+F Repair protein KO #

  DNA Repair and Recombination Proteins - Candidatus Prometheoarchaeum syntrophicum

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E DSAG12_03016 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DSAG12_03051 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DSAG12_02295 DNA-3-methyladenine glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E DSAG12_01333 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E DSAG12_03812 pcn; proliferating cell nuclear antigen (pcna) K04802 PCNA; proliferating cell nuclear antigen E DSAG12_01527 fen; flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E DSAG12_02146 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex F DSAG12_01473 DNA-directed RNA polymerase subunit K K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 E Cul4-CSA complex E Other TCR factor D TFIIH complex E DSAG12_02591 helicase C-terminal domain-containing protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E DSAG12_02088 helicase C-terminal domain-containing protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E DSAG12_00658 DUF2240 family protein K07466 RFA1; replication factor A1 D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E DSAG12_00658 DUF2240 family protein K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E DSAG12_03812 pcn; proliferating cell nuclear antigen (pcna) K04802 PCNA; proliferating cell nuclear antigen B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex E DSAG12_02140 radA; DNA repair and recombination protein RadA K04482 RAD51; DNA repair protein RAD51 D RecA family proteins E DSAG12_02140 radA; DNA repair and recombination protein RadA K04482 RAD51; DNA repair protein RAD51 D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E DSAG12_00658 DUF2240 family protein K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors E DSAG12_02140 radA; DNA repair and recombination protein RadA K04482 RAD51; DNA repair protein RAD51 C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D DSAG12_03812 pcn; proliferating cell nuclear antigen (pcna) K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors D DSAG12_03699 AAA family ATPase K12196 VPS4; vacuolar protein-sorting-associated protein 4 B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DSAG12_03857 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DSAG12_01309 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E DSAG12_00806 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E DSAG12_03016 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DSAG12_03051 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DSAG12_03177 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E DSAG12_01333 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DSAG12_01413 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E DSAG12_03655 TIM barrel protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E DSAG12_00150 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DSAG12_00243 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DSAG12_00991 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E DSAG12_03260 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E DSAG12_00907 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E DSAG12_00303 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DSAG12_00231 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E DSAG12_00554 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 E DSAG12_02322 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E DSAG12_00200 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E DSAG12_00303 UvrD-helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DSAG12_00207 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DSAG12_03191 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E DSAG12_03190 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E DSAG12_00940 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E DSAG12_00150 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DSAG12_00243 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DSAG12_00991 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E DSAG12_03747 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E DSAG12_01197 ATPase domain-containing protein K04483 radA; DNA repair protein RadA E DSAG12_01201 AAA family ATPase K04484 radB; DNA repair protein RadB E DSAG12_03191 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E DSAG12_03190 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E DSAG12_00940 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E DSAG12_01981 DEAD/DEAH box helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] E DSAG12_02136 DEAD/DEAH box helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DSAG12_02206 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DSAG12_02205 type IIA DNA topoisomerase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DSAG12_02490 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DSAG12_00150 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DSAG12_00243 DHH family phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DSAG12_00991 DHHA1 domain-containing protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor F DSAG12_03260 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DSAG12_01941 dinB; DNA polymerase IV K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D DSAG12_03857 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DSAG12_01309 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D DSAG12_02287 hypothetical protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024