+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Plasmodium reichenowi

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors E PRSY57_1013800 MO15-related protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E PRSY57_1413900 RNA guanylyltransferase K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] D Cap binding complex E PRSY57_0413000 nuclear cap-binding protein, putative K12883 NCBP2; nuclear cap-binding protein subunit 2 C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) E PRSY57_0107000 mRNA cleavage factor-like protein, putative K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 D Pre-mRNA cleavage factor IIm (CFIIm) E PRSY57_0820900 clp1-related protein, putative K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] D Cleavage and polyadenylation specificity factor (CPSF) complex E PRSY57_1437800 cleavage and polyadenylation specificity factor, putative K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E PRSY57_1243200 microtubule associated katanin, putative K14962 WDR82; COMPASS component SWD2 E PRSY57_1413700 serine/threonine protein phosphatase PP1, putative K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] D Cleavage stimulation factor (CSTF) complex E PRSY57_0618900 cleavage stimulation factor subunit 1, putative K14406 CSTF1; cleavage stimulation factor subunit 1 D U7-dependent histone pre-mRNA processing factors E PRSY57_1414100 small nuclear ribonucleoprotein-associated protein B, putative K11086 SNRPB; small nuclear ribonucleoprotein B and B' E PRSY57_1349200 small nuclear ribonucleoprotein E, putative K11097 SNRPE; small nuclear ribonucleoprotein E E PRSY57_1125400 small nuclear ribonucleoprotein F, putative K11098 SNRPF; small nuclear ribonucleoprotein F E PRSY57_0821600 small nuclear ribonucleoprotein G, putative K11099 SNRPG; small nuclear ribonucleoprotein G E PRSY57_1437800 cleavage and polyadenylation specificity factor, putative K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E PRSY57_0518100 hypothetical protein K18710 SLBP; histone RNA hairpin-binding protein D DRB sensitivity inducing factor (DSIF) complex E PRSY57_1029300 transcription elongation factor SPT4, putative K15171 SUPT4H1; transcription elongation factor SPT4 E PRSY57_0609600 transcription elongation factor SPT5, putative K15172 SUPT5H; transcription elongation factor SPT5 D N6-methyltransferase complex E PRSY57_0726300 mRNA (N6-adenosine)-methyltransferase, putative K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] E PRSY57_1234700 mRNA methyltransferase, putative K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit E PRSY57_1230100 hypothetical protein K22824 WTAP; pre-mRNA-splicing regulator WTAP D Poly(A) addition factors E PRSY57_0624000 poly(A) polymerase PAP, putative K14376 PAP; poly(A) polymerase [EC:2.7.7.19] D Negative regulators of mRNA 3' end processing C Other processing factors D PRSY57_1466700 DNA/RNA-binding protein KIN17, putative K13102 KIN; DNA/RNA-binding protein KIN17 D PRSY57_0621500 coronin binding protein, putative K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 B mRNA surveillance and transport factors C Transport factors D EJC complex E PRSY57_1405300 RNA-binding protein, putative K12876 RBM8A; RNA-binding protein 8A E PRSY57_0722400 mago nashi protein-like protein K12877 MAGOH; protein mago nashi E PRSY57_0614400 RNA and export factor binding protein, putative K12881 THOC4; THO complex subunit 4 E PRSY57_0002500 ATP-dependent RNA helicase UAP56 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] E PRSY57_0419900 eukaryotic initiation factor, putative K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] D TREX complex E PRSY57_0614400 RNA and export factor binding protein, putative K12881 THOC4; THO complex subunit 4 D TREX-2 complex E PRSY57_0719000 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1 D Nuclear pore complex E PRSY57_1230000 protein transport protein SEC13, putative K14004 SEC13; protein transport protein SEC13 D Ran-mediated transport factors E PRSY57_1116100 GTP-binding nuclear protein RAN/TC4, putative K07936 RAN; GTP-binding nuclear protein Ran E PRSY57_1427200 conserved protein, unknown function K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B E PRSY57_0932700 UBX domain, putative K18726 FAF2; FAS-associated factor 2 E PRSY57_0617800 cell division cycle protein 48-like protein K13525 VCP; transitional endoplasmic reticulum ATPase E PRSY57_0302200 exportin-1, putative K14290 XPO1; exportin-1 E PRSY57_0908200 Ran-binding protein, putative K18460 XPO7; exportin-7 D eIF4F and regulatory proteins E PRSY57_0314400 translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E PRSY57_1467900 helicase 45 K03257 EIF4A; translation initiation factor 4A E PRSY57_0809900 RNA helicase, putative K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E PRSY57_1030800 DEAD/DEAH box helicase, putative K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E PRSY57_1223600 polyadenylate-binding protein, putative K13126 PABPC; polyadenylate-binding protein E PRSY57_0813000 translation initiation factor SUI1, putative K24272 DENR; density-regulated protein D APOBEC1-ACF complex D Other transport factors E PRSY57_1208300 hypothetical protein K14294 WIBG; partner of Y14 and mago E PRSY57_0412000 RNA-binding protein, putative K14411 MSI; RNA-binding protein Musashi E PRSY57_0719300 PelOta protein-like protein K06965 PELO; protein pelota E PRSY57_0921900 RNA-binding protein, putative K14396 PABPN1; polyadenylate-binding protein 2 E PRSY57_1458300 ATP-dependent RNA helicase DBP5 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] E PRSY57_1235100 pre-mRNA-splicing factor SYF1, putative K12867 SYF1; pre-mRNA-splicing factor SYF1 E PRSY57_0910500 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein E PRSY57_0709700 regulator of chromosome condensation, putative K11493 RCC1; regulator of chromosome condensation C Surveillance factors D Surveillance complex E PRSY57_0211200 peptide chain release factor subunit 1, putative K03265 ETF1; peptide chain release factor subunit 1 E PRSY57_1121800 translation elongation factor EF-1, subunit alpha, putative K03267 ERF3; peptide chain release factor subunit 3 E PRSY57_1004900 putative regulator of nonsense transcripts K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E PRSY57_0923800 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2 D Protein phosphatase 2A E PRSY57_0923400 protein phosphatase-beta K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E PRSY57_1355300 phosphatase 2A regulatory subunit-related protein, putative K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' D Other surveillance factors E PRSY57_0309000 SECIS-binding protein 2, putative K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 C Factors involved in mRNA localization D Cargo complex E PRSY57_0619700 mRNA binding PUM-HD domain protein-like protein K14844 PUF6; pumilio homology domain family member 6 E PRSY57_0203900 3'-5' exonuclease, putative K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 D Factors that have mRNA localization signals D Trans-acting binding proteins E PRSY57_1337300 elongation factor 1-gamma, putative K03233 EEF1G; elongation factor 1-gamma D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule E PRSY57_1104800 exonuclease, putative K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] E PRSY57_0314400 translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E E PRSY57_1004900 putative regulator of nonsense transcripts K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] E PRSY57_0809900 RNA helicase, putative K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E PRSY57_1030800 DEAD/DEAH box helicase, putative K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E PRSY57_0320100 ATP-dependent RNA helicase DDX6, putative K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E PRSY57_1474000 trailer hitch-like protein K18749 LSM14; protein LSM14 E PRSY57_0626100 transportin K18752 TNPO1; transportin-1 E PRSY57_0932800 cAMP-dependent protein kinase catalytic subunit K04345 PKA; protein kinase A [EC:2.7.11.11] D P-body specific factors E PRSY57_1307900 mRNA-decapping enzyme 2, putative K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E PRSY57_1122800 U6 snRNA-associated Sm-like protein LSm1, putative K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E PRSY57_0519400 U6 snRNA-associated Sm-like protein LSm2, putative K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E PRSY57_0819200 U6 snRNA-associated Sm-like protein LSm3, putative K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E PRSY57_1105500 U6 snRNA-associated Sm-like protein LSm4, putative K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E PRSY57_1442600 U6 snRNA-associated Sm-like protein LSm5, putative K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E PRSY57_1324000 U6 snRNA-associated Sm-like protein LSm6, putative K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E PRSY57_1208500 U6 snRNA-associated Sm-like protein LSm7, putative K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E PRSY57_0828600 U6 snRNA-associated Sm-like protein LSm8, putative K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 E PRSY57_0901800 alpha tubulin 1 K07374 TUBA; tubulin alpha E PRSY57_1102300 CCR4-NOT transcription complex subunit 1, putative K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E PRSY57_1127100 CCR4-NOT transcription complex subunit 2, putative K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E PRSY57_0518600 carbon catabolite repressor protein 4, putative K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E PRSY57_0810600 CCR4-associated factor 1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E PRSY57_0923800 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2 E PRSY57_1026700 DNA-directed RNA polymerase II, putative K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 D Stress granule specific factors E PRSY57_1223600 polyadenylate-binding protein, putative K13126 PABPC; polyadenylate-binding protein E PRSY57_1437300 eukaryotic translation initiation factor eIF2A, putative K15026 EIF2A; translation initiation factor 2A E PRSY57_0008400 eukaryotic translation initiation factor, putative K03253 EIF3B; translation initiation factor 3 subunit B E PRSY57_1467900 helicase 45 K03257 EIF4A; translation initiation factor 4A E PRSY57_0419900 eukaryotic initiation factor, putative K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E PRSY57_0826000 receptor for activated c kinase K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein B mRNA degradation factors C 5'-3' decay D Decapping complex E PRSY57_1307900 mRNA-decapping enzyme 2, putative K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] E PRSY57_0320100 ATP-dependent RNA helicase DDX6, putative K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] D Lsm complex E PRSY57_1122800 U6 snRNA-associated Sm-like protein LSm1, putative K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E PRSY57_0519400 U6 snRNA-associated Sm-like protein LSm2, putative K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E PRSY57_0819200 U6 snRNA-associated Sm-like protein LSm3, putative K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E PRSY57_1105500 U6 snRNA-associated Sm-like protein LSm4, putative K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E PRSY57_1442600 U6 snRNA-associated Sm-like protein LSm5, putative K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E PRSY57_1324000 U6 snRNA-associated Sm-like protein LSm6, putative K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E PRSY57_1208500 U6 snRNA-associated Sm-like protein LSm7, putative K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E PRSY57_0828600 U6 snRNA-associated Sm-like protein LSm8, putative K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 D 5' exonucleases E PRSY57_1104800 exonuclease, putative K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] E PRSY57_0907500 exoribonuclease, putative K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] D Other 5'-3' decay factors C 3'-5' decay D Core exosome factors E PRSY57_0717200 exosome complex component CSL4, putative K07573 CSL4; exosome complex component CSL4 E PRSY57_0407800 exosome complex component RRP4, putative K03679 RRP4; exosome complex component RRP4 E PRSY57_1306000 exosome complex component RRP40, putative K03681 RRP40; exosome complex component RRP40 E PRSY57_1427100 exosome complex exonuclease RRP41, putative K11600 RRP41; exosome complex component RRP41 E PRSY57_1339100 exosome complex component RRP42, putative K12589 RRP42; exosome complex component RRP42 E PRSY57_1363400 exosome complex component RRP45, putative K03678 RRP45; exosome complex component RRP45 D Exosome cofactors E PRSY57_1358200 exosome complex exonuclease RRP44, putative K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] E PRSY57_1444800 hypothetical protein K12592 C1D; exosome complex protein LRP1 E PRSY57_0901500 DEAD/DEAH box helicase, putative K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] D TRAMP complex E PRSY57_1331400 nucleotidyltransferase, putative K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E PRSY57_0600700 ATP-dependent RNA helicase, putative K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] D Ski complex D Ccr4-NOT complex E PRSY57_0518600 carbon catabolite repressor protein 4, putative K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E PRSY57_1102300 CCR4-NOT transcription complex subunit 1, putative K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E PRSY57_1127100 CCR4-NOT transcription complex subunit 2, putative K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E PRSY57_0810600 CCR4-associated factor 1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E PRSY57_0506800 cell differentiation protein rcd1, putative K12606 RCD1; CCR4-NOT transcription complex subunit 9 E PRSY57_1433300 ABC transporter, putative K12608 CAF16; CCR4-NOT complex subunit CAF16 D Pan complex D Other 3'-5' decay factors E PRSY57_1442800 poly(A)-specific ribonuclease PARN, putative K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] E PRSY57_0820600 ATP-dependent RNA helicase prh1, putative K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases D Helicases D Other RNA degradosome components E PRSY57_1015300 enolase, putative K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C Other RNA degradation factors D Chaperones E PRSY57_1132400 heat shock protein 70, putative K04043 dnaK; molecular chaperone DnaK E PRSY57_1015000 heat shock protein 60 K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E PRSY57_1231400 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Others D Bacterial Small RNA Regulators B Archeal mRNA degradation factors C Exosome components D Core exosome E PRSY57_0407800 exosome complex component RRP4, putative K03679 RRP4; exosome complex component RRP4 E PRSY57_0717200 exosome complex component CSL4, putative K07573 CSL4; exosome complex component CSL4 D Cofactors E PRSY57_1427100 exosome complex exonuclease RRP41, putative K11600 RRP41; exosome complex component RRP41 E PRSY57_1339100 exosome complex component RRP42, putative K12589 RRP42; exosome complex component RRP42 D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024