+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Pseudomonas syringae pv. syringae B728a

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D Psyr_3951 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases D Psyr_0650 Protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D Psyr_0564 Exonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C Psyr_3950 Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era K03595 era; GTPase C Psyr_0703 GTP-binding protein, HSR1-related:GTP1/OBG subdomain protein K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C Psyr_0835 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor C Psyr_3262 dnaK suppressor protein, putative K06204 dksA; RNA polymerase-binding transcription factor C Psyr_4181 Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication K02600 nusA; transcription termination/antitermination protein NusA C Psyr_4458 Antitermination protein NusB K03625 nusB; transcription antitermination protein NusB C Psyr_4560 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D Psyr_3981 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Psyr_4627 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Psyr_0017 16S rRNA m(5)C-967 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Psyr_0986 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Psyr_4754 16S rRNA m(2)G-966 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Psyr_0453 16S rRNA m(3)U-1498 methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Psyr_5131 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Psyr_4110 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Psyr_4112 Protein of unknown function UPF0011 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Psyr_1325 Protein of unknown function DUF548 K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D Psyr_1330 23S rRNA m(1)G-745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D Psyr_0580 23S rRNA Gm-2251 2'-O-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Psyr_4188 23S rRNA Um-2552 2'-O-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Psyr_1085 23S rRNA m(6)A-1618 methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D Psyr_4366 Protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Psyr_4172 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Psyr_2337 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Psyr_4764 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Psyr_4772 Protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D Psyr_2108 23S rRNA m(2)G-2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D Psyr_3403 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D Psyr_1245 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Psyr_3696 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Psyr_1610 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Psyr_2133 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Psyr_3581 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Psyr_1639 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Psyr_0726 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Psyr_4336 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D Psyr_1390 RNA-binding S4 K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C Psyr_0173 SSU ribosomal protein S6P modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C Psyr_1283 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C Psyr_1392 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C Psyr_4402 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C Psyr_1850 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C Psyr_3193 Transcription factor jumonji, jmjC K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C Psyr_3951 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Psyr_1638 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] C Psyr_4159 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] C Psyr_0484 Conserved hypothetical protein 250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C Psyr_0516 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C Psyr_3950 Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era K03595 era; GTPase C Psyr_0563 Protein of unknown function DUF258 K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C Psyr_1252 Small GTP-binding protein protein domain:GTP-binding protein K03977 engA; GTPase C Psyr_0703 GTP-binding protein, HSR1-related:GTP1/OBG subdomain protein K03979 obgE; GTPase [EC:3.6.5.-] C Psyr_0573 GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C Psyr_0022 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C Psyr_0209 RelA/SpoT protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C Psyr_4179 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C Psyr_4182 Protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP C Psyr_4367 Iojap-related protein K09710 ybeB; ribosome-associated protein C Psyr_4347 Protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor C Psyr_4189 Protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein C Psyr_4155 Protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein C Psyr_2107 Ribosome modulation factor K03812 rmf; ribosome modulation factor C Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor C Psyr_0941 Conserved hypothetical protein 92 K06942 ychF; ribosome-binding ATPase C Psyr_1643 Protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024