+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pantoea stewartii subsp. stewartii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DSJ_08415 glycosyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DSJ_08245 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E DSJ_07070 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DSJ_04555 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DSJ_13270 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DSJ_06290 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DSJ_02420 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DSJ_08415 glycosyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D DSJ_08245 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D DSJ_16875 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E DSJ_07070 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DSJ_20610 double-stranded uracil-DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E DSJ_08410 adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E DSJ_04555 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DSJ_00110 DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DSJ_02445 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E DSJ_08285 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E DSJ_13270 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DSJ_14760 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E DSJ_16400 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E DSJ_01895 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E DSJ_04850 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E DSJ_18320 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E DSJ_00250 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E DSJ_02895 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E DSJ_08565 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E DSJ_10325 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E DSJ_12785 endonuclease K05984 cho; excinuclease Cho [EC:3.1.25.-] E DSJ_22065 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DSJ_00250 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E DSJ_18320 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DSJ_01940 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F DSJ_01935 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F DSJ_00390 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F DSJ_00165 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F DSJ_10760 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DSJ_05325 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E DSJ_21620 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E DSJ_04915 DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E DSJ_15795 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E DSJ_07580 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E DSJ_19245 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E DSJ_17935 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] E DSJ_15190 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E DSJ_06715 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DSJ_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DSJ_04255 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E DSJ_08035 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DSJ_10695 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DSJ_19390 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E DSJ_19000 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E DSJ_04445 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E DSJ_24030 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] E DSJ_15185 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E DSJ_18320 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E DSJ_22065 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DSJ_23195 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DSJ_02890 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein E DSJ_12025 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein E DSJ_22770 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DSJ_17945 hypothetical protein K03111 ssb; single-strand DNA-binding protein E DSJ_17950 DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E DSJ_09095 restriction endonuclease subunit M K06223 dam; DNA adenine methylase [EC:2.1.1.72] E DSJ_13730 modification methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E DSJ_22905 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E DSJ_18785 adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E DSJ_00930 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E DSJ_11850 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DSJ_04970 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E DSJ_04960 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E DSJ_04975 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E DSJ_05350 recombinase RecA K03553 recA; recombination protein RecA E DSJ_15280 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DSJ_15275 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DSJ_15285 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E DSJ_12145 Holliday junction resolvase K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E DSJ_16680 crossover junction endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E DSJ_02715 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E DSJ_21540 primosomal replication protein N K02686 priB; primosomal replication protein N E DSJ_19015 PriC K04067 priC; primosomal replication protein N'' E DSJ_00100 primosomal protein DnaI K02317 dnaT; DNA replication protein DnaT E DSJ_15795 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E DSJ_05690 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E DSJ_05685 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E DSJ_05350 recombinase RecA K03553 recA; recombination protein RecA E DSJ_04470 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E DSJ_00015 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF E DSJ_00180 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DSJ_04850 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DSJ_07135 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E DSJ_18990 recombination protein RecR K06187 recR; recombination protein RecR E DSJ_07055 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E DSJ_05705 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E DSJ_15280 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DSJ_15275 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DSJ_15285 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E DSJ_16480 ATP-dependent helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E DSJ_05690 ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E DSJ_05685 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DSJ_16955 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DSJ_00020 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DSJ_14505 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F DSJ_01885 DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F DSJ_19155 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DSJ_05560 recombinase RecT K07455 recT; recombination protein RecT F DSJ_04850 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DSJ_07135 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F DSJ_18990 recombination protein RecR K06187 recR; recombination protein RecR F DSJ_18320 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F DSJ_21815 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F DSJ_12885 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F DSJ_09555 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F DSJ_15795 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F DSJ_22015 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DSJ_02895 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F DSJ_08565 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F DSJ_14710 transcriptional regulator K03746 hns; DNA-binding protein H-NS F DSJ_25640 DNA-binding protein K03746 hns; DNA-binding protein H-NS F DSJ_09205 DNA-binding protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DSJ_19615 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DSJ_24325 DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D DSJ_19340 phage repressor protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D DSJ_16510 phage repressor protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D DSJ_10285 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D DSJ_12345 phage repressor protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D DSJ_24320 protein impA K03503 umuD; DNA polymerase V [EC:3.4.21.-] D DSJ_26415 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D DSJ_05350 recombinase RecA K03553 recA; recombination protein RecA D DSJ_18650 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D DSJ_03075 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D DSJ_07055 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DSJ_06110 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D DSJ_23195 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DSJ_02890 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D DSJ_12025 ssDNA-binding protein K03111 ssb; single-strand DNA-binding protein D DSJ_22770 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DSJ_17945 hypothetical protein K03111 ssb; single-strand DNA-binding protein D DSJ_10495 DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D DSJ_10280 damage-inducible protein DinI K12149 dinI; DNA-damage-inducible protein I D DSJ_05355 recombination regulator RecX K03565 recX; regulatory protein D DSJ_23070 hypothetical protein K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D DSJ_22225 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D DSJ_09770 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D DSJ_14940 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D DSJ_08925 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D DSJ_06290 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DSJ_02420 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DSJ_16965 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D DSJ_06900 class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D DSJ_16970 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024