+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudomonas versuta

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AOC04_00590 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AOC04_16295 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E AOC04_14925 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AOC04_23105 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E AOC04_19085 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AOC04_01820 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E AOC04_08380 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AOC04_02935 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AOC04_01630 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AOC04_20660 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AOC04_00590 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AOC04_16295 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D AOC04_08940 deoxyribodipyrimidine photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D AOC04_09130 alpha-ketoglutarate-dependent dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E AOC04_14925 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AOC04_00585 DNA methylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E AOC04_23105 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E AOC04_19085 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AOC04_20280 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E AOC04_21460 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E AOC04_01820 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AOC04_20680 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AOC04_13495 exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E AOC04_15380 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AOC04_05000 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E AOC04_21825 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E AOC04_20930 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E AOC04_22805 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E AOC04_10485 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E AOC04_20015 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AOC04_20930 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E AOC04_05000 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E AOC04_21825 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AOC04_22625 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AOC04_22630 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AOC04_22785 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F AOC04_20705 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AOC04_03800 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AOC04_02145 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E AOC04_18105 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E AOC04_02875 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E AOC04_01510 exodeoxyribonuclease K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AOC04_22945 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E AOC04_15080 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AOC04_20235 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AOC04_15595 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E AOC04_23185 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AOC04_03165 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AOC04_00140 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AOC04_22145 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AOC04_13635 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AOC04_05005 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AOC04_05000 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E AOC04_21825 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AOC04_20015 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AOC04_22815 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E AOC04_11430 restriction endonuclease subunit M K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AOC04_17325 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E AOC04_17330 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E AOC04_17320 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E AOC04_02165 recombinase RecA K03553 recA; recombination protein RecA E AOC04_13920 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AOC04_13915 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AOC04_13925 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E AOC04_18700 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E AOC04_02875 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E AOC04_07120 chromosome segregation protein SMC K03546 sbcC; DNA repair protein SbcC/Rad50 E AOC04_07125 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E AOC04_02165 recombinase RecA K03553 recA; recombination protein RecA E AOC04_00290 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E AOC04_20240 recombinase RecF K03629 recF; DNA replication and repair protein RecF E AOC04_20750 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AOC04_15380 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AOC04_15555 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AOC04_05015 recR; recombination protein RecR K06187 recR; recombination protein RecR E AOC04_16865 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E AOC04_02770 recombinase RdgC K03554 rdgC; recombination associated protein RdgC E AOC04_13920 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AOC04_13915 ruvB; ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AOC04_13925 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E AOC04_07120 chromosome segregation protein SMC K03546 sbcC; DNA repair protein SbcC/Rad50 E AOC04_07125 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E AOC04_11970 DNA repair protein K10979 ku; DNA end-binding protein Ku E AOC04_12150 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AOC04_04825 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AOC04_20245 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AOC04_08735 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F AOC04_03760 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AOC04_20765 integration host factor K05787 hupA; DNA-binding protein HU-alpha F AOC04_15615 dipicolinate synthase K03530 hupB; DNA-binding protein HU-beta F AOC04_13705 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AOC04_15380 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AOC04_15555 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AOC04_05015 recR; recombination protein RecR K06187 recR; recombination protein RecR F AOC04_05000 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F AOC04_21825 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F AOC04_17690 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F AOC04_11660 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F AOC04_04860 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F AOC04_02875 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F AOC04_12920 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AOC04_18870 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AOC04_22805 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F AOC04_10485 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AOC04_02265 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AOC04_09710 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D AOC04_07560 peptidase S24 K03503 umuD; DNA polymerase V [EC:3.4.21.-] D AOC04_09715 peptidase S24 K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D AOC04_02165 recombinase RecA K03553 recA; recombination protein RecA D AOC04_03780 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D AOC04_16865 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D AOC04_10690 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D AOC04_22815 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D AOC04_02170 recombinase RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AOC04_20550 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D AOC04_01930 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D AOC04_02935 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AOC04_01630 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AOC04_20660 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AOC04_14135 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AOC04_14530 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024