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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Pseudomonas sp. RU47</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
D      Pol II specific subunits
D      Pol I, II, III common subunits
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
D      TFIIB
D      TFIID
D      TFIIE
D      TFIIF
D      TFIIH
E        CCX46_14060 ATP-dependent DNA helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
C    Mediator complex
D      Head
D      Middle
D      Tail
D      CDK-module
D      Other mediators
C    Coactivators
D      SAGA/TFTC/STAGA complex
D      BAF/PBAF complex
D      SWI/SNF complex
D      RSC complex
D      Others
C    Other transcription-related factors
D      Transcription elongation factors
D      Transcription termination factor
D      PAF1 complex
D      NELF complex
D      Super elongation complex (SEC)
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
D      DBIRD complex
D      Others
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
D      Pol III specific subunits
D      Pol I, II, III common subunits
C    Basal transcription factors
D      TFIIIA
D      TFIIIB
D      TFIIIC
D      TFIIIC, fungi type
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
D      Octamer transcription factors
D      Others
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
D      Pol I specific subunits
D      Pol I, II, III common subunits
C    Basal transcription factors
D      SL1/TIF-1B
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
D      Transcription elongation factors
D      NoRC (nucleolar remodeling complex)
D      CTDK-I complex
D      Transcription termination factors
D      Others
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A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
E        CCX46_26745 DNA-directed RNA polymerase subunit alpha	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        CCX46_26905 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
E        CCX46_26900 rpoC; (GenBank) DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
E        CCX46_29245 DNA-directed RNA polymerase subunit omega	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] 
D      Sigma factors
E        CCX46_27265 RNA polymerase sigma factor RpoD	K03086 rpoD; RNA polymerase primary sigma factor 
E        CCX46_05780 RNA polymerase sigma factor RpoS	K03087 rpoS; RNA polymerase nonessential primary-like sigma factor 
E        CCX46_00870 RNA polymerase subunit sigma	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily 
E        CCX46_06965 rpoE; (GenBank) RNA polymerase sigma factor RpoE	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily 
E        CCX46_07275 RNA polymerase subunit sigma-24	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily 
E        CCX46_09405 RNA polymerase subunit sigma	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily 
E        CCX46_19585 RNA polymerase subunit sigma	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily 
E        CCX46_22830 RNA polymerase subunit sigma-24	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily 
E        CCX46_27540 RNA polymerase subunit sigma-70	K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily 
E        CCX46_00665 RNA polymerase subunit sigma	K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily 
E        CCX46_04705 RNA polymerase subunit sigma	K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily 
E        CCX46_12055 RNA polymerase subunit sigma	K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily 
E        CCX46_12775 RNA polymerase subunit sigma	K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily 
E        CCX46_14510 RNA polymerase subunit sigma	K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily 
E        CCX46_15115 RNA polymerase subunit sigma	K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily 
E        CCX46_17680 RNA polymerase subunit sigma	K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily 
E        CCX46_22920 RNA polymerase subunit sigma	K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily 
E        CCX46_27470 RNA polymerase subunit sigma	K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily 
E        CCX46_28200 rpoH; (GenBank) RNA polymerase sigma factor RpoH	K03089 rpoH; RNA polymerase sigma-32 factor 
E        CCX46_04335 RNA polymerase factor sigma-54	K03092 rpoN; RNA polymerase sigma-54 factor 
E        CCX46_08015 fliA; (GenBank) RNA polymerase sigma factor FliA	K02405 fliA; RNA polymerase sigma factor FliA 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
E        CCX46_06455 RNA polymerase-binding ATPase	K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] 
E        CCX46_03940 nusA; (GenBank) transcription termination/antitermination protein NusA	K02600 nusA; transcription termination/antitermination protein NusA 
E        CCX46_26525 N utilization substance protein B	K03625 nusB; transcription antitermination protein NusB 
E        CCX46_26930 transcription termination/antitermination protein NusG	K02601 nusG; transcription termination/antitermination protein NusG 
E        CCX46_24745 stringent starvation protein A	K03599 sspA; stringent starvation protein A 
E        CCX46_24740 ClpXP protease specificity-enhancing factor	K03600 sspB; stringent starvation protein B 
E        CCX46_12725 anti-sigma regulatory factor	K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] 
E        CCX46_12730 anti-anti-sigma factor	K17762 rsbS; rsbT antagonist protein RsbS 
E        CCX46_12735 polyvinylalcohol dehydrogenase	K17763 rsbR; rsbT co-antagonist protein RsbR 
E        CCX46_06970 RNA polymerase subunit sigma	K03597 rseA; sigma-E factor negative regulatory protein RseA 
E        CCX46_06975 RNA polymerase subunit sigma	K03598 rseB; sigma-E factor negative regulatory protein RseB 
D      Transcription elongation factors
E        CCX46_11645 conjugal transfer protein TraR	K06204 dksA; RNA polymerase-binding transcription factor 
E        CCX46_25405 dksA; (GenBank) RNA polymerase-binding protein DksA	K06204 dksA; RNA polymerase-binding transcription factor 
E        CCX46_03880 transcription elongation factor GreA	K03624 greA; transcription elongation factor GreA 
E        CCX46_21025 greB; (GenBank) transcription elongation factor GreB	K04760 greB; transcription elongation factor GreB 
D      Transcription termination factor
E        CCX46_28775 rho; (GenBank) transcription termination factor Rho	K03628 rho; transcription termination factor Rho 
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
D      TFE
D      TFS
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#Last updated: April 17, 2025