+F Repair protein KO
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DNA Repair and Recombination Proteins - Candidatus Prometheoarchaeum syntrophicum
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E DSAG12_03016 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E DSAG12_03051 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E DSAG12_02295 DNA-3-methyladenine glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E DSAG12_01333 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
E DSAG12_03812 pcn; proliferating cell nuclear antigen (pcna) K04802 PCNA; proliferating cell nuclear antigen
E DSAG12_01527 fen; flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E DSAG12_02146 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F DSAG12_01473 DNA-directed RNA polymerase subunit K K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E DSAG12_02591 helicase C-terminal domain-containing protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E DSAG12_02088 helicase C-terminal domain-containing protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
E DSAG12_00658 DUF2240 family protein K07466 RFA1; replication factor A1
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
E DSAG12_00658 DUF2240 family protein K07466 RFA1; replication factor A1
D RFC (replication factor C)
D Other MMR factors
E DSAG12_03812 pcn; proliferating cell nuclear antigen (pcna) K04802 PCNA; proliferating cell nuclear antigen
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
E DSAG12_02140 radA; DNA repair and recombination protein RadA K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E DSAG12_02140 radA; DNA repair and recombination protein RadA K04482 RAD51; DNA repair protein RAD51
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
E DSAG12_00658 DUF2240 family protein K07466 RFA1; replication factor A1
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E DSAG12_02140 radA; DNA repair and recombination protein RadA K04482 RAD51; DNA repair protein RAD51
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
D DSAG12_03812 pcn; proliferating cell nuclear antigen (pcna) K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
D DSAG12_03699 AAA family ATPase K12196 VPS4; vacuolar protein-sorting-associated protein 4
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D DSAG12_03857 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D DSAG12_01309 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E DSAG12_00806 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E DSAG12_03016 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E DSAG12_03051 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E DSAG12_03177 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E DSAG12_01333 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E DSAG12_01413 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E DSAG12_03655 TIM barrel protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E DSAG12_00150 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E DSAG12_00243 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E DSAG12_00991 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E DSAG12_03260 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
E DSAG12_00907 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
E DSAG12_00303 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E DSAG12_00231 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E DSAG12_00554 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2
E DSAG12_02322 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E DSAG12_00200 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E DSAG12_00303 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E DSAG12_00207 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E DSAG12_03191 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
E DSAG12_03190 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
E DSAG12_00940 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E DSAG12_00150 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E DSAG12_00243 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E DSAG12_00991 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E DSAG12_03747 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
E DSAG12_01197 ATPase domain-containing protein K04483 radA; DNA repair protein RadA
E DSAG12_01201 AAA family ATPase K04484 radB; DNA repair protein RadB
E DSAG12_03191 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
E DSAG12_03190 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
E DSAG12_00940 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
E DSAG12_01981 DEAD/DEAH box helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
E DSAG12_02136 DEAD/DEAH box helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F DSAG12_02206 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F DSAG12_02205 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F DSAG12_02490 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F DSAG12_00150 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F DSAG12_00243 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F DSAG12_00991 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Facilitator
E Supressor
F DSAG12_03260 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D DSAG12_01941 dinB; DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D DSAG12_03857 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D DSAG12_01309 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
D DSAG12_02287 hypothetical protein K22585 nreA; DNA repair protein NreA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024