+E Transcription factors KO
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Transcription Factors - Paenibacillus stellifer
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D PSTEL_12755 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D PSTEL_11790 transcriptional regulator K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D PSTEL_21880 AraC family transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D PSTEL_16875 AraC family transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D PSTEL_12895 hypothetical protein K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D PSTEL_21325 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D PSTEL_12735 transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D PSTEL_09355 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D PSTEL_16910 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D PSTEL_14195 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D PSTEL_01745 AraC family transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D PSTEL_11070 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D PSTEL_04285 transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D PSTEL_10390 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D PSTEL_21890 transcriptional regulator K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon
D PSTEL_13790 transcriptional regulator K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon
C DeoR family
D PSTEL_18810 glucitol operon repressor K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D PSTEL_22625 DeoR faimly transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D PSTEL_06635 DeoR faimly transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D PSTEL_25170 stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D PSTEL_06290 histidine kinase K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D PSTEL_23525 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_08410 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_08705 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_04695 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_20265 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_21305 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_06355 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_26600 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_12230 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_07695 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_12920 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_07765 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PSTEL_20125 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D PSTEL_01985 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D PSTEL_26010 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D PSTEL_01190 LacI family transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D PSTEL_19975 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D PSTEL_26510 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D PSTEL_24780 hypothetical protein K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator
D PSTEL_23680 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PSTEL_10570 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PSTEL_25620 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PSTEL_21470 hypothetical protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PSTEL_05625 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D PSTEL_13570 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PSTEL_02940 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PSTEL_15005 transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
C Lrp/AsnC family
D PSTEL_23605 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PSTEL_06775 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PSTEL_14045 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PSTEL_16995 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D PSTEL_21065 LuxR family transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
D PSTEL_03575 hypothetical protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D PSTEL_03290 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D PSTEL_25840 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D PSTEL_21915 MarR family transcriptional regulator K18909 mepR; MarR family transcriptional regulator, repressor for mepA
D PSTEL_03490 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D PSTEL_01875 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D PSTEL_16515 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D PSTEL_15710 transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D PSTEL_11080 transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D PSTEL_10550 hypothetical protein K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D PSTEL_03885 hypothetical protein K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D PSTEL_18000 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PSTEL_12740 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PSTEL_18405 Fur family transcriptional regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D PSTEL_25520 Fur family transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D PSTEL_22950 peptide ABC transporter substrate-binding protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D PSTEL_18560 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PSTEL_22780 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PSTEL_25985 hypothetical protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D PSTEL_20210 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D PSTEL_05665 Rrf2 family transcriptional regulator K19587 oqxR; Rrf2 family transcriptional regulator, repressor of oqxAB
C ArsR family
D PSTEL_14030 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PSTEL_14430 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PSTEL_14280 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PSTEL_05210 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PSTEL_02370 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D PSTEL_14495 hypothetical protein K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D PSTEL_23035 hypothetical protein K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
D PSTEL_02255 transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D PSTEL_05360 transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
C PadR family
D PSTEL_12980 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D PSTEL_18370 manganese transport transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D PSTEL_01180 hypothetical protein K11925 sgrR; SgrR family transcriptional regulator
D PSTEL_11670 ABC transporter substrate-binding protein K11925 sgrR; SgrR family transcriptional regulator
D PSTEL_26535 cytidyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D PSTEL_22590 transcriptional regulator K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D PSTEL_00190 purine operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D PSTEL_10730 hypothetical protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PSTEL_17320 REX family transcriptional regulator K01926 rex; redox-sensing transcriptional repressor
D PSTEL_15760 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D PSTEL_04430 DNA-binding protein K07729 K07729; putative transcriptional regulator
D PSTEL_05300 Cro/Cl family transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D PSTEL_06510 antitoxin K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D PSTEL_16710 levansucrase K26931 sacY; levansucrase and sucrase synthesis operon transcriptional antiterminator
D PSTEL_08885 PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator
C Others
D PSTEL_14905 cytosolic protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D PSTEL_02280 CsoR family transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D PSTEL_07570 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D PSTEL_25725 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D PSTEL_09890 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D PSTEL_00140 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D PSTEL_09235 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D PSTEL_00235 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D PSTEL_04750 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PSTEL_26875 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PSTEL_26885 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PSTEL_14295 antiterminator K02443 glpP; glycerol uptake operon antiterminator
D PSTEL_18195 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D PSTEL_20040 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D PSTEL_24300 transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D PSTEL_01645 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D PSTEL_11235 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D PSTEL_07690 hypothetical protein K03973 pspC; phage shock protein C
D PSTEL_22765 hypothetical protein K03973 pspC; phage shock protein C
D PSTEL_01250 central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D PSTEL_17540 hypothetical protein K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D PSTEL_19345 uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PSTEL_19565 precorrin-3B C17-methyltransferase K06314 rsfA; prespore-specific regulator
D PSTEL_10160 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D PSTEL_19515 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0