+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pontimonas salivibrio

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D C3B54_111422 methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D C3B54_11283 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D C3B54_11849 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D C3B54_11872 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E C3B54_111459 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E C3B54_11628 Adenine glycosylase, repair enzyme MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E C3B54_11434 Rad25-like DNA excision repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D C3B54_111169 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C3B54_11632 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C3B54_11938 dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D C3B54_111422 methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D C3B54_11693 methylphosphotriester-DNA--protein-cysteine methyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D C3B54_11283 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D C3B54_11849 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D C3B54_11872 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D C3B54_111519 deoxyribodipyrimidine photolyase-like protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E C3B54_111459 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E C3B54_11262 DNA 3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E C3B54_11628 Adenine glycosylase, repair enzyme MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E C3B54_11584 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E C3B54_11738 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D AP endonucleases E C3B54_111677 exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E C3B54_1199 exodeoxyribonuclease-3 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E C3B54_11646 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E C3B54_111069 DNA polymerase-1 / 5'-3' exonuclease / 3'-5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E C3B54_111065 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E C3B54_111066 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E C3B54_111064 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E C3B54_111543 ATP-dependent DNA helicase PcrA/UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E C3B54_111547 double strand break repair helicase AdnB K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E C3B54_11366 DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E C3B54_111069 DNA polymerase-1 / 5'-3' exonuclease / 3'-5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7] E C3B54_11646 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F C3B54_11300 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F C3B54_11301 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F C3B54_11337 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F C3B54_111095 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F C3B54_11512 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E C3B54_11534 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E C3B54_11533 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E C3B54_11990 DNA polymerase-3 subunit alpha DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E C3B54_11134 DNA polymerase-3 subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E C3B54_11796 DNA polymerase-3 subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E C3B54_11397 DNA polymerase-3 subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E C3B54_111034 DNA polymerase-3 subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E C3B54_111731 DNA polymerase-3 subunit gamma/tau DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E C3B54_11646 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E C3B54_111543 ATP-dependent DNA helicase PcrA/UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E C3B54_111547 double strand break repair helicase AdnB K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E C3B54_11366 DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E C3B54_11152 single-stranded DNA binding protein priB K03111 ssb; single-strand DNA-binding protein E C3B54_11729 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E C3B54_111389 recombination protein RecA K03553 recA; recombination protein RecA E C3B54_111125 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E C3B54_111124 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E C3B54_111126 Holliday junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E C3B54_111092 primosomal protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E C3B54_111389 recombination protein RecA K03553 recA; recombination protein RecA E C3B54_1127 DNA repair protein RadA/Sms K04485 radA; DNA repair protein RadA/Sms E C3B54_11133 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E C3B54_11579 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E C3B54_11817 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E C3B54_111730 recombination protein RecR K06187 recR; recombination protein RecR E C3B54_111180 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E C3B54_111125 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E C3B54_111124 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E C3B54_111126 Holliday junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F C3B54_11130 DNA gyrase subunit GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F C3B54_11933 DNA gyrase subunit ParC K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F C3B54_11131 DNA gyrase subunit GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F C3B54_11932 DNA gyrase subunit ParE K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F C3B54_11395 DNA topoisomerase-1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F C3B54_11183 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F C3B54_11817 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F C3B54_111730 recombination protein RecR K06187 recR; recombination protein RecR F C3B54_11646 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F C3B54_111065 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F C3B54_111066 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D C3B54_111389 recombination protein RecA K03553 recA; recombination protein RecA D C3B54_111222 SOS repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D C3B54_111180 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D C3B54_111027 DNA pol IV K14161 imuB; protein ImuB D C3B54_111028 Error-prone DNA polymerase DnaE2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D C3B54_11152 single-stranded DNA binding protein priB K03111 ssb; single-strand DNA-binding protein D C3B54_11729 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C3B54_111388 RecX protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D C3B54_111169 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C3B54_11632 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C3B54_111712 8-oxo-GTP phosphatase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D C3B54_111178 8-oxo-GDP phosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D C3B54_11938 dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D C3B54_11489 ribonucleoside-diphosphate reductase alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D C3B54_11490 ribonucleoside-diphosphate reductase beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024