+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Pseudoliparis swirei (Mariana hadal snailfish)

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs D 130206057 fbl; rRNA 2'-O-methyltransferase fibrillarin K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-] D 130191278 nop56; nucleolar protein 56 isoform X1 K14564 NOP56; nucleolar protein 56 D 130204430 nop58; nucleolar protein 58 K14565 NOP58; nucleolar protein 58 D 130203602 LOW QUALITY PROTEIN: NHP2-like protein 1 K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13 D 130203634 snu13b; SNU13 homolog, small nuclear ribonucleoprotein b (U4/U6.U5) K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13 D 130193991 znhit6; box C/D snoRNA protein 1 isoform X1 K27833 ZNHIT6; box C/D snoRNA protein 1 C Box H/ACA snoRNPs D 130201409 dkc1; H/ACA ribonucleoprotein complex subunit DKC1 isoform X1 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D 130209854 gar1; H/ACA ribonucleoprotein complex subunit 1 isoform X1 K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1 D 130190041 nhp2; H/ACA ribonucleoprotein complex subunit 2-like protein K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2 D 130211570 nop10; H/ACA ribonucleoprotein complex subunit 3 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D 130189461 naf1; H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform X1 K14763 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1 D 130208635 shq1; protein SHQ1 homolog K14764 SHQ1; protein SHQ1 B 90S particles C U3 small nucleolar RNA-associated proteins D 130198024 imp3; U3 small nucleolar ribonucleoprotein protein IMP3 K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 D 130192631 imp4; U3 small nucleolar ribonucleoprotein protein IMP4 K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 D 130192830 mphosph10; U3 small nucleolar ribonucleoprotein protein MPP10 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10 D 130206183 ngdn; neuroguidin K14765 NGDN; U3 small nucleolar ribonucleoprotein protein LCP5 D 130188294 rrp7a; ribosomal RNA-processing protein 7 homolog A K14545 RRP7; ribosomal RNA-processing protein 7 D 130204418 pwp2h; PWP2 small subunit processome component K14558 PWP2; periodic tryptophan protein 2 D 130205743 nop14; nucleolar protein 14 K14766 NOP14; nucleolar protein 14 D 130208904 utp3; something about silencing protein 10 isoform X1 K14767 UTP3; U3 small nucleolar RNA-associated protein 3 D 130195749 utp4; U3 small nucleolar RNA-associated protein 4 homolog K14548 UTP4; U3 small nucleolar RNA-associated protein 4 D 130201854 wdr43; WD repeat-containing protein 43 isoform X1 K14546 UTP5; U3 small nucleolar RNA-associated protein 5 D 130189854 utp6; U3 small nucleolar RNA-associated protein 6 homolog K14557 UTP6; U3 small nucleolar RNA-associated protein 6 D 130199930 wdr46; WD repeat-containing protein 46 K14768 UTP7; U3 small nucleolar RNA-associated protein 7 D 130204014 heatr1; HEAT repeat-containing protein 1 K14550 UTP10; U3 small nucleolar RNA-associated protein 10 D 130213053 utp11; probable U3 small nucleolar RNA-associated protein 11 K14769 UTP11; U3 small nucleolar RNA-associated protein 11 D 130205978 wdr3; WD repeat-containing protein 3 K14556 DIP2; U3 small nucleolar RNA-associated protein 12 D 130189159 tbl3; transducin beta-like protein 3 K14555 UTP13; U3 small nucleolar RNA-associated protein 13 D 130200216 si:dkey-251i10.3; U3 small nucleolar RNA-associated protein 14 homolog A K14567 UTP14; U3 small nucleolar RNA-associated protein 14 D 130196901 utp15; U3 small nucleolar RNA-associated protein 15 homolog K14549 UTP15; U3 small nucleolar RNA-associated protein 15 D 130197568 nol7; nucleolar protein 7 K27687 NOL7; U3 small nucleolar RNA-associated protein NOL7 D 130200870 wdr75; WD repeat-containing protein 75 K14552 NAN1; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17) D 130188146 utp18; U3 small nucleolar RNA-associated protein 18 homolog K14553 UTP18; U3 small nucleolar RNA-associated protein 18 D 130205084 noc4l; nucleolar complex protein 4 homolog K14771 NOC4; U3 small nucleolar RNA-associated protein 19 D 130200612 utp20; small subunit processome component 20 homolog isoform X1 K14772 UTP20; U3 small nucleolar RNA-associated protein 20 D 130205162 wdr36; WD repeat-containing protein 36 K14554 UTP21; U3 small nucleolar RNA-associated protein 21 D 130196975 nucleolar protein 6-like K14544 UTP22; U3 small nucleolar RNA-associated protein 22 D 130197230 utp23; rRNA-processing protein UTP23 homolog K14773 UTP23; U3 small nucleolar RNA-associated protein 23 D 130201782 fcf1; rRNA-processing protein FCF1 homolog isoform X1 K14566 UTP24; U3 small nucleolar RNA-associated protein 24 D 130201015 utp25; U3 small nucleolar RNA-associated protein 25 homolog K14774 UTP25; U3 small nucleolar RNA-associated protein 25 D 130203511 rsl1d1; ribosomal L1 domain-containing protein 1 K14775 UTP30; ribosome biogenesis protein UTP30 C Helicases D 130193647 ddx10; probable ATP-dependent RNA helicase DDX10 K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7] D 130201065 ddx18; ATP-dependent RNA helicase DDX18 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7] D 130188897 ddx47; probable ATP-dependent RNA helicase DDX47 K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7] D 130193609 ddx49; probable ATP-dependent RNA helicase DDX49 K14778 DDX49; ATP-dependent RNA helicase DDX49/DBP8 [EC:5.6.2.7] D 130188863 ddx52; probable ATP-dependent RNA helicase DDX52 K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7] D 130189811 LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX15-like K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6] D 130211501 dhx15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1 K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6] D 130196985 dhx37; probable ATP-dependent RNA helicase DHX37 isoform X1 K14780 DHX37; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6] C GTPase D 130203836 bms1; ribosome biogenesis protein BMS1 homolog K14569 BMS1; ribosome biogenesis protein BMS1 C RNase D 130205955 drosha; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3] D 130203492 rexo4; RNA exonuclease 4 K18327 REXO4; RNA exonuclease 4 [EC:3.1.-.-] D 130209219 dbr1; lariat debranching enzyme K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-] C Kinase D 130193035 csnk2a2a; casein kinase 2, alpha prime polypeptide a K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] D 130212902 casein kinase II subunit alpha isoform X1 K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] D 130208098 csnk2a4; casein kinase II subunit alpha K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] D 130192243 csnk2b; casein kinase II subunit beta K03115 CSNK2B; casein kinase II subunit beta D 130188027 casein kinase II subunit beta-like isoform X1 K03115 CSNK2B; casein kinase II subunit beta C Other 90S particles D 130193586 protein AATF-like K14782 AATF; protein AATF/BFR2 D 130194248 LOW QUALITY PROTEIN: protein AATF-like K14782 AATF; protein AATF/BFR2 D 130200177 cmss1; protein CMSS1 isoform X1 K14784 CMS1; protein CMS1 D 130213483 emg1; ribosomal RNA small subunit methyltransferase NEP1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D 130199920 abt1; activator of basal transcription 1 isoform X1 K14785 ESF2; ESF2/ABP1 family protein D 130188978 kri1; protein KRI1 homolog K14786 KRI1; protein KRI1 D 130191126 krr1; KRR1 small subunit processome component homolog K06961 KRR1; ribosomal RNA assembly protein D 130196498 rbm19; probable RNA-binding protein 19 K14787 MRD1; multiple RNA-binding domain-containing protein 1 D 130195172 nat10; RNA cytidine acetyltransferase K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-] D 130193761 ncl; nucleolin K11294 NCL; nucleolin D 130197887 nucleolin-like isoform X1 K11294 NCL; nucleolin D 130197962 nucleolin-like K11294 NCL; nucleolin D 130201502 nol10; nucleolar protein 10 K14788 NOL10; ribosome biogenesis protein ENP2 D 130198596 nucleolar protein 9 isoform X1 K14790 NOP9; nucleolar protein 9 D 130202817 pinx1; PIN2/TERF1-interacting telomerase inhibitor 1 K11135 PINX1; Pin2-interacting protein X1 D 130200658 pwp1; periodic tryptophan protein 1 homolog K14791 PWP1; periodic tryptophan protein 1 D 130205565 rcl1; RNA 3'-terminal phosphate cyclase-like protein K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein D 130189911 pdcd11; protein RRP5 homolog K14792 RRP5; rRNA biogenesis protein RRP5 D 130191502 rrp9; U3 small nucleolar RNA-interacting protein 2 K14793 RRP9; ribosomal RNA-processing protein 9 D 130206797 rrp12; RRP12-like protein isoform X1 K14794 RRP12; ribosomal RNA-processing protein 12 D 130190222 rrp36; ribosomal RNA processing protein 36 homolog K14795 RRP36; ribosomal RNA-processing protein 36 D 130212963 dcaf13; DDB1- and CUL4-associated factor 13 K11806 DCAF13; DDB1- and CUL4-associated factor 13 B Pre-40S particles C Kinases D 130190919 riok1; serine/threonine-protein kinase RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D 130196540 riok2; serine/threonine-protein kinase RIO2 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] C Export and cytoplasmic maturation factors D 130196304 dimt1l; probable dimethyladenosine transferase K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] D 130210326 bud23; probable 18S rRNA (guanine-N(7))-methyltransferase K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309] D 130199781 mettl5; rRNA N6-adenosine-methyltransferase METTL5 isoform X1 K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5 D 130208133 bysl; bystin isoform X1 K14797 ENP1; essential nuclear protein 1 D 130189547 ltv1; protein LTV1 homolog K14798 LTV1; protein LTV1 D 130192173 nob1; RNA-binding protein NOB1 isoform X1 K11883 NOB1; RNA-binding protein NOB1 D 130207320 pno1; RNA-binding protein PNO1 K11884 PNO1; RNA-binding protein PNO1 D 130209573 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran D 130196720 ak6; adenylate kinase isoenzyme 6 K18532 AK6; adenylate kinase [EC:2.7.4.3] D 130210299 tsr1; pre-rRNA-processing protein TSR1 homolog K14799 TSR1; pre-rRNA-processing protein TSR1 D 130200191 tsr2; pre-rRNA-processing protein TSR2 homolog K14800 TSR2; pre-rRNA-processing protein TSR2 D 130203230 tsr3; ribosome biogenesis protein TSR3 homolog isoform X1 K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] D 130192785 pdcd2; programmed cell death protein 2 isoform X1 K14801 TSR4; pre-rRNA-processing protein TSR4 D 130195274 pdcd2l; programmed cell death protein 2-like isoform X1 K14801 TSR4; pre-rRNA-processing protein TSR4 D 130190113 rps19bp1; ribosomal protein S19 binding protein 1 K26536 RPS19BP1; active regulator of SIRT1 D 130191410 xpo1a; exportin-1 K14290 XPO1; exportin-1 D 130207487 xpo1b; exportin-1 K14290 XPO1; exportin-1 D 130188140 kpnb1; importin subunit beta-1 isoform X1 K14293 KPNB1; importin subunit beta-1 D 130205436 tnpo1; transportin-1 isoform X1 K18752 TNPO1; transportin-1 D 130206387 ipo4; importin-4 K20221 IPO4; importin-4 D 130204403 kpnb3; importin-5 K20222 IPO5; importin-5 D 130192404 ipo7; importin-7 isoform X1 K20223 IPO7; importin-7 D 130207766 ipo9; importin-9 K20224 IPO9; importin-9 C Other pre-40S particles D 130206716 atp8a2; phospholipid-transporting ATPase IB isoform X1 K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1] D 130209206 atp8a1; phospholipid-transporting ATPase IA isoform X1 K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1] D 130192757 eif3jb; eukaryotic translation initiation factor 3 subunit J-B K03245 EIF3J; translation initiation factor 3 subunit J D 130212211 abce1; ATP-binding cassette sub-family E member 1 isoform X1 K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 B Pre-60S particles C Helicases D 130190543 probable ATP-dependent RNA helicase DDX5 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7] D 130189034 ddx5; probable ATP-dependent RNA helicase DDX5 isoform X1 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7] D 130201065 ddx18; ATP-dependent RNA helicase DDX18 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7] D 130192917 ddx21; nucleolar RNA helicase 2 K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7] D 130201215 ddx24; ATP-dependent RNA helicase DDX24 K14805 DDX24; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7] D 130196764 ddx31; probable ATP-dependent RNA helicase DDX31 K14806 DDX31; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7] D 130202456 ddx51; ATP-dependent RNA helicase DDX51 K14807 DDX51; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7] D 130205146 ddx54; ATP-dependent RNA helicase DDX54 K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7] D 130205611 ddx55; ATP-dependent RNA helicase DDX55 K14809 DDX55; ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7] D 130204866 ddx56; probable ATP-dependent RNA helicase DDX56 K14810 DDX56; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7] D 130205431 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] C GTPases D 130208012 gnl3; guanine nucleotide-binding protein-like 3 K14538 NUG1; nuclear GTP-binding protein D 130208934 gnl3l; guanine nucleotide-binding protein-like 3-like protein K14538 NUG1; nuclear GTP-binding protein D 130213364 gnl2; nucleolar GTP-binding protein 2 K14537 NUG2; nuclear GTP-binding protein D 130198518 gtpbp4; nucleolar GTP-binding protein 1 K06943 NOG1; nucleolar GTP-binding protein D 130193778 lsg1; LOW QUALITY PROTEIN: large subunit GTPase 1 homolog K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-] D 130193206 efl1; elongation factor-like GTPase 1 isoform X1 K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-] C RNases D 130210839 smfn; small fragment nuclease isoform X1 K13288 orn; oligoribonuclease [EC:3.1.-.-] D 130196349 RNA exonuclease 1 homolog K14570 REX1; RNA exonuclease [EC:3.1.-.-] D 130194252 rexo1; LOW QUALITY PROTEIN: RNA exonuclease 1 homolog K14570 REX1; RNA exonuclease [EC:3.1.-.-] D 130190102 RNA exonuclease 5-like isoform X1 K14570 REX1; RNA exonuclease [EC:3.1.-.-] D 130197823 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] D 130202151 xrn2; LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] D RNase MRP E 130206256 pop1; ribonucleases P/MRP protein subunit POP1 isoform X1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5] E 130192442 ribonuclease P protein subunit p29-like K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] E 130192443 ribonuclease P protein subunit p29-like K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] E 130196887 pop5; ribonuclease P/MRP protein subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] E 130203165 rpp30; ribonuclease P protein subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] E 130211730 pop7; ribonuclease P protein subunit p20 K14527 RPP20; ribonuclease P/MRP protein subunit RPP20 [EC:3.1.26.5] E 130192773 ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5] E 130194968 ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5] E 130213092 rpp25l; ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5] E 130188004 rpp38; ribonuclease P protein subunit p38 K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5] E 130190927 rpp40; ribonuclease P protein subunit p40 K14530 RPP40; ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5] C Kinases D 130199651 nol9; polynucleotide 5'-hydroxyl-kinase NOL9 K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] C Export and cytoplasmic maturation factors D 130206706 ATP-binding cassette sub-family F member 2-like K06185 ABCF2; ATP-binding cassette, subfamily F, member 2 D 130205301 dnajc21; dnaJ homolog subfamily C member 21 isoform X1 K09506 DNAJA5; DnaJ homolog subfamily A member 5 D 130191524 eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D 130208243 eif6; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D 130192048 hspa8; heat shock cognate 71 kDa protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D 130192351 heat shock 70 kDa protein 1 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D 130188662 heat shock 70 kDa protein 1-like K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D 130213322 hsc70; heat shock cognate 71 kDa protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D 130210285 heat shock cognate 70 kDa protein-like K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8 D 130208902 mrto4; mRNA turnover protein 4 homolog K14815 MRT4; mRNA turnover protein 4 D 130211180 nmd3; 60S ribosomal export protein NMD3 K07562 NMD3; 60S ribosomal export protein NMD3 D 130209342 nxf1a; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor D 130209604 nxt2; NTF2-related export protein 2 isoform X1 K14285 NXT1_2; NTF2-related export protein 1/2 D 130209573 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran D 130197563 znf622; cytoplasmic 60S subunit biogenesis factor ZNF622 K14816 REI1; pre-60S factor REI1 D 130210562 sbds; ribosome maturation protein SBDS K14574 SDO1; ribosome maturation protein SDO1 D 130209458 afg2a; ribosome biogenesis protein SPATA5 K14575 AFG2; AAA family ATPase D 130193134 afg2b; spermatogenesis-associated protein 5-like protein 1 isoform X1 K26051 SPATA5L1; ribosome biogenesis protein SPATA5L1 [EC:3.6.4.10] D 130201338 cinp; cyclin-dependent kinase 2-interacting protein K26052 CINP; cyclin-dependent kinase 2-interacting protein D 130192350 c19h1orf109; ribosome biogenesis protein C1orf109 homolog K26053 C1ORF109; ribosome biogenesis protein C1orf109 D 130191410 xpo1a; exportin-1 K14290 XPO1; exportin-1 D 130207487 xpo1b; exportin-1 K14290 XPO1; exportin-1 D 130188140 kpnb1; importin subunit beta-1 isoform X1 K14293 KPNB1; importin subunit beta-1 D 130205436 tnpo1; transportin-1 isoform X1 K18752 TNPO1; transportin-1 D 130206387 ipo4; importin-4 K20221 IPO4; importin-4 D 130204403 kpnb3; importin-5 K20222 IPO5; importin-5 D 130192404 ipo7; importin-7 isoform X1 K20223 IPO7; importin-7 D 130207766 ipo9; importin-9 K20224 IPO9; importin-9 D 130198169 dusp12; dual specificity protein phosphatase 12 isoform X1 K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48] C 5-FMC complex D 130212794 tex10; testis-expressed protein 10 homolog K14827 IPI1; pre-rRNA-processing protein IPI1 D 130191092 wdr18; WD repeat-containing protein 18 K14829 IPI3; pre-rRNA-processing protein IPI3 D 130199298 las1l; ribosomal biogenesis protein LAS1L K16912 LAS1; ribosomal biogenesis protein LAS1 D 130212058 pelp1; proline-, glutamic acid- and leucine-rich protein 1 isoform X1 K16913 PELP1; proline-, glutamic acid- and leucine-rich protein 1 D 130211618 senp3b; sentrin-specific protease 3b K08593 SENP3; sentrin-specific protease 3 [EC:3.4.22.68] C Ribosome quality control proteins D 130210206 ltn1; E3 ubiquitin-protein ligase listerin K22377 LTN1; E3 ubiquitin-protein ligase listerin [EC:2.3.2.27] D 130192810 tcf25; transcription factor 25 K24970 TCF25; transcription factor 25 D 130201425 ribosome quality control complex subunit NEMF-like K24971 NEMF; nuclear export mediator factor NEMF D 130203424 nploc4; nuclear protein localization protein 4 homolog K14015 NPLOC4; nuclear protein localization protein 4 D 130197003 ufd1l; ubiquitin recognition factor in ER-associated degradation protein 1 K14016 UFD1; ubiquitin fusion degradation protein 1 D 130202641 ptrhd1; putative peptidyl-tRNA hydrolase PTRHD1 K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29] D 130203422 ankzf1; ankyrin repeat and zinc finger domain-containing protein 1 isoform X1 K26089 ANKZF1; ankyrin repeat and zinc finger domain-containing protein 1 C Other pre-60S particles D 130204905 bxdc2; ribosome biogenesis protein BRX1 homolog K14820 BRX1; ribosome biogenesis protein BRX1 D 130201428 znf593; zinc finger protein 593 K14821 BUD20; bud site selection protein 20 D 130189672 ccdc86; coiled-coil domain-containing protein 86 K14822 CGR1; rRNA-processing protein CGR1 D 130193834 ebna1bp2; probable rRNA-processing protein EBP2 K14823 EBP2; rRNA-processing protein EBP2 D 130191766 bop1; LOW QUALITY PROTEIN: ribosome biogenesis protein bop1 K14824 ERB1; ribosome biogenesis protein ERB1 D 130194499 tmed5; transmembrane emp24 domain-containing protein 5 K14825 TMED5; p24 family protein gamma-2 D 130197578 pak1ip1; p21-activated protein kinase-interacting protein 1-like K14830 MAK11; protein MAK11 D 130197220 mak16; protein MAK16 homolog K14831 MAK16; protein MAK16 D 130202150 cebpz; CCAAT/enhancer-binding protein zeta K14832 MAK21; ribosome biogenesis protein MAK21 D 130202298 mdn1; midasin K14572 MDN1; midasin D 130191641 60S ribosome subunit biogenesis protein NIP7 homolog K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 D 130192394 nip7; 60S ribosome subunit biogenesis protein NIP7 homolog K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 D 130199112 noc2l; nucleolar complex protein 2 homolog K14833 NOC2; nucleolar complex protein 2 D 130213434 nop2; probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] D 130195771 rbm28; RNA-binding protein 28 K14573 NOP4; nucleolar protein 4 D 130191000 RNA-binding protein 34-like K14837 NOP12; nucleolar protein 12 D 130191018 RNA-binding protein 34-like K14837 NOP12; nucleolar protein 12 D 130191049 rbm34; RNA-binding protein 34 K14837 NOP12; nucleolar protein 12 D 130208411 nifk; MKI67 FHA domain-interacting nucleolar phosphoprotein K14838 NOP15; nucleolar protein 15 D 130211159 nop53; ribosome biogenesis protein NOP53 K14840 NOP53; nucleolar protein 53 D 130210433 wdr74; WD repeat-containing protein 74 K14841 NSA1; ribosome biogenesis protein NSA1 D 130205248 nsa2; ribosome biogenesis protein NSA2 homolog K14842 NSA2; ribosome biogenesis protein NSA2 D 130197259 pes; pescadillo K14843 PES1; pescadillo D 130205550 pum3; pumilio homolog 3 isoform X1 K14844 PUF6; pumilio homology domain family member 6 D 130200658 pwp1; periodic tryptophan protein 1 homolog K14791 PWP1; periodic tryptophan protein 1 D 130189195 dxo; decapping and exoribonuclease protein K14845 RAI1; RAT1-interacting protein D 130202273 riox1; ribosomal oxygenase 1 K16914 RIOX1; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69] D 130211722 riox2; ribosomal oxygenase 2 K21760 RIOX2; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine9 demethylase [EC:1.14.11.79 1.14.11.66] D 130206967 nvl; nuclear valosin-containing protein-like isoform X1 K14571 RIX7; ribosome biogenesis ATPase D 130193457 rpf1; ribosome production factor 1 K14846 RPF1; ribosome production factor 1 D 130203415 rpf2; ribosome production factor 2 homolog K14847 RPF2; ribosome production factor 2 D 130212939 grwd1; glutamate-rich WD repeat-containing protein 1 K14848 RRB1; ribosome assembly protein RRB1 D 130207013 ribosomal RNA processing protein 1 homolog B-like K14849 RRP1; ribosomal RNA-processing protein 1 D 130210494 rrp8; ribosomal RNA-processing protein 8 K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287] D 130206797 rrp12; RRP12-like protein isoform X1 K14794 RRP12; ribosomal RNA-processing protein 12 D 130188295 nol12; nucleolar protein 12 K14851 RRP17; ribosomal RNA-processing protein 17 D 130206546 rrs1; ribosome biogenesis regulatory protein homolog K14852 RRS1; regulator of ribosome biosynthesis D 130190723 nle1; notchless protein homolog 1 K14855 RSA4; ribosome assembly protein 4 D 130205211 sdad1; protein SDA1 homolog K14856 SDA1; protein SDA1 D 130193768 ftsj3; pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] D 130188511 suppressor of SWI4 1 homolog K14859 SSF1_2; ribosome biogenesis protein SSF1/2 D 130190318 tma16; translation machinery-associated protein 16 K14860 TMA16; translation machinery-associated protein 16 D 130210944 urb1; nucleolar pre-ribosomal-associated protein 1 isoform X1 K14861 URB1; nucleolar pre-ribosomal-associated protein 1 D 130192363 urb2; unhealthy ribosome biogenesis protein 2 homolog K14862 URB2; nucleolar pre-ribosomal-associated protein 2 D 130204370 wdr12; ribosome biogenesis protein wdr12 K14863 WDR12; ribosome biogenesis protein D 130204522 nufip1; nuclear fragile X mental retardation-interacting protein 1 K23308 NUFIP1; nuclear fragile X mental retardation-interacting protein 1 D 130189165 znhit3; zinc finger HIT domain-containing protein 3 K23309 ZNHIT3; zinc finger HIT domain-containing protein 3 B Other ribosome biogenesis factors C 130203310 bccip; protein BCCIP homolog K15262 BCP1; protein BCP1 C 130208561 lyar; cell growth-regulating nucleolar protein K15263 LYER; cell growth-regulating nucleolar protein C 130197651 nsun4; 5-methylcytosine rRNA methyltransferase NSUN4 K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4 [EC:2.1.1.-] C 130199559 nsun5; probable 28S rRNA (cytosine-C(5))-methyltransferase K15264 NSUN5; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311] C 130201867 tfb1m; dimethyladenosine transferase 1, mitochondrial K15266 TFB1M; dimethyladenosine transferase 1, mitochondrial [EC:2.1.1.-] C 130203647 mrm1; rRNA methyltransferase 1, mitochondrial K15507 MRM1; 21S rRNA (GM2251-2'-O)-methyltransferase [EC:2.1.1.-] C 130195077 bmt2; S-adenosylmethionine sensor upstream of mTORC1 isoform X1 K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase [EC:2.1.1.286] C 130210734 mrm3a; rRNA methyltransferase 3A, mitochondrial K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase [EC:2.1.1.-] C 130211888 zcchc4; rRNA N6-adenosine-methyltransferase ZCCHC4 K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4 [EC:2.1.1.-] C 130192655 ddx28; probable ATP-dependent RNA helicase DDX28 K20096 DDX28; ATP-dependent RNA helicase DDX28 [EC:5.6.2.7] C 130191795 dhx33; ATP-dependent RNA helicase DHX33 isoform X1 K17820 DHX33; ATP-dependent RNA helicase DHX33 [EC:5.6.2.6] C 130195469 ighmbp2; DNA-binding protein SMUBP-2 K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3] C 130213193 isg20l2; interferon-stimulated 20 kDa exonuclease-like 2 K18329 ISG20L2; interferon-stimulated 20 kDa exonuclease-like 2 [EC:3.1.-.-] C 130188478 kdm8; LOW QUALITY PROTEIN: lysine-specific demethylase 8 K10277 KDM8; [protein]-arginine 3-hydroxylase / protease [EC:1.14.11.73 3.4.-.-] C 130209994 phf6; PHD finger protein 6 isoform X1 K23310 PHF6; PHD finger protein 6 C 130191866 eral1; GTPase Era, mitochondrial K03595 era; GTPase C 130200530 nopchap1; uncharacterized protein C12orf45 homolog isoform X1 K26142 NOPCHAP1; NOP protein chaperone 1 C 130208670 pa2g4a; proliferation-associated protein 2G4a isoform X1 K26736 PA2G4; ERBB-3 binding protein C 130199397 pa2g4b; proliferation-associated protein 2G4b isoform X1 K26736 PA2G4; ERBB-3 binding protein C 130207017 mtg1; mitochondrial ribosome-associated GTPase 1 K19828 MTG1; mitochondrial GTPase 1 C 130199125 mtg2; mitochondrial ribosome-associated GTPase 2 K03979 obgE; GTPase [EC:3.6.5.-] C 130210676 nitric oxide-associated protein 1-like K19832 NOA1; nitric oxide-associated protein 1 # AProkaryotic type B Sno RNPs C Box C/D snoRNPs D 130191278 nop56; nucleolar protein 56 isoform X1 K14564 NOP56; nucleolar protein 56 D 130204852 rpl7a; 60S ribosomal protein L7a K02936 RP-L7Ae; large subunit ribosomal protein L7Ae C Box H/ACA snoRNPs D 130201409 dkc1; H/ACA ribonucleoprotein complex subunit DKC1 isoform X1 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D 130211570 nop10; H/ACA ribonucleoprotein complex subunit 3 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 B rRNA transcription factors B rRNA modification factors C 16S rRNA modification factors C 23S rRNA modification factors D 130188109 mrm2; rRNA methyltransferase 2, mitochondrial K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] B ribosomal protein modification factors B rRNA processing factors C 130205955 drosha; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3] B rRNA helicases B GTPases C 130191866 eral1; GTPase Era, mitochondrial K03595 era; GTPase C 130199125 mtg2; mitochondrial ribosome-associated GTPase 2 K03979 obgE; GTPase [EC:3.6.5.-] B Other maturation factors C 130212805 yrdc; yrdC domain-containing protein, mitochondrial K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024