+E Ribosome biogenesis KO
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Ribosome Biogenesis - Pseudoalteromonas sp. SM9913
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D PSM_A2335 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D PSM_B0305 putative kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D PSM_A0378 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C PSM_A2334 era; GTP-binding protein Era K03595 era; GTPase
C PSM_A2691 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C PSM_A2454 dksAA; RNA polymerase factor K06204 dksA; RNA polymerase-binding transcription factor
C PSM_A1831 putative DksA-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
C PSM_A1066 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C PSM_A0706 nusB; transcription termination factor K03625 nusB; transcription antitermination protein NusB
C PSM_A0232 nusG; transcription antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D PSM_A0090 putative ribosomal RNA pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PSM_A0358 rsuA; 16S rRNA pseudouridylate 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PSM_A2670 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PSM_A0024 rsmB; 16S rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PSM_A2737 N-6 adenine-specific DNA methylase domain-containing protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PSM_A2576 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PSM_A1288 yebU; rRNA (cytosine-C(5)-)-methyltransferase RsmF K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D PSM_A3117 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PSM_A0493 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PSM_A0484 methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PSM_A0421 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D PSM_A1361 putative 23S rRNA m1G745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D PSM_A0535 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PSM_A2176 rrmJ; 23S rRNA methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D PSM_B0367 putative SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D PSM_A0841 rsmD; ribosomal RNA small subunit methyltransferase D K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D PSM_A1999 SPOUT methyltransferase superfamily protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PSM_A1876 yccW; methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PSM_A1917 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PSM_A2795 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D PSM_A1639 23S rRNA m(2)G2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D PSM_A1960 ygdE; putative RNA 2'-O-ribose methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D PSM_B0177 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PSM_A2330 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D PSM_A1821 23S rRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PSM_A2662 rluA; pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PSM_A1629 23S rRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PSM_B0287 ribosomal large subunit pseudouridine synthase A (pseudouridylate synthase, 23S RNA-specific) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PSM_A1367 rluB; pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PSM_A1244 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D PSM_A1006 rluD; 23S rRNA pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PSM_A1660 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D PSM_B0517 putative ribosomal RNA pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C PSM_A2408 rimI; ribosomal-protein-alanine acetyltransferase (acetylating enzyme for N-terminal of ribosomal protein S18) K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C PSM_A2558 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C PSM_A1016 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C PSM_A0079 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C PSM_A2742 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C PSM_A1046 prmB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C PSM_A1665 RmlC-like domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C PSM_A2335 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3]
C PSM_A1243 RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of K08300 rne; ribonuclease E [EC:3.1.26.12]
C PSM_A0335 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C PSM_A2579 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C PSM_A0117 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C PSM_A1057 deaD; ATP-dependent RNA helicase, cold shock protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C PSM_A2535 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C PSM_A2334 era; GTP-binding protein Era K03595 era; GTPase
C PSM_A0377 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C PSM_B0169 engA; GTP-binding protein EngA K03977 engA; GTPase
C PSM_A2691 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C PSM_A3054 rbgA; ribosomal biogenesis GTPase K14540 rbgA; ribosome biogenesis GTPase A
C PSM_A2819 hflX; protease GTPase subunit K03665 hflX; GTPase
B Other maturation factors
C PSM_A0032 double-stranded RNA-binding protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C PSM_B0157 putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C PSM_A2860 spoT; bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C PSM_A1068 ribosome-binding factor A, role in processing of 16S rRNA K02834 rbfA; ribosome-binding factor A
C PSM_A1065 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C PSM_A0174 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
C PSM_A1998 hypothetical protein K09710 ybeB; ribosome-associated protein
C PSM_A1982 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C PSM_A2177 yhbY; RNA binding protein K07574 yhbY; RNA-binding protein
C PSM_A0277 ABC transporter ATP-binding protein K09889 yjgA; ribosome-associated protein
C PSM_A1521 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor
C PSM_A0399 hypothetical protein K05808 hpf; ribosome hibernation promoting factor
C PSM_A2390 ribosomal subunit interface protein, protein Y K05809 raiA; ribosome-associated inhibitor A
C PSM_A1977 engD; translation-associated GTPase K06942 ychF; ribosome-binding ATPase
C PSM_A1247 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024