+F Repair protein KO
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DNA Repair and Recombination Proteins - Pontimonas salivibrio
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D C3B54_111422 methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D C3B54_11283 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D C3B54_11849 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D C3B54_11872 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E C3B54_111459 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E C3B54_11628 Adenine glycosylase, repair enzyme MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E C3B54_11434 Rad25-like DNA excision repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D C3B54_111169 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D C3B54_11632 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D C3B54_11938 dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D C3B54_111422 methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D C3B54_11693 methylphosphotriester-DNA--protein-cysteine methyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D C3B54_11283 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D C3B54_11849 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D C3B54_11872 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D C3B54_111519 deoxyribodipyrimidine photolyase-like protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E C3B54_111459 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E C3B54_11262 DNA 3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E C3B54_11628 Adenine glycosylase, repair enzyme MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E C3B54_11584 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E C3B54_11738 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E C3B54_111677 exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E C3B54_1199 exodeoxyribonuclease-3 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
E C3B54_11646 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E C3B54_111069 DNA polymerase-1 / 5'-3' exonuclease / 3'-5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E C3B54_111065 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E C3B54_111066 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E C3B54_111064 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E C3B54_111543 ATP-dependent DNA helicase PcrA/UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E C3B54_111547 double strand break repair helicase AdnB K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E C3B54_11366 DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E C3B54_111069 DNA polymerase-1 / 5'-3' exonuclease / 3'-5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
E C3B54_11646 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F C3B54_11300 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F C3B54_11301 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F C3B54_11337 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F C3B54_111095 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F C3B54_11512 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
E C3B54_11534 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E C3B54_11533 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E C3B54_11990 DNA polymerase-3 subunit alpha DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E C3B54_11134 DNA polymerase-3 subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E C3B54_11796 DNA polymerase-3 subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E C3B54_11397 DNA polymerase-3 subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E C3B54_111034 DNA polymerase-3 subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E C3B54_111731 DNA polymerase-3 subunit gamma/tau DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E C3B54_11646 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E C3B54_111543 ATP-dependent DNA helicase PcrA/UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E C3B54_111547 double strand break repair helicase AdnB K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E C3B54_11366 DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E C3B54_11152 single-stranded DNA binding protein priB K03111 ssb; single-strand DNA-binding protein
E C3B54_11729 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E C3B54_111389 recombination protein RecA K03553 recA; recombination protein RecA
E C3B54_111125 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E C3B54_111124 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E C3B54_111126 Holliday junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E C3B54_111092 primosomal protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E C3B54_111389 recombination protein RecA K03553 recA; recombination protein RecA
E C3B54_1127 DNA repair protein RadA/Sms K04485 radA; DNA repair protein RadA/Sms
E C3B54_11133 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E C3B54_11579 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E C3B54_11817 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E C3B54_111730 recombination protein RecR K06187 recR; recombination protein RecR
E C3B54_111180 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E C3B54_111125 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E C3B54_111124 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E C3B54_111126 Holliday junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F C3B54_11130 DNA gyrase subunit GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F C3B54_11933 DNA gyrase subunit ParC K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F C3B54_11131 DNA gyrase subunit GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F C3B54_11932 DNA gyrase subunit ParE K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F C3B54_11395 DNA topoisomerase-1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F C3B54_11183 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F C3B54_11817 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F C3B54_111730 recombination protein RecR K06187 recR; recombination protein RecR
F C3B54_11646 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F C3B54_111065 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F C3B54_111066 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D C3B54_111389 recombination protein RecA K03553 recA; recombination protein RecA
D C3B54_111222 SOS repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D C3B54_111180 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D C3B54_111027 DNA pol IV K14161 imuB; protein ImuB
D C3B54_111028 Error-prone DNA polymerase DnaE2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D C3B54_11152 single-stranded DNA binding protein priB K03111 ssb; single-strand DNA-binding protein
D C3B54_11729 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D C3B54_111388 RecX protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D C3B54_111169 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D C3B54_11632 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D C3B54_111712 8-oxo-GTP phosphatase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D C3B54_111178 8-oxo-GDP phosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D C3B54_11938 dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D C3B54_11489 ribonucleoside-diphosphate reductase alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D C3B54_11490 ribonucleoside-diphosphate reductase beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024