+F Repair protein KO
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DNA Repair and Recombination Proteins - Punctularia strigosozonata
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PUNSTDRAFT_119399 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E PUNSTDRAFT_69726 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PUNSTDRAFT_116854 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PUNSTDRAFT_102366 DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PUNSTDRAFT_66781 DNA glycosylase K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E PUNSTDRAFT_70295 DNA glycosylase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E PUNSTDRAFT_100556 DNA glycosylase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E PUNSTDRAFT_121434 hypothetical protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E PUNSTDRAFT_104380 AP endonuclease K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E PUNSTDRAFT_113069 DNase I-like protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F PUNSTDRAFT_73633 delta DNA polymerase K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F PUNSTDRAFT_139385 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F PUNSTDRAFT_143307 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
F PUNSTDRAFT_54280 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F PUNSTDRAFT_122720 DUF1744-domain-containing protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F PUNSTDRAFT_112289 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F PUNSTDRAFT_127408 histone-fold-containing protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F PUNSTDRAFT_97839 histone-fold-containing protein K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E PUNSTDRAFT_68708 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E PUNSTDRAFT_60527 PIN domain-like protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E PUNSTDRAFT_103268 PIN domain-like protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E PUNSTDRAFT_79558 DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E PUNSTDRAFT_141226 Nucleotidyltransferase K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
D Other BER factors
E PUNSTDRAFT_74951 phospholipase D/nuclease K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E PUNSTDRAFT_114838 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E PUNSTDRAFT_28176 HIT-like protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E PUNSTDRAFT_117408 PNK3P-domain-containing protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E PUNSTDRAFT_83017 PARP-domain-containing protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F PUNSTDRAFT_141552 Rad4-domain-containing protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F PUNSTDRAFT_98824 UV excision repair protein Rad23 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F PUNSTDRAFT_80891 Rbx1 protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F PUNSTDRAFT_57860 Cullin-4B K10609 CUL4; cullin 4
F PUNSTDRAFT_97523 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F PUNSTDRAFT_53201 RNI-like protein K15082 RAD7; DNA repair protein RAD7
F PUNSTDRAFT_64262 hypothetical protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F PUNSTDRAFT_123387 beta and beta-prime subunits of DNA dependent RNA-polymerase K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F PUNSTDRAFT_48856 DNA-dependent RNA polymerase II second largest subunit K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F PUNSTDRAFT_61925 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F PUNSTDRAFT_93702 DNA-directed RNA polymerase RPB5 subunit K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F PUNSTDRAFT_59013 subunit common to RNA polymerase I K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F PUNSTDRAFT_73661 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F PUNSTDRAFT_58431 RNA polymerase K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F PUNSTDRAFT_49325 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F PUNSTDRAFT_68558 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F PUNSTDRAFT_52846 RBP11-like subunits of RNA polymerase K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F PUNSTDRAFT_64752 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F PUNSTDRAFT_80891 Rbx1 protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F PUNSTDRAFT_57860 Cullin-4B K10609 CUL4; cullin 4
F PUNSTDRAFT_97523 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E Other TCR factor
F PUNSTDRAFT_25290 Elf1-domain-containing protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E PUNSTDRAFT_109122 DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E PUNSTDRAFT_127101 DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E PUNSTDRAFT_50633 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E PUNSTDRAFT_62710 Ssl1-domain-containing protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E PUNSTDRAFT_119149 transcription factor Tfb4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E PUNSTDRAFT_123034 transcription factor Tfb2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E PUNSTDRAFT_54857 nucleotide excision repair TFIIH subunit K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E PUNSTDRAFT_123096 CMGC/CDK/CDK7 protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E PUNSTDRAFT_129167 cyclin-like protein K06634 CCNH; cyclin H
D RPA (replication factor A)
E PUNSTDRAFT_104588 replication factor-a protein K07466 RFA1; replication factor A1
E PUNSTDRAFT_114758 hypothetical protein K10739 RFA2; replication factor A2
D Other NER factors
E PUNSTDRAFT_109805 hypothetical protein K10847 XPA; DNA-repair protein complementing XP-A cells
E PUNSTDRAFT_98429 DNA repair protein rad10 K10849 ERCC1; DNA excision repair protein ERCC-1
E PUNSTDRAFT_54777 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E PUNSTDRAFT_113147 PIN domain-like protein K10846 ERCC5; DNA excision repair protein ERCC-5
E PUNSTDRAFT_79558 DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E PUNSTDRAFT_113086 ARM repeat-containing protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E PUNSTDRAFT_86155 Cullin-domain-containing protein K03869 CUL3; cullin 3
E PUNSTDRAFT_138383 POZ domain-containing protein K03872 ELOC; elongin-C
E PUNSTDRAFT_144721 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E PUNSTDRAFT_143768 DNA mismatch repair protein K08735 MSH2; DNA mismatch repair protein MSH2
E PUNSTDRAFT_121053 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E PUNSTDRAFT_87965 DNA mismatch repair protein Msh6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E PUNSTDRAFT_113462 DNA mismatch repair protein MutL K08734 MLH1; DNA mismatch repair protein MLH1
E PUNSTDRAFT_72337 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E PUNSTDRAFT_125326 hypothetical protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E PUNSTDRAFT_73633 delta DNA polymerase K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E PUNSTDRAFT_139385 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E PUNSTDRAFT_143307 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E PUNSTDRAFT_54280 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E PUNSTDRAFT_104588 replication factor-a protein K07466 RFA1; replication factor A1
E PUNSTDRAFT_114758 hypothetical protein K10739 RFA2; replication factor A2
D RFC (replication factor C)
E PUNSTDRAFT_116547 DNA replication factor C large subunit K10754 RFC1; replication factor C subunit 1
E PUNSTDRAFT_140408 P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
E PUNSTDRAFT_77897 P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
E PUNSTDRAFT_93526 P-loop containing nucleoside triphosphate hydrolase protein K10756 RFC3_5; replication factor C subunit 3/5
E PUNSTDRAFT_133307 P-loop containing nucleoside triphosphate hydrolase protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E PUNSTDRAFT_68708 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E PUNSTDRAFT_134221 hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E PUNSTDRAFT_114031 PIN domain-like protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E PUNSTDRAFT_79558 DNA ligase I K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E PUNSTDRAFT_121470 WD40 repeat-like protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E PUNSTDRAFT_110539 DNA repair exonuclease K10865 MRE11; double-strand break repair protein MRE11
E PUNSTDRAFT_97607 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E PUNSTDRAFT_110539 DNA repair exonuclease K10865 MRE11; double-strand break repair protein MRE11
E PUNSTDRAFT_97607 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E PUNSTDRAFT_117563 hypothetical protein K08775 BRCA2; breast cancer 2 susceptibility protein
D RecA family proteins
E PUNSTDRAFT_144104 hypothetical protein K10870 RAD51L2; RAD51-like protein 2
E PUNSTDRAFT_101755 P-loop containing nucleoside triphosphate hydrolase protein K10871 RAD51L3; RAD51-like protein 3
E PUNSTDRAFT_38523 hypothetical protein K10879 XRCC2; DNA-repair protein XRCC2
D Rad52 family proteins
D Rad54 family proteins
E PUNSTDRAFT_45729 SNF2 family domain-containing protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E PUNSTDRAFT_141784 hypothetical protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E PUNSTDRAFT_102659 ATP-dependent DNA helicase K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E PUNSTDRAFT_127035 P-loop containing nucleoside triphosphate hydrolase protein K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E PUNSTDRAFT_62636 prokaryotic type I DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
D RPA (replication factor A)
E PUNSTDRAFT_104588 replication factor-a protein K07466 RFA1; replication factor A1
E PUNSTDRAFT_114758 hypothetical protein K10739 RFA2; replication factor A2
D Protein phosphatase 4
E PUNSTDRAFT_119887 serine/threonine protein phosphatase K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E PUNSTDRAFT_70587 ARM repeat-containing protein K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1
E PUNSTDRAFT_71551 hypothetical protein K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E PUNSTDRAFT_43757 DUF625-domain-containing protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E PUNSTDRAFT_65776 P-loop containing nucleoside triphosphate hydrolase protein K22803 SMC5; structural maintenance of chromosomes protein 5
E PUNSTDRAFT_118332 P-loop containing nucleoside triphosphate hydrolase protein K22804 SMC6; structural maintenance of chromosomes protein 6
E PUNSTDRAFT_60755 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E PUNSTDRAFT_62925 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E PUNSTDRAFT_48565 ribonuclease H-like protein K20777 EXD2; exonuclease 3'-5' domain-containing protein 2 [EC:3.1.11.1]
E PUNSTDRAFT_86232 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E PUNSTDRAFT_129905 hypothetical protein K10991 SWI5; DNA repair protein Swi5/Sae3
E PUNSTDRAFT_81028 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E PUNSTDRAFT_115784 PIN domain-like protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E PUNSTDRAFT_118542 MRG-domain-containing protein K11339 MORF4L1; mortality factor 4-like protein 1
E PUNSTDRAFT_93060 HD-domain/PDEase-like protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E PUNSTDRAFT_62494 hypothetical protein K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E PUNSTDRAFT_49211 WLM-domain-containing protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E PUNSTDRAFT_133464 WLM-domain-containing protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E PUNSTDRAFT_143163 WLM-domain-containing protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E PUNSTDRAFT_115125 Ku DNA-binding complex Ku70 subunit K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E PUNSTDRAFT_78817 ku80-like protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E PUNSTDRAFT_110539 DNA repair exonuclease K10865 MRE11; double-strand break repair protein MRE11
E PUNSTDRAFT_97607 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E PUNSTDRAFT_120001 ATP-dependent DNA ligase K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E PUNSTDRAFT_35191 DNA ligase/mRNA capping enzyme K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E PUNSTDRAFT_141226 Nucleotidyltransferase K02330 POLB; DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E PUNSTDRAFT_114838 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E PUNSTDRAFT_28176 HIT-like protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E PUNSTDRAFT_141568 hypothetical protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
E PUNSTDRAFT_92315 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
E PUNSTDRAFT_62636 prokaryotic type I DNA topoisomerase K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
D FANCD2-I complex
D Downstream FA components
E PUNSTDRAFT_117563 hypothetical protein K08775 BRCA2; breast cancer 2 susceptibility protein
D Other FA pathway factors
E PUNSTDRAFT_144104 hypothetical protein K10870 RAD51L2; RAD51-like protein 2
E PUNSTDRAFT_126727 hypothetical protein K11137 TELO2; telomere length regulation protein
E PUNSTDRAFT_93230 WD40 repeat-like protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E PUNSTDRAFT_106658 Metallo-dependent phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
D Ubiquitin ligases
D Others
E PUNSTDRAFT_146018 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E PUNSTDRAFT_56950 transcription factor K24752 WDR70; WD repeat-containing protein 70
E PUNSTDRAFT_121470 WD40 repeat-like protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D PUNSTDRAFT_66822 DNA/RNA polymerase K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D PUNSTDRAFT_131827 IMS-domain-containing protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D PUNSTDRAFT_135458 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D PUNSTDRAFT_117429 hypothetical protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D PUNSTDRAFT_96290 ubiquitin-conjugating enzyme K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D PUNSTDRAFT_69405 hypothetical protein K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D PUNSTDRAFT_140280 DNA repair protein RAD5 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D PUNSTDRAFT_111629 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D PUNSTDRAFT_95600 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D PUNSTDRAFT_119956 UBC-like protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D PUNSTDRAFT_55435 ubiquitin-conjugating enzyme K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D PUNSTDRAFT_68708 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D PUNSTDRAFT_57472 hypothetical protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D PUNSTDRAFT_133340 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D PUNSTDRAFT_102214 cell cycle checkpoint K10903 HUS1; HUS1 checkpoint protein
D PUNSTDRAFT_104199 Rad1-domain-containing protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D PUNSTDRAFT_92629 P-loop containing nucleoside triphosphate hydrolase protein K06662 HRAD17; cell cycle checkpoint protein
D PUNSTDRAFT_140408 P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
D PUNSTDRAFT_77897 P-loop containing nucleoside triphosphate hydrolase protein K10755 RFC2_4; replication factor C subunit 2/4
D PUNSTDRAFT_93526 P-loop containing nucleoside triphosphate hydrolase protein K10756 RFC3_5; replication factor C subunit 3/5
D PUNSTDRAFT_133307 P-loop containing nucleoside triphosphate hydrolase protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D PUNSTDRAFT_104199 Rad1-domain-containing protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D PUNSTDRAFT_59023 timeless-domain-containing protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D PUNSTDRAFT_144823 Swi3-domain-containing protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D PUNSTDRAFT_142488 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D PUNSTDRAFT_126727 hypothetical protein K11137 TELO2; telomere length regulation protein
D PUNSTDRAFT_110095 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D PUNSTDRAFT_113799 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D PUNSTDRAFT_108788 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D PUNSTDRAFT_63830 hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D PUNSTDRAFT_101425 hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D PUNSTDRAFT_107114 CAMK/CAMKL/CHK1 protein kinase K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D PUNSTDRAFT_144517 hypothetical protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D PUNSTDRAFT_65457 14-3-3 1 protein K06630 YWHAE; 14-3-3 protein epsilon
D PUNSTDRAFT_63313 Pkinase-domain-containing protein K02831 RAD53; ser/thr/tyr protein kinase RAD53 [EC:2.7.11.-]
D PUNSTDRAFT_133660 kinase-like protein K02831 RAD53; ser/thr/tyr protein kinase RAD53 [EC:2.7.11.-]
D PUNSTDRAFT_140961 hypothetical protein K20780 MDC1; mediator of DNA damage checkpoint protein 1
D PUNSTDRAFT_131444 hypothetical protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D PUNSTDRAFT_109464 AAA-domain-containing protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D PUNSTDRAFT_101822 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D PUNSTDRAFT_70289 hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D PUNSTDRAFT_113037 DRMBL-domain-containing protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D PUNSTDRAFT_122855 hypothetical protein K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D PUNSTDRAFT_127659 nuclease Le1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D PUNSTDRAFT_143639 phospholipase C/P1 nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D PUNSTDRAFT_50545 nuclease PA3 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D PUNSTDRAFT_145742 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D PUNSTDRAFT_78919 WD40 repeat-like protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D PUNSTDRAFT_70360 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D PUNSTDRAFT_94781 breast carcinoma amplified sequence 2 K12861 BCAS2; pre-mRNA-splicing factor SPF27
D PUNSTDRAFT_115301 WD40 repeat-like protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D PUNSTDRAFT_52383 hypothetical protein K17816 NUDT1; 8-oxo-dGTP diphosphatase / 2-hydroxy-dATP diphosphatase [EC:3.6.1.55 3.6.1.56]
D PUNSTDRAFT_39703 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PUNSTDRAFT_107092 hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D PUNSTDRAFT_60855 ribonucleotide reductase alpha subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D PUNSTDRAFT_65344 beta subunit of ribonucleotide reductase K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D PUNSTDRAFT_119399 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E PUNSTDRAFT_69726 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PUNSTDRAFT_116854 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E PUNSTDRAFT_63214 DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E PUNSTDRAFT_102366 DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E PUNSTDRAFT_94537 AtMMH-1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E PUNSTDRAFT_70295 DNA glycosylase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E PUNSTDRAFT_100556 DNA glycosylase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E PUNSTDRAFT_65199 UvrD-helicase-domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E PUNSTDRAFT_65199 UvrD-helicase-domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D PUNSTDRAFT_39703 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024