549 eif4eb; eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 120463317 eif4e2rs1; eukaryotic translation initiation factor 4E family member 2 related sequence 1 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 120495304 eif4e2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 120467867 eif4a1a; eukaryotic translation initiation factor 4A1A isoform X1 K03257 EIF4A; translation initiation factor 4A
E 120470227 eif4a1b; eukaryotic translation initiation factor 4A1B K03257 EIF4A; translation initiation factor 4A
E 120471451 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 120481946 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X1 K03260 EIF4G; translation initiation factor 4G
E 120492666 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 120493617 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b isoform X1 K03260 EIF4G; translation initiation factor 4G
E 120470700 wu:fb16f03; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 120480237 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 120463167 eif4g3b; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 120491438 eif4bb; eukaryotic translation initiation factor 4Bb isoform X1 K03258 EIF4B; translation initiation factor 4B
E 120463161 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 120470551 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 120490804 eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 120479393 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 120460738 eif4ebp3l; eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 120494435 eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 120491635 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 120493559 angel2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 120462347 angel1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 120491792 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 120460748 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 120470052 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 120474377 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 120491712 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 120482546 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 120467736 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 120490644 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120490645 cytoplasmic polyadenylation element-binding protein 4-like K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120469162 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120477747 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120460918 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120479348 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120462706 cpeb2; cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120465200 ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 120463768 ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 120481827 gigyf1b; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 120482407 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 120469534 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 120491085 embryonic polyadenylate-binding protein-like K13126 PABPC; polyadenylate-binding protein
E 120459309 pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 120485196 pabpc1b; polyadenylate-binding protein 1b isoform X1 K13126 PABPC; polyadenylate-binding protein
E 120471095 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 120471102 pabpc1a; polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 120470234 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 120492086 paip2b; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 120477833 polyadenylate-binding protein-interacting protein 2B-like isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 120485295 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 120473358 deaf1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 120474423 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 120482347 denr; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 120474480 a1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 120475521 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 120459832 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 120462801 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 120473427 hnrnpa1a; heterogeneous nuclear ribonucleoprotein A1a isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 120481865 msi2a; RNA-binding protein Musashi homolog 2a isoform X1 K14411 MSI; RNA-binding protein Musashi
E 120490055 RNA-binding protein Musashi homolog 1-like isoform X1 K14411 MSI; RNA-binding protein Musashi
E 120476409 dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 120478996 msi2b; RNA-binding protein Musashi homolog 2b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 120473498 msi1b; RNA-binding protein Musashi homolog 1b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 120462900 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 120492933 pelo; protein pelota homolog K06965 PELO; protein pelota
E 120475912 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 120492611 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 120463701 zgc:193690; ATP-dependent RNA helicase DDX19A isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 120473417 ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 120473419 ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 120489951 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 120473487 SAP domain-containing ribonucleoprotein isoform X1 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 120484706 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 120481951 larp6a; la-related protein 6a K18733 LARP6; la-related protein 6
E 120476395 larp6b; la-related protein 6b isoform X1 K18733 LARP6; la-related protein 6
E 120460967 purab; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 120494564 puraa; purine-rich element binding protein Aa K21772 PURA; transcriptional activator protein Pur-alpha
E 120482670 purbb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 120470040 purba; purine-rich element binding protein Ba K21799 PURB; transcriptional activator protein Pur-beta
E 120468243 polymerase delta-interacting protein 3-like isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 120468244 polymerase delta-interacting protein 3-like isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 120495209 zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 120484292 leng8; leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3
E 120492829 patl2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 120481605 etf1b; eukaryotic peptide chain release factor subunit 1b K03265 ETF1; peptide chain release factor subunit 1
E 120473237 etf1a; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 120489617 gspt1l; G1 to S phase transition 1, like K03267 ERF3; peptide chain release factor subunit 3
E 120488787 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 120474947 regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 120471062 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 120474415 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 120489808 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 120482124 ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 120461083 ppp2caa; protein phosphatase 2 catalytic subunit alpha a K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 120473669 ppp2cab; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 120478785 ppp2r1bb; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 120472054 ppp2r1ba; protein phosphatase 2, regulatory subunit A, beta a K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 120472068 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 120481342 ppp2r2aa; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 120481591 ppp2r2cb; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 120474755 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 120482699 ppp2r2ab; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 120461096 ppp2r2ba; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 120481203 ppp2r2ca; protein phosphatase 2, regulatory subunit B, gamma a K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 120482447 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 120490359 ppp2r3b; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 120480038 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 120480046 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 120492002 ppp2r5cb; protein phosphatase 2, regulatory subunit B', gamma b isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 120492328 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 120477696 ppp2r5ca; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 120470182 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 120493420 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 120493807 ppp2r5ea; protein phosphatase 2, regulatory subunit B', epsilon K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 120493831 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 120463122 ppp2r5eb; protein phosphatase 2, regulatory subunit B', epsilon K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 120490285 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 120488123 protein SMG5-like K11125 SMG5; protein SMG5
E 120488256 protein SMG5-like K11125 SMG5; protein SMG5
E 120482135 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 120465024 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 120482830 smg8; protein SMG8 K18734 SMG8; protein SMG8
E 120484397 smg9; protein SMG9 K18735 SMG9; protein SMG9
E 120481827 gigyf1b; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 120482407 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 120469534 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 120471977 selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 120487713 secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 120459941 dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 120489882 gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 120486828 gtpbp1l; GTP binding protein 1, like K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 120482956 pum3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 120475368 myo5ab; unconventional myosin-Va K10357 MYO5; myosin V
E 120477590 unconventional myosin-Vc-like K10357 MYO5; myosin V
E 120477764 myo5c; LOW QUALITY PROTEIN: unconventional myosin-Vc K10357 MYO5; myosin V
E 120485967 myo5aa; unconventional myosin-Va K10357 MYO5; myosin V
E 120494510 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 120495425 si:dkey-110c1.10; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 120481334 zgc:171572; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 120461470 protein bicaudal D homolog 2-like K18739 BICD; protein bicaudal D
E 120485984 zgc:162200; LOW QUALITY PROTEIN: protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 120462097 bicd1a; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 120470943 protein bicaudal D homolog 1-like isoform X1 K18739 BICD; protein bicaudal D
E 120480633 bicd2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 120462459 exd1; piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 120489986 actb2; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 120463340 actb1; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 120476305 myelin basic protein-like K17269 MBP; myelin basic protein
E 120483633 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 120483658 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 120481754 viml; vimentin like K07606 VIM; vimentin
E 120460144 vimentin-like isoform X1 K07606 VIM; vimentin
E 120488307 vim; vimentin isoform X1 K07606 VIM; vimentin
E 120473183 mtbl; metallothionein-B-like K14739 MT1_2; metallothionein 1/2
E 120481646 mycb; transcriptional regulator Myc-B K04377 MYC; Myc proto-oncogene protein
E 120476017 myca; transcriptional regulator Myc-A K04377 MYC; Myc proto-oncogene protein
E 120481329 tbx16; T-box transcription factor 16 isoform X1 K10180 TBX6; T-box protein 6
E 120469024 tbx6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 120461667 tbx16l; T-box transcription factor TBX6L K10180 TBX6; T-box protein 6
E 120477460 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 120477491 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 120480113 nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 120471374 fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 120471682 fubp3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 120488195 far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 120476014 si:dkey-37o8.1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 120468851 elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
E 120468866 eef1a1b; elongation factor 1-alpha 1b K03231 EEF1A; elongation factor 1-alpha
E 120469444 eef1a2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 120485211 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 120485212 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 120479511 eef1a1a; elongation factor 1-alpha 1a isoform X1 K03231 EEF1A; elongation factor 1-alpha
E 120460892 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 120483799 hax1; HCLS1-associated protein X-1 isoform X1 K16220 HAX1; HCLS1-associated protein X-1
E 120483069 agfg1b; arf-GAP domain and FG repeat-containing protein 1b isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 120477663 agfg1a; arf-GAP domain and FG repeat-containing protein 1a isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 120469759 agfg2; arf-GAP domain and FG repeat-containing protein 2 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 120476133 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 120459823 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 120483762 igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 120482230 ptbp1a; polypyrimidine tract-binding protein 1a K13218 PTBP1; polypyrimidine tract-binding protein 1
E 120466895 ptbp1b; polypyrimidine tract-binding protein 1b isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 120490644 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120490645 cytoplasmic polyadenylation element-binding protein 4-like K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120469162 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120477747 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120460918 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120479348 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120462706 cpeb2; cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 120491792 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 120460748 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 120470052 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 120474377 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 120491712 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 120475117 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 120475119 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 120467009 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 120477163 pcbp4; poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 120477613 pcbp3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 120479731 zgc:110045; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 120468025 caprin1a; caprin-1a isoform X1 K18743 CAPRIN1; caprin-1
E 120487688 caprin1b; caprin-1b K18743 CAPRIN1; caprin-1
E 120476534 caprin2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 120486889 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 120482478 xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 120491142 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 120491143 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 120491148 protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 120483505 ago3b; protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 120477068 protein argonaute-4-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 120485027 protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 120485028 protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 120492889 ago4; protein argonaute-4 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 120460828 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 120479305 eif4e1c; eukaryotic translation initiation factor 4E family member 1c isoform X1 K03259 EIF4E; translation initiation factor 4E
E 120471749 eif4e1b; eukaryotic translation initiation factor 4E-1B K03259 EIF4E; translation initiation factor 4E
E 120479549 eif4eb; eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 120463317 eif4e2rs1; eukaryotic translation initiation factor 4E family member 2 related sequence 1 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 120495304 eif4e2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 120474947 regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 120465200 ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 120463768 ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 120483518 probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 120459947 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 120484538 ddx61; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 120481434 mex3a; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 120470393 mex3b; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 120471351 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 120482099 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 120468186 lsm14aa; LSM14A mRNA processing body assembly factor a isoform X1 K18749 LSM14; protein LSM14
E 120486345 protein LSM14 homolog B-like isoform X1 K18749 LSM14; protein LSM14
E 120486417 protein LSM14 homolog B-like isoform X1 K18749 LSM14; protein LSM14
E 120487686 lsm14ab; LSM14A mRNA processing body assembly factor b isoform X1 K18749 LSM14; protein LSM14
E 120475117 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 120475119 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 120486889 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 120462572 ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 120462646 LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 120487779 Wilms tumor protein 1-interacting protein homolog K16682 AJUBA; LIM domain-containing protein
E 120483993 mov10b.2; putative helicase mov-10-B.2 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 120484020 mov10b.1; LOW QUALITY PROTEIN: putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 120493863 mov10a; putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 120484451 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 120461850 tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 120490285 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 120488123 protein SMG5-like K11125 SMG5; protein SMG5
E 120488256 protein SMG5-like K11125 SMG5; protein SMG5
E 120482135 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 120465024 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 120464048 mRNA decay activator protein ZFP36L2-like isoform X1 K18753 ZFP36L; butyrate response factor
E 120476394 zfp36l1a; mRNA decay activator protein ZFP36L1a K18753 ZFP36L; butyrate response factor
E 120460019 mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 120493474 zfp36l1b; mRNA decay activator protein ZFP36L1b K18753 ZFP36L; butyrate response factor
E 120478977 zgc:114130; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 120471539 zfp36l2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 120460336 lin28b; protein lin-28 homolog B isoform X1 K18754 LIN28; protein lin-28
E 120462637 lin28aa; protein lin-28 homolog A isoform X1 K18754 LIN28; protein lin-28
E 120463155 lin28ab; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 120492122 htt; huntingtin isoform X1 K04533 HD; huntingtin
E 120476572 ipo8; importin-8 isoform X1 K18755 IPO8; importin-8
E 120464017 protein bicaudal C homolog 1-like K18756 BICC1; protein bicaudal C
E 120478378 bicc1a; protein bicaudal C homolog 1-B isoform X1 K18756 BICC1; protein bicaudal C
E 120473326 bicc2; bicaudal C homolog 2 isoform X1 K18756 BICC1; protein bicaudal C
E 120459832 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 120462801 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 120473427 hnrnpa1a; heterogeneous nuclear ribonucleoprotein A1a isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 120464256 prkacba; protein kinase, cAMP-dependent, catalytic, beta a K04345 PKA; protein kinase A [EC:2.7.11.11]
E 120491168 cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 120460052 prkacab; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 120461561 prkacbb; protein kinase, cAMP-dependent, catalytic, beta b isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 120487628 larp1b; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 120473602 larp1; la-related protein 1 K18757 LARP1; la-related protein 1
E 120489628 ataxin-2-like isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 120490262 atxn2l; ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 120489177 ataxin-2-like isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 120482216 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 120481335 dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 120476945 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 120474870 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 120493068 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 120479947 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 120476364 lsm4; U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 120492937 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 120484962 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 120461337 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 120486246 lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 120476682 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 120468662 klc4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain
E 120460671 klc1b; kinesin light chain 1b isoform X1 K10407 KLC; kinesin light chain
E 120469912 kinesin light chain 2-like K10407 KLC; kinesin light chain
E 120469913 kinesin light chain 2-like K10407 KLC; kinesin light chain
E 120478703 klc3; kinesin light chain 3 isoform X1 K10407 KLC; kinesin light chain
E 120479762 klc1a; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 120475368 myo5ab; unconventional myosin-Va K10357 MYO5; myosin V
E 120477590 unconventional myosin-Vc-like K10357 MYO5; myosin V
E 120477764 myo5c; LOW QUALITY PROTEIN: unconventional myosin-Vc K10357 MYO5; myosin V
E 120485967 myo5aa; unconventional myosin-Va K10357 MYO5; myosin V
E 120494510 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 120495425 si:dkey-110c1.10; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 120482207 tuba7l; LOW QUALITY PROTEIN: tubulin, alpha 7 like K07374 TUBA; tubulin alpha
E 120491473 tubulin alpha chain isoform X1 K07374 TUBA; tubulin alpha
E 120491474 tubulin alpha-1D chain-like K07374 TUBA; tubulin alpha
E 120484196 tuba5; tubulin alpha 5 K07374 TUBA; tubulin alpha
E 120492330 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 120492333 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 120487186 tuba8l3; tubulin, alpha 8 like 3 K07374 TUBA; tubulin alpha
E 120487337 tubulin alpha-1D chain-like K07374 TUBA; tubulin alpha
E 120463358 tubulin alpha-1A chain-like isoform X1 K07374 TUBA; tubulin alpha
E 120463360 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 120473463 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 120473464 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 120490644 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120490645 cytoplasmic polyadenylation element-binding protein 4-like K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120469162 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120477747 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120460918 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120479348 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120462706 cpeb2; cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 120482546 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 120467736 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 120490029 trinucleotide repeat-containing gene 6A protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 120490169 trinucleotide repeat-containing gene 6B protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 120493017 tnrc6c2; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 120461876 tnrc6c1; trinucleotide repeat-containing gene 6C protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 120488693 tnrc6b; LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 120489094 LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6B protein-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 120459054 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 120469175 cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 120484467 cnot3a; CCR4-NOT transcription complex subunit 3a isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 120463178 cnot3b; CCR4-NOT transcription complex subunit 3b isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 120476839 cnot4b; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 120469108 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 120461072 cnot6b; CCR4-NOT transcription complex, subunit 6b K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 120470068 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 120494541 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 120474985 cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 120483028 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 120487652 granule associated Rac and RHOG effector protein 1-like K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 120461378 dis3l2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 120462832 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 120476080 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 120464370 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 120490192 protein Tob2 K14443 TOB; protein Tob/BTG
E 120482611 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 120477057 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 120484562 si:dkey-79d12.5; maternal B9.15 protein isoform X1 K14443 TOB; protein Tob/BTG
E 120492804 si:dkey-42i9.4; protein BTG1 K14443 TOB; protein Tob/BTG
E 120469953 protein Tob1-like K14443 TOB; protein Tob/BTG
E 120486454 btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 120472273 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 120473383 protein BTG1-like K14443 TOB; protein Tob/BTG
E 120491635 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 120489012 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 120469222 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 120487695 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 120460560 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 120471062 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 120474415 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 120489808 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 120495071 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 120460602 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 120482954 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 120493833 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 120469178 ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 120480430 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 120488341 ythdf3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 120470051 tia1l; cytotoxic granule-associated RNA binding protein 1, like K13201 TIA1; nucleolysin TIA-1/TIAR
E 120479449 tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 120472046 tia1; nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 120491085 embryonic polyadenylate-binding protein-like K13126 PABPC; polyadenylate-binding protein
E 120459309 pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 120485196 pabpc1b; polyadenylate-binding protein 1b isoform X1 K13126 PABPC; polyadenylate-binding protein
E 120471095 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 120471102 pabpc1a; polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 120476133 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 120459823 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 120491792 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 120460748 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 120470052 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 120481466 elavl1b; ELAV-like protein 1b isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 120465085 elavl1a; ELAV-like protein 1a isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 120484933 g3bp1; ras GTPase-activating protein-binding protein 1 isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 120495029 g3bp2a; ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 120463312 g3bp2b; ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 120473725 eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 120489357 eif3ba; eukaryotic translation initiation factor 3, subunit Ba K03253 EIF3B; translation initiation factor 3 subunit B
E 120467867 eif4a1a; eukaryotic translation initiation factor 4A1A isoform X1 K03257 EIF4A; translation initiation factor 4A
E 120470227 eif4a1b; eukaryotic translation initiation factor 4A1B K03257 EIF4A; translation initiation factor 4A
E 120471451 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 120492129 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 120491438 eif4bb; eukaryotic translation initiation factor 4Bb isoform X1 K03258 EIF4B; translation initiation factor 4B
E 120463161 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 120481946 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X1 K03260 EIF4G; translation initiation factor 4G
E 120492666 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 120493617 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b isoform X1 K03260 EIF4G; translation initiation factor 4G
E 120470700 wu:fb16f03; eukaryotic translation initiation factor 4 gamma 1 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 120480237 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 120463167 eif4g3b; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 120470374 rps6ka3a; ribosomal protein S6 kinase alpha-1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 120486113 rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 120494820 rps6kal; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 120463322 rps6ka2; ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 120488338 rps6ka3b; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 120460736 rack1; guanine nucleotide-binding protein subunit beta-2-like 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 120471246 guanine nucleotide-binding protein subunit beta-2-like 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 120490283 TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 120469445 traf2a; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 120471951 traf2b; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 120460699 nxf1a; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 120494664 nxf1b; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 120474946 hdac6; histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 120480515 tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 120491377 larp4ab; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 120463013 la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 120488198 larp4b; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 120481335 dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 120476945 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 120482216 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 120483518 probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 120459947 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 120484538 ddx61; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 120469222 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 120487695 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 120489012 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 120474870 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 120493068 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 120479947 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 120476364 lsm4; U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 120492937 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 120484962 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 120461337 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 120486246 lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 120476682 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 120482478 xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 120480919 xrn2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 120462816 zgc:103759; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 120482632 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 120488966 helz; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 120488324 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 120472390 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 120460606 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 120461692 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 120487571 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 120473151 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 120483430 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 120482151 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 120493345 exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 120468835 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 120491059 dis3l; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 120488334 exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 120480723 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 120468189 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 120468774 tent4b; terminal nucleotidyltransferase 4B isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 120485326 tent4a; terminal nucleotidyltransferase 4A K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 120495107 terminal nucleotidyltransferase 4A-like isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 120493964 zcchc7; zinc finger CCHC domain-containing protein 7 isoform X1 K12597 AIR1_2; protein AIR1/2
E 120481680 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 120485295 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 120472230 tetratricopeptide repeat protein 37-like K12600 SKI3; superkiller protein 3
E 120477801 wdr61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 120461072 cnot6b; CCR4-NOT transcription complex, subunit 6b K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 120470068 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 120494541 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 120459054 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 120469175 cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 120484467 cnot3a; CCR4-NOT transcription complex subunit 3a isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 120463178 cnot3b; CCR4-NOT transcription complex subunit 3b isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 120476839 cnot4b; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 120469108 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 120474985 cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 120483028 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 120486816 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 120495104 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 120462832 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 120476080 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 120466918 parn; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 120486020 dhx36; ATP-dependent DNA/RNA helicase DHX36 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 120464370 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 120490192 protein Tob2 K14443 TOB; protein Tob/BTG
E 120482611 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 120477057 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 120484562 si:dkey-79d12.5; maternal B9.15 protein isoform X1 K14443 TOB; protein Tob/BTG
E 120492804 si:dkey-42i9.4; protein BTG1 K14443 TOB; protein Tob/BTG
E 120469953 protein Tob1-like K14443 TOB; protein Tob/BTG
E 120486454 btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 120472273 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 120473383 protein BTG1-like K14443 TOB; protein Tob/BTG
E 120481331 noctb; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 120460783 nocta; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 120490709 eri1; 3'-5' exoribonuclease 1 isoform X1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 120466919 eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 120482632 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 120480478 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 120477861 ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 120488966 helz; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 120464527 helz2a; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 120464936 LOW QUALITY PROTEIN: helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 120464937 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 120470194 helz2c; helicase with zinc finger domain 2 isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 120487778 nrde2; nuclear exosome regulator NRDE2 isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 120479599 samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 120488286 protein Smaug homolog 2 K27396 SMG; protein Smaug
E 120469459 focad; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 120483694 si:dkey-206d17.12; ribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 120470445 zc3h12b; probable ribonuclease ZC3H12B isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 120462664 endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 120492950 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 120481773 smfn; small fragment nuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 120491495 eno1b; enolase 1b, (alpha) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 120484087 eno3; beta-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 120485625 eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 120463680 eno1a; enolase 1a, (alpha) isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 120484218 polyribonucleotide nucleotidyltransferase 1, mitochondrial-like K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 120484233 polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 120475803 pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 120483116 pfkpb; ATP-dependent 6-phosphofructokinase, platelet type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 120491374 pfkmb; phosphofructokinase, muscle b isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 120491957 pfklb; phosphofructokinase, liver b K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 120486984 pfkla; LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 120462774 pfkma; phosphofructokinase, muscle a K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 120494839 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 120467267 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 120472390 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 120488324 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 120461692 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 120483430 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024