+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudocitrobacter corydidari

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D G163CM_11070 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D G163CM_21450 phrB; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E G163CM_00850 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E G163CM_43580 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E G163CM_10720 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D G163CM_28010 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D G163CM_36940 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D G163CM_11070 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D G163CM_04130 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D G163CM_21450 phrB; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D G163CM_04140 alkB; Alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E G163CM_00850 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E G163CM_42370 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E G163CM_05490 alkA; DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E G163CM_43580 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E G163CM_37890 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E G163CM_36990 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E G163CM_21360 nei; Endonuclease 8 K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E G163CM_10720 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E G163CM_15240 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E G163CM_04480 nfo; Endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E G163CM_33170 nfi; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E G163CM_44420 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E G163CM_02200 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E G163CM_36850 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E G163CM_36050 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E G163CM_32530 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E G163CM_20650 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E G163CM_07390 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E G163CM_11890 cho; Excinuclease cho K05984 cho; excinuclease Cho [EC:3.1.25.-] E G163CM_33920 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E G163CM_36050 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E G163CM_02200 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E G163CM_36850 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F G163CM_33400 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F G163CM_33390 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F G163CM_40080 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F G163CM_36830 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F G163CM_16190 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E G163CM_45920 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E G163CM_31250 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E G163CM_45140 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E G163CM_06070 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E G163CM_01550 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E G163CM_24390 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E G163CM_08230 exoX; Exodeoxyribonuclease 10 K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E G163CM_27150 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E G163CM_35480 dnaN; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E G163CM_30260 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E G163CM_21990 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E G163CM_16220 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E G163CM_26830 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E G163CM_23600 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E G163CM_29480 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E G163CM_08250 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E G163CM_02200 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E G163CM_36850 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E G163CM_33920 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E G163CM_32520 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E G163CM_39350 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E G163CM_06840 vsr; Very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E G163CM_45270 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E G163CM_45250 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E G163CM_45280 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E G163CM_46460 recA; Protein RecA K03553 recA; recombination protein RecA E G163CM_08080 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E G163CM_08090 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E G163CM_08000 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E G163CM_34870 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E G163CM_31000 priB; Primosomal replication protein N K02686 priB; primosomal replication protein N E G163CM_23630 priC; Primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E G163CM_29630 dnaT; Primosomal protein 1 K02317 dnaT; DNA replication protein DnaT E G163CM_06070 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E G163CM_24720 sbcC; Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E G163CM_24710 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E G163CM_46460 recA; Protein RecA K03553 recA; recombination protein RecA E G163CM_29300 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E G163CM_35470 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E G163CM_36800 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E G163CM_44420 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E G163CM_00980 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E G163CM_23580 recR; Recombination protein RecR K06187 recR; recombination protein RecR E G163CM_00490 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E G163CM_24740 rdgC; Recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E G163CM_08080 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E G163CM_08090 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E G163CM_08000 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E G163CM_04290 radD; Putative DNA repair helicase RadD K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E G163CM_24720 sbcC; Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E G163CM_24710 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E G163CM_30220 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F G163CM_04070 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F G163CM_35460 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F G163CM_14710 topA_1; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F G163CM_33150 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha F G163CM_24050 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F G163CM_44420 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F G163CM_00980 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F G163CM_23580 recR; Recombination protein RecR K06187 recR; recombination protein RecR F G163CM_02200 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F G163CM_36850 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F G163CM_40410 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F G163CM_09690 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F G163CM_18810 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F G163CM_06070 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F G163CM_33860 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F G163CM_32530 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F G163CM_20650 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F G163CM_09440 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D G163CM_26680 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D G163CM_13110 umuC; Protein UmuC K03502 umuC; DNA polymerase V D G163CM_13120 umuD_2; Protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D G163CM_46460 recA; Protein RecA K03553 recA; recombination protein RecA D G163CM_32660 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D G163CM_00490 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D G163CM_28440 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D G163CM_32520 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D G163CM_36870 hypothetical protein K14623 dinD; DNA-damage-inducible protein D D G163CM_16600 dinI; DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D G163CM_46470 recX; Regulatory protein RecX K03565 recX; regulatory protein D G163CM_29970 ISNCY family transposase ISRor2 K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] D G163CM_19940 ISNCY family transposase ISVsa17 K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] D G163CM_27670 ISNCY family transposase ISRor2 K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-] B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D G163CM_34320 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D G163CM_18340 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D G163CM_20400 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D G163CM_08610 yoaA; putative ATP-dependent DNA helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D G163CM_28010 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D G163CM_36940 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D G163CM_04040 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D G163CM_46670 nrdE; Ribonucleoside-diphosphate reductase 2 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D G163CM_04030 nrdB; Ribonucleoside-diphosphate reductase 1 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D G163CM_46660 nrdF; Ribonucleoside-diphosphate reductase 2 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024