+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Pseudogulbenkiania sp. NH8B

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D NH8B_1580 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D NH8B_2334 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C NH8B_1581 GTP-binding protein Era K03595 era; GTPase C NH8B_3677 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C NH8B_4000 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor C NH8B_2853 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA C NH8B_2384 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB C NH8B_0346 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D NH8B_0099 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D NH8B_4014 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D NH8B_0287 gidB; 16S rRNA methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D NH8B_0779 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D NH8B_0338 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D NH8B_4072 rsmE; 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D NH8B_3797 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D NH8B_0164 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D NH8B_3245 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D NH8B_3807 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D NH8B_3939 protein of unknown function K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D NH8B_0201 putative rRNA methyltransferase, hemolysin A-like protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D NH8B_0759 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D NH8B_3493 ftsJ; ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D NH8B_1039 putative SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D NH8B_3899 SPOUT methyltransferase superfamily protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D NH8B_2790 protein of unknown function K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D NH8B_3414 23S rRNA m(2)G2445 methyltransferase K25136 rlmK; 23S rRNA (guanine2069-N7)-methyltransferase [EC:2.1.1.264] D NH8B_0647 putative RNA methylase family K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D NH8B_1891 radical SAM domain protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D NH8B_3160 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D NH8B_0201 putative rRNA methyltransferase, hemolysin A-like protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D NH8B_1157 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D NH8B_1024 rluA; pseudouridine synthase Rlu family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D NH8B_3300 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D NH8B_2916 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D NH8B_1922 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D NH8B_0681 rluE; ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D NH8B_2657 rluF; ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D NH8B_2784 rluF; ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C NH8B_3267 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C NH8B_0237 rimJ; ribosomal-protein-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C NH8B_0671 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C NH8B_1321 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C NH8B_3392 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C NH8B_1932 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C NH8B_0809 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C NH8B_1580 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C NH8B_2915 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C NH8B_0208 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] C NH8B_0467 yqgF; holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C NH8B_1800 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] B GTPases C NH8B_1581 GTP-binding protein Era K03595 era; GTPase C NH8B_2337 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C NH8B_3153 GTP-binding protein EngA K03977 engA; GTPase C NH8B_3677 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] C NH8B_0465 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A C NH8B_2444 GTP-binding protein, HSR1-related K03665 hflX; GTPase C NH8B_3151 GTP-binding proten HflX K03665 hflX; GTPase B Other maturation factors C NH8B_2410 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C NH8B_3867 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C NH8B_1054 metal dependent phosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C NH8B_3475 spoT; (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C NH8B_2851 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C NH8B_2854 protein of unknown function K09748 rimP; ribosome maturation factor RimP C NH8B_3308 S4 RNA-binding domain protein K14761 rlbA; ribosome-associated protein C NH8B_3898 protein of unknown function K09710 ybeB; ribosome-associated protein C NH8B_0391 protein of unknown function K07042 ybeY; probable rRNA maturation factor C NH8B_3494 CRS1/YhbY domain protein K07574 yhbY; RNA-binding protein C NH8B_2625 protein of unknown function K09889 yjgA; ribosome-associated protein C NH8B_3330 sigma 54 modulation protein/S30EA ribosomal protein K05808 hpf; ribosome hibernation promoting factor C NH8B_3573 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C NH8B_3243 protein of unknown function K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 22, 2025