+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudomonas syringae pv. tomato DC3000

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PSPTO_1121 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PSPTO_4236 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSPTO_4830 methylpurine-DNA glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PSPTO_5342 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSPTO_4149 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E PSPTO_3036 conserved hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PSPTO_4397 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSPTO_2696 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSPTO_0084 dut; deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PSPTO_3595 ada; Ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PSPTO_1121 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PSPTO_3689 conserved protein of unknown function K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D PSPTO_3118 alkB; DNA alkylation damage repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E PSPTO_4236 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSPTO_4830 methylpurine-DNA glycosylase family protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PSPTO_5342 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSPTO_0183 tag; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PSPTO_0414 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PSPTO_4149 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PSPTO_0079 exodeoxyribonuclease III, putative K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PSPTO_2747 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E PSPTO_1488 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PSPTO_3656 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSPTO_0382 DNA ligase, NAD-dependent, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PSPTO_0344 polI; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PSPTO_0654 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E PSPTO_2164 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E PSPTO_3023 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E PSPTO_5516 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSPTO_0344 polI; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E PSPTO_3656 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSPTO_0382 DNA ligase, NAD-dependent, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PSPTO_0619 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PSPTO_0620 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PSPTO_0651 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PSPTO_0074 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PSPTO_2101 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PSPTO_4058 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PSPTO_4944 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E PSPTO_4316 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PSPTO_1446 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PSPTO_0700 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PSPTO_1549 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PSPTO_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PSPTO_1270 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PSPTO_4814 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PSPTO_3826 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PSPTO_4665 exonuclease, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSPTO_3711 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSPTO_0470 exonuclease, putative K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSPTO_3646 dnaZX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PSPTO_3656 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSPTO_0382 DNA ligase, NAD-dependent, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PSPTO_5516 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSPTO_0656 ssB; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E PSPTO_3388 DNA adenine methylase, putative K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PSPTO_0777 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PSPTO_0776 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PSPTO_0778 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PSPTO_4033 recA; recA protein K03553 recA; recombination protein RecA E PSPTO_3978 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PSPTO_3977 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSPTO_3979 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PSPTO_5137 priA; primosomal protein N` K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PSPTO_4316 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PSPTO_3766 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PSPTO_3765 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PSPTO_4033 recA; recA protein K03553 recA; recombination protein RecA E PSPTO_4640 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E PSPTO_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E PSPTO_0065 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PSPTO_1488 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PSPTO_4215 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PSPTO_3638 recR; recombination protein RecR K06187 recR; recombination protein RecR E PSPTO_4507 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PSPTO_3897 recombination associated protein rdgC K03554 rdgC; recombination associated protein RdgC E PSPTO_3978 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PSPTO_3977 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSPTO_3979 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E PSPTO_3766 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PSPTO_3765 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E PSPTO_3465 KU domain protein K10979 ku; DNA end-binding protein Ku E PSPTO_3464 DNA ligase, ATP-dependent, putative K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PSPTO_1745 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PSPTO_0004 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PSPTO_3514 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F PSPTO_2976 DNA topoisomerase, type I, putative K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PSPTO_5472 DNA-binding protein HU family K05787 hupA; DNA-binding protein HU-alpha F PSPTO_3723 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta F PSPTO_1266 DNA-binding protein HU family K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PSPTO_1488 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PSPTO_4215 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PSPTO_3638 recR; recombination protein RecR K06187 recR; recombination protein RecR F PSPTO_3656 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F PSPTO_0382 DNA ligase, NAD-dependent, putative K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PSPTO_4865 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PSPTO_2384 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F PSPTO_1751 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F PSPTO_4316 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PSPTO_1644 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PSPTO_5409 ATP-dependent DNA helicase domain protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PSPTO_0654 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F PSPTO_2164 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PSPTO_3990 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PSPTO_0591 impB/mucB/samB family protein K03502 umuC; DNA polymerase V D PSPTO_2121 RulA protein, putative K03503 umuD; DNA polymerase V [EC:3.4.21.-] D PSPTO_A0002 rulA; ultraviolet light resistance protein A K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PSPTO_4033 recA; recA protein K03553 recA; recombination protein RecA D PSPTO_3510 lexA-2; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PSPTO_2792 lexA-1; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PSPTO_4507 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PSPTO_2621 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D PSPTO_2793 conserved hypothetical protein K14160 imuA; protein ImuA D PSPTO_2794 conserved hypothetical protein K14161 imuB; protein ImuB D PSPTO_2795 DNA polymerase III, alpha subunit, putative K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PSPTO_0656 ssB; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PSPTO_4032 recX; recX protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PSPTO_0113 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PSPTO_4120 ATP-dependent helicase, DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PSPTO_4141 helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D PSPTO_4397 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSPTO_2696 mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSPTO_0084 dut; deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PSPTO_1671 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PSPTO_1661 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024