+F Repair protein KO #

  DNA Repair and Recombination Proteins - Stutzerimonas stutzeri ATCC 17588 = LMG 11199

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PSTAB_1860 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PSTAB_1124 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSTAB_4065 mutY; A / G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSTAB_1113 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E PSTAB_1997 rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PSTAB_3211 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSTAB_0507 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PSTAB_3591 AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PSTAB_1860 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D PSTAB_0854 hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E PSTAB_1124 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PSTAB_0269 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PSTAB_3923 leucyl-tRNA synthetase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E PSTAB_2324 alkA; DNA-3-methyladenine glycosidase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PSTAB_4065 mutY; A / G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PSTAB_0017 DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PSTAB_3967 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PSTAB_0750 endonuclease K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E PSTAB_1113 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PSTAB_0501 catabolite repression control protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PSTAB_2072 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PSTAB_3154 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PSTAB_3597 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E PSTAB_2744 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PSTAB_3892 yicF; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSTAB_1757 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PSTAB_0168 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PSTAB_0698 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E PSTAB_3036 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E PSTAB_1980 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E PSTAB_0238 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSTAB_0168 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E PSTAB_3892 yicF; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSTAB_1757 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PSTAB_0663 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PSTAB_0664 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PSTAB_0695 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PSTAB_0491 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PSTAB_2638 transcription-repair coupling protein Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PSTAB_1409 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PSTAB_3634 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E PSTAB_1064 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PSTAB_3055 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PSTAB_3663 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PSTAB_1456 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PSTAB_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PSTAB_3105 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PSTAB_3724 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PSTAB_2597 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PSTAB_2136 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSTAB_3859 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PSTAB_1718 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E PSTAB_3892 yicF; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E PSTAB_1757 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PSTAB_0238 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PSTAB_1183 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E PSTAB_0700 putative single stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PSTAB_3426 recB; exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PSTAB_3994 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PSTAB_3427 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PSTAB_3995 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PSTAB_3425 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PSTAB_3993 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PSTAB_1412 recA; recombinase A K03553 recA; recombination protein RecA E PSTAB_2831 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PSTAB_2830 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSTAB_2832 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PSTAB_0585 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PSTAB_1064 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PSTAB_0738 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PSTAB_0739 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PSTAB_1412 recA; recombinase A K03553 recA; recombination protein RecA E PSTAB_0838 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E PSTAB_0003 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E PSTAB_0195 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PSTAB_2744 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PSTAB_1141 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E PSTAB_1720 recR; recombination protein RecR K06187 recR; recombination protein RecR E PSTAB_3374 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PSTAB_2756 rdgC; recombination associated protein K03554 rdgC; recombination associated protein RdgC E PSTAB_2831 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E PSTAB_2830 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PSTAB_2832 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E PSTAB_0738 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E PSTAB_0739 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E PSTAB_1068 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E PSTAB_2050 KU domain-containing protein K10979 ku; DNA end-binding protein Ku E PSTAB_2049 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E PSTAB_2018 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PSTAB_2223 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PSTAB_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PSTAB_2101 DNA topoisomerase, type I, putative K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F PSTAB_1623 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PSTAB_0470 hupA; HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F PSTAB_1962 hupB; histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PSTAB_2744 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PSTAB_1141 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F PSTAB_1720 recR; recombination protein RecR K06187 recR; recombination protein RecR F PSTAB_3892 yicF; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F PSTAB_1757 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PSTAB_3325 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PSTAB_2264 himA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F PSTAB_2416 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F PSTAB_1064 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PSTAB_0327 ATP-dependent DNA helicase domain-containing protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PSTAB_2367 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PSTAB_0698 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F PSTAB_3036 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PSTAB_3032 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PSTAB_2791 impB/mucB/samB family protein K03502 umuC; DNA polymerase V D PSTAB_2792 rulA; ultraviolet light resistance protein A K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PSTAB_1412 recA; recombinase A K03553 recA; recombination protein RecA D PSTAB_1628 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PSTAB_3374 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PSTAB_2770 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D PSTAB_2225 cell division inhibitor SulA, putative K14160 imuA; protein ImuA D PSTAB_2226 nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB D PSTAB_2227 dnaE; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D PSTAB_1183 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PSTAB_0700 putative single stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein D PSTAB_1413 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PSTAB_0534 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PSTAB_1848 helicase K03658 helD; DNA helicase IV [EC:5.6.2.4] D PSTAB_1427 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PSTAB_2645 DEAD-box ATP dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D PSTAB_3211 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PSTAB_0507 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PSTAB_0162 ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PSTAB_1548 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PSTAB_1547 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024