+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Porifericola rhodea
%
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ACRISPR-Cas system
B Universal Cas proteins
C PZB74_11275 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
C PZB74_11280 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
D PZB74_11255 cas3; CRISPR-associated helicase Cas3' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
C Subtype I-A factors
D PZB74_11285 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D PZB74_02635 CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
C Subtype I-B factors
D PZB74_11245 cas7b; type I-B CRISPR-associated protein Cas7/Csh2 K19115 csh2; CRISPR-associated protein Csh2
D PZB74_11285 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D PZB74_11250 cas5b; type I-B CRISPR-associated protein Cas5b K19116 cas5h; CRISPR-associated protein Cas5h
C Subtype I-C factors
D PZB74_11285 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-D factors
D PZB74_11285 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D PZB74_02635 CRISPR-associated endoribonuclease Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
C Subtype I-E factors
C Subtype I-F factors
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
D PZB74_11285 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C PZB74_10725 HsdR family type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C PZB74_12380 type I restriction endonuclease subunit R K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C PZB74_10745 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C PZB74_12355 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C PZB74_10750 class I SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C PZB74_10765 class I SAM-dependent DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C PZB74_12350 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
C DNA methyltransferases
D PZB74_06120 site-specific DNA-methyltransferase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
B Type III R-M system
B Type IV R-M system
C PZB74_18235 AAA family ATPase K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
C PZB74_18240 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
C ChpB-ChpS
C YhaV-PrlF
C RelE/StbE-RelB/StbD
C YafQ-dinJ
C YoeB-YefM
C HipA-HipB
C HicA-HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
C CcdB-CcdA
C ParE-ParD
C Doc-Phd
C HigB-HigA
D PZB74_22270 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D PZB74_22275 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
C MqsR-MqsA
C VapC-VapB
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
C BC_0920-BC_0921
C Type II TA system related factors
D PZB74_09760 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D PZB74_08950 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PZB74_19715 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PZB74_20265 DNA gyrase/topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D PZB74_20275 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D PZB74_06665 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C PZB74_07065 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023