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Transfer RNA Biogenesis - Pseudomonas putida KT2440
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D PP_4033 rnz; Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D PP_0394 cca; tRNA nucleotidyltransferase - 2',3'-cyclic phosphodiesterase - 2' nucleotidase and phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PP_1977 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PP_1205 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PP_0603 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PP_4794 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PP_1097 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PP_2904 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PP_5089 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PP_1496 lysS; Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PP_1213 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D PP_4474 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PP_2465 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PP_4000 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PP_2905 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PP_0977 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PP_0854 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PP_2469 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PP_2470 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PP_0436 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PP_1311 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D PP_5027 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D PP_0428 hinT; aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D PP_5103 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PP_1189 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PP_1994 truA; tRNA pseudouridine (38-40)synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PP_4710 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PP_1619 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D PP_0842 iscS-I; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PP_2435 iscS-II; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D PP_0070 tsaC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PP_4895 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PP_0005 trmE; GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PP_0004 trmF; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PP_0823 selD; Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D PP_0261 cysQ; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D PP_0008 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D PP_mr18 RNaseP_bact_a ncRNA K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D PP_4033 rnz; Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D PP_1085 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D PP_5294 rph; Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D PP_4591 rnd; Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
C CCA adding factors
D PP_0394 cca; tRNA nucleotidyltransferase - 2',3'-cyclic phosphodiesterase - 2' nucleotidase and phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D PP_2424 putative 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
D PP_0674 ettA; ADP/ATP ratio sensor and inhibitor of translation K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PP_4794 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PP_1205 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D PP_0436 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PP_1311 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PP_2465 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PP_0603 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PP_1496 lysS; Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PP_4474 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PP_0977 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PP_1097 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PP_4000 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PP_1213 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PP_0061 glyQ; glycine-tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PP_0060 glyS; glycine-tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PP_2905 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PP_1977 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PP_2904 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PP_5089 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PP_2469 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PP_2470 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PP_0854 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PP_4694 gluQ; Glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D PP_5027 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D PP_1077 ybaK; Cys-tRNAPro deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D PP_0201 conserved protein of unknown function K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
D PP_2169 dusA; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D PP_4820 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D PP_1981 dusC; tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
C Methylthiotransferases
C Methyltransferases
D PP_1441 cmoA; tRNA (cmo5U34)-methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D PP_1440 cmoB; tRNA (mo5U34)-methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D PP_0578 putative Methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D PP_4654 trmA; tRNA/tmRNA (uracil-C(5))-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D PP_5103 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PP_1464 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PP_0005 trmE; GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PP_0839 trmJ; tRNA Cm32/Um32 methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D PP_3495 trmK; tRNA (adenine(22)-N(1))-methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D PP_5052 trmL; tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D PP_1189 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PP_1994 truA; tRNA pseudouridine (38-40)synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PP_4710 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PP_1619 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PP_1731 rluA; 23S rRNA (746) and tRNA (32) pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PP_2110 putative ribosomal large subunit pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D PP_4014 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PP_1641 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D PP_2116 tusA-II; sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PP_3995 conserved protein of unknown function K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D PP_3994 putative tRNA 5-methylaminomethyl-2-thiouridine synthase (tusC-like) K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D PP_3993 tusD; sulfur transfer protein complex, TusD subunit K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D PP_3996 tusE; sulfur transfer protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D PP_0844 iscA; iron-sulfur cluster assembly protein, copper(I) binding K13628 iscA; iron-sulfur cluster assembly protein
D PP_0842 iscS-I; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PP_2435 iscS-II; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PP_1423 conserved protein of unknown function K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D PP_0004 trmF; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PP_4895 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PP_2188 putative tRNA-(Ms(2)io(6)a)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D PP_1751 mnmC; methyltransferase/FAD-dependent oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D PP_0832 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D PP_1226 queC; pre-queuosine 0 synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PP_2341 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PP_1225 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PP_2160 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PP_4900 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D PP_0823 selD; Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D PP_0822 selU; tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D PP_0833 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PP_5045 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PP_1608 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PP_1507 tsaB; endopeptidase K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PP_0070 tsaC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PP_0390 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PP_4898 tsaE; ATPase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PP_1527 tcdA; tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C PP_4880 rnr; exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C PP_4708 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024