+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Pseudonocardia sp. EC080625-04
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D FRP1_18910 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D FRP1_19505 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C FRP1_06155 GTPase Era K03595 era; GTPase
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C FRP1_23970 dksa/trar family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C FRP1_18430 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C FRP1_09235 antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C FRP1_01570 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D FRP1_22790 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D FRP1_09320 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D FRP1_21415 MFS transporter K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D FRP1_06125 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D FRP1_26395 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D FRP1_22835 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D FRP1_13760 cytochrome C peroxidase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D FRP1_02860 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D FRP1_28090 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D FRP1_18660 RNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D FRP1_13760 cytochrome C peroxidase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D FRP1_08030 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D FRP1_13690 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D FRP1_15470 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D FRP1_27745 hypothetical protein K21515 aviRa; 23S rRNA (guanine2535-N1)-methyltransferase [EC:2.1.1.209]
B ribosomal protein modification factors
C FRP1_02070 alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C FRP1_22875 GCN5 family acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C FRP1_18770 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C FRP1_18235 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
B rRNA processing factors
C FRP1_18910 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C FRP1_09140 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C FRP1_08625 heavy metal transporter K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C FRP1_06155 GTPase Era K03595 era; GTPase
C FRP1_02920 GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C FRP1_13670 engA; GTP-binding protein Der K03977 engA; GTPase
C FRP1_18030 ATP-binding protein K03665 hflX; GTPase
B Other maturation factors
C FRP1_03275 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C FRP1_09040 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C FRP1_18415 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C FRP1_18435 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C FRP1_21410 RNA-binding protein S4 K14761 rlbA; ribosome-associated protein
C FRP1_05960 Iojap family protein K09710 ybeB; ribosome-associated protein
C FRP1_06140 heat-shock protein K07042 ybeY; probable rRNA maturation factor
C FRP1_22255 GTP-binding protein K06942 ychF; ribosome-binding ATPase
C FRP1_18920 metal-binding protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024