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Transcription Machinery - Pseudomonas salmasensis
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E HU731_001635 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E HU731_012610 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E HU731_012770 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E HU731_012765 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E HU731_015255 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E HU731_013080 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E HU731_022475 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E HU731_007795 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HU731_008145 sigX; RNA polymerase sigma factor SigX K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HU731_009185 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HU731_023165 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HU731_003115 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HU731_016960 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E HU731_013265 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E HU731_021315 sigma-70 family RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E HU731_027955 sigma-70 family RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E HU731_016760 sigma-70 family RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E HU731_025715 sigma-70 family RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E HU731_014015 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
E HU731_020510 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
E HU731_007140 RNA polymerase sigma factor FliA K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E HU731_022700 rapA; RNA polymerase-associated protein RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E HU731_011450 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
E HU731_012450 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
E HU731_012795 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E HU731_020340 glutathione S-transferase N-terminal domain-containing protein K03599 sspA; stringent starvation protein A
E HU731_020345 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
E HU731_000085 PAS domain-containing sensor histidine kinase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E HU731_000090 alpha/beta hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ
E HU731_023170 anti-sigma factor K03597 rseA; sigma-E factor negative regulatory protein RseA
E HU731_023175 MucB/RseB C-terminal domain-containing protein K03598 rseB; sigma-E factor negative regulatory protein RseB
D Transcription elongation factors
E HU731_003410 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
E HU731_011355 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
E HU731_015850 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
E HU731_011510 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E HU731_024440 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E HU731_014825 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024