+D Transcription factors KO #

  Transcription Factors - Ectopseudomonas oleovorans

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D BN5_0914 sinIM; Modification methylase SinI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D BN5_1740 dcmB; DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D BN5_1977 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D BN5_1926 putative araC-like transcription regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D BN5_4014 putative HTH-type transcriptional regulator ydeE K13652 K13652; AraC family transcriptional regulator D BN5_1218 HTH-type transcriptional activator rhaS K07506 K07506; AraC family transcriptional regulator D BN5_0712 DNA-O6-methylguanine-protein-cysteine S-methyltransferase / transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BN5_1489 argR; AraC family transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator D BN5_0379 gbdR; transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D BN5_2101 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator C LysR family D BN5_0138 gcvA1; DNA-binding transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN5_0174 ampR; LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN5_1285 gcvA3; HTH-type transcriptional activator ampR K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BN5_3627 pcaQ; transcriptional regulator PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D BN5_2695 metR; HTH-type transcriptional regulator metR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D BN5_4225 oxyR3; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D BN5_3327 chromosome replication initiation inhibitor protein K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D BN5_2148 cysB; putative transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D BN5_3306 LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D BN5_2054 mexT1; LysR family transcriptional regulator K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator D BN5_0078 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D BN5_0841 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D BN5_4311 HTH-type transcriptional activator cmpR K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator D BN5_0048 trpI; LysR family transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator C DeoR family D BN5_1114 glpR; putative HTH-type transcriptional regulator ygbI K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D BN5_0682 fruR; DNA-binding transcriptional regulator FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D BN5_2168 gntR7; HTH-type transcriptional repressor purR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D BN5_1513 phnF; PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BN5_3900 hutC; Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BN5_0901 pdhR; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BN5_0129 glcC; DNA-binding transcriptional regulator GlcC K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator D BN5_0082 gntR1; transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D BN5_0586 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D BN5_0373 betI; Tetracycline transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D BN5_0816 ttgR3; TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D BN5_0327 rutR; HTH-type transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D BN5_0840 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D BN5_2598 tetR9; HTH-type transcriptional regulator rutR K09017 rutR; TetR/AcrR family transcriptional regulator D BN5_2292 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BN5_3337 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BN5_3409 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BN5_4466 HTH-type transcriptional repressor dhaR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BN5_1109 putative HTH-type transcriptional regulator ydeS K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D BN5_0705 ttgR1; TetR family transcriptional regulator K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D BN5_1330 nfxB; HTH-type transcriptional regulator nfxB K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D BN5_0555 tetR3; TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D BN5_2432 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator C Lrp/AsnC family D BN5_0163 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN5_0787 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN5_1024 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BN5_2690 lrp; Leucine-responsive regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D BN5_4145 ybaO; Leucine-responsive regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D BN5_0880 regulatory protein, LuxR K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D BN5_2493 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D BN5_2295 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D BN5_2535 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D BN5_3802 merR3; Mercury regulatory protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D BN5_4473 merR5; Mercuric resistance operon regulatory protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D BN5_4478 merD; RecName: FullMercuric resistance operon regulatory protein K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D BN5_0701 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D BN5_1174 putative HTH-type transcriptional regulator ycgE K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D BN5_3351 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D BN5_0907 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BN5_2253 Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BN5_4320 zur; Zinc uptake regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D BN5_3602 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor C CRP/FNR family D BN5_3742 crp; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BN5_4194 fnr; Transcriptional activator protein anr K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BN5_2456 anr; CRP/FNR family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D BN5_3269 iscR; HTH-type transcriptional regulator iscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D BN5_1989 arsR5; putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BN5_2707 arsR7; Protein arsC K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] D BN5_0252 arsR1; ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family C Other families D BN5_1299 hexR; HTH-type transcriptional regulator hexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D BN5_4316 Bifunctional protein glk K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D BN5_3717 birA; biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BN5_0600 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BN5_3880 Ner-like protein K07724 ner; Ner family transcriptional regulator D BN5_2665 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D BN5_3222 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D BN5_3376 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D BN5_3383 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D BN5_2657 ntrC1; Nitrogen regulation protein NR(I) K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D BN5_1723 Fis family GAF modulated sigma54 specific K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D BN5_0991 norR; Anaerobic nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D BN5_0438 cynF; Fis family transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator D BN5_2935 cdaR; carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator D BN5_3920 modE; ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D BN5_3561 transcriptional regulator K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D BN5_3329 putA; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D BN5_0011 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D BN5_1527 bolA; BolA-like protein 1 K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D BN5_3554 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BN5_4505 parB; putative chromosome-partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BN5_1309 tyrR1; transcriptional regulator, TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D BN5_3014 tyrR3; putative PAS/PAC sensor protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D BN5_2719 psfF; Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D BN5_0193 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D BN5_2068 Transcription elongation factor greA K06140 rnk; regulator of nucleoside diphosphate kinase D BN5_0304 pyrR; uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D BN5_1987 alpA; Phage transcriptional regulator, AlpA [ K07733 alpA; prophage regulatory protein D BN5_1999 Uncharacterized protein ORF88 K07733 alpA; prophage regulatory protein D BN5_3165 Prophage CP4-57 regulatory, AlpA-like pr K07733 alpA; prophage regulatory protein D BN5_0083 paiB; FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D BN5_0306 hypothetical protein K07735 algH; putative transcriptional regulator D BN5_0951 dksA1; TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor D BN5_4350 dksA3; DnaK suppressor protein homolog K06204 dksA; RNA polymerase-binding transcription factor D BN5_3647 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D BN5_3471 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0