+E Transcription factors KO #

  Transcription Factors - Providencia huaxiensis

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D CYG50_01220 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CYG50_00935 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D CYG50_11515 hpaA; 4-hydroxyphenylacetate catabolism regulatory protein HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D CYG50_20875 chbR; transcriptional regulator ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D CYG50_11630 helix-turn-helix transcriptional regulator K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors D CYG50_03800 helix-turn-helix domain-containing protein K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D CYG50_12405 robA; MDR efflux pump AcrAB transcriptional activator RobA K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D CYG50_15575 helix-turn-helix domain-containing protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D CYG50_05495 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D CYG50_01425 helix-turn-helix transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D CYG50_05480 ada; bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D CYG50_20680 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CYG50_17600 ilvY; HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D CYG50_13280 metR; HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D CYG50_12265 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D CYG50_17200 oxyR; DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D CYG50_22755 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D CYG50_22515 leuO; transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D CYG50_04925 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D CYG50_21975 LysR family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D CYG50_18995 dsdC; DNA-binding transcriptional regulator DsdC K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D CYG50_12970 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D CYG50_14840 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D CYG50_11315 hypT; hypochlorite stress DNA-binding transcriptional regulator HypT K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D CYG50_17555 hdfR; HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D CYG50_13450 deoR; DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D CYG50_14965 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D CYG50_14195 DeoR/GlpR transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D CYG50_19060 DeoR/GlpR transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D CYG50_01905 ulaR; HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor C LacI family D CYG50_11350 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CYG50_01615 substrate-binding domain-containing protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CYG50_15885 rbsR; ribose operon transcriptional repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CYG50_19000 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D CYG50_17110 cytR; DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D CYG50_08065 LacI family DNA-binding transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D CYG50_22535 cra; catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D CYG50_07375 purR; HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D CYG50_13840 gntR; gluconate operon transcriptional repressor GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D CYG50_02455 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D CYG50_19645 UTRA domain-containing protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D CYG50_04630 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D CYG50_22680 pdhR; pyruvate dehydrogenase complex transcriptional repressor PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CYG50_18965 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CYG50_16310 FCD domain-containing protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D CYG50_19105 exuR; transcriptional regulator ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D CYG50_05695 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D CYG50_02030 GntR family transcriptional regulator K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism C TetR/AcrR family D CYG50_19455 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D CYG50_00635 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D CYG50_08410 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D CYG50_21475 acrR; multidrug efflux transporter transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D CYG50_15570 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D CYG50_16425 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D CYG50_15535 TetR/AcrR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D CYG50_00380 TetR/AcrR family transcriptional regulator K19060 mphR; TetR/AcrR family transcriptional regulator, macrolide resistance operon repressor D CYG50_17210 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D CYG50_19445 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D CYG50_10035 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D CYG50_15930 asnC; transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D CYG50_09580 lrp; leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CYG50_09540 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CYG50_11825 Lrp/AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D CYG50_07060 Lrp/AsnC family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon C LuxR family C MarR family D CYG50_07345 slyA; transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D CYG50_10680 mprA; transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D CYG50_12620 merR; Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D CYG50_21610 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CYG50_17460 zntR; Zn(2+)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D CYG50_13685 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D CYG50_09475 fur; ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CYG50_13920 zur; zinc uptake transcriptional repressor Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D CYG50_13975 iclR; glyoxylate bypass operon transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D CYG50_08425 kdgR; DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D CYG50_09515 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D CYG50_07010 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D CYG50_14455 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CYG50_19110 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CYG50_06090 FNR family transcription factor K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D CYG50_20295 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D CYG50_09145 Crp/Fnr family transcriptional regulator K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator C Rrf2 family D CYG50_02050 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D CYG50_17960 nsrR; nitric oxide-sensing transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D CYG50_15795 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D CYG50_14405 SIS domain-containing protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D CYG50_19095 MurR/RpiR family transcriptional regulator K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D CYG50_06325 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D CYG50_17270 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CYG50_19705 fis; DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CYG50_12420 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D CYG50_01475 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D CYG50_18110 transcriptional regulator K07724 ner; Ner family transcriptional regulator D CYG50_01380 nucleotide excision repair protein K07724 ner; Ner family transcriptional regulator D CYG50_19430 transcriptional regulator K07724 ner; Ner family transcriptional regulator D CYG50_04280 transcriptional regulator K07724 ner; Ner family transcriptional regulator D CYG50_05710 transcriptional regulator K07724 ner; Ner family transcriptional regulator D CYG50_22485 sgrR; HTH-type transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator D CYG50_12445 nadR; multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D CYG50_15350 norR; nitric oxide reductase transcriptional regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D CYG50_10185 modE; molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein D CYG50_09150 transporter K02019 modE; molybdate transport system regulatory protein D CYG50_12105 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator D CYG50_18245 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator D CYG50_04975 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D CYG50_17130 metJ; met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D CYG50_08900 putA; trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family D CYG50_14515 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator C Others D CYG50_01505 frmR; formaldehyde-responsive transcriptional repressor FrmR K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D CYG50_11875 bolA; transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D CYG50_01265 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CYG50_00535 transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CYG50_13180 rfaH; transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH D CYG50_18100 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism D CYG50_10425 ROK family protein K02565 nagC; N-acetylglucosamine repressor D CYG50_16370 ROK family protein K02565 nagC; N-acetylglucosamine repressor D CYG50_05090 ROK family protein K15545 mlc; transcriptional regulator of PTS gene D CYG50_02390 MltR family transcriptional regulator K02562 mtlR; mannitol operon repressor D CYG50_07240 tyrR; transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D CYG50_03940 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D CYG50_15120 paaX; phenylacetic acid degradation operon negative regulatory protein PaaX K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D CYG50_07275 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator D CYG50_07260 pspC; envelope stress response membrane protein PspC K03973 pspC; phage shock protein C D CYG50_19820 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D CYG50_04370 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D CYG50_21735 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein D CYG50_15530 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D CYG50_18525 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein D CYG50_11255 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D CYG50_11065 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D CYG50_11970 caiF; carnitine metabolism transcriptional regulator CaiF K08277 caiF; transcriptional activator CaiF D CYG50_21380 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D CYG50_12060 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D CYG50_10925 sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl D CYG50_13470 AAA family ATPase K14414 rtcR; transcriptional regulatory protein RtcR D CYG50_06735 hypothetical protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D CYG50_22540 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0