+E Transcription factors KO
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Transcription Factors - Pseudomonas taetrolens
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D NCTC10697_02046 ureR_2; AraC family transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D NCTC10697_03339 putative transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D NCTC10697_02730 rhaS_6; araC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D NCTC10697_03586 adaA; araC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D NCTC10697_00781 alkA; DNA-3-methyladenine glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D NCTC10697_00379 rhaS_2; AraC family transcriptional regulator K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D NCTC10697_03323 rhaS_10; AraC family transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D NCTC10697_00373 rhaS_1; AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D NCTC10697_01736 rhaR_1; AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D NCTC10697_01988 rhaS_5; AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D NCTC10697_00069 gcvA_2; LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D NCTC10697_01106 gcvA_4; LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D NCTC10697_04047 gcvA_8; LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D NCTC10697_00702 pcaQ; HTH-type transcriptional regulator PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D NCTC10697_00969 metR; HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D NCTC10697_01693 nhaR; LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D NCTC10697_00112 oxyR_1; LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D NCTC10697_01099 iciA; chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D NCTC10697_00430 cynR_2; LysR family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D NCTC10697_01437 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D NCTC10697_04307 gcvA_9; DNA-binding transcriptional regulator DsdC K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D NCTC10697_02448 cynR_5; LysR family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC
D NCTC10697_02742 dmlR_11; LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D NCTC10697_01898 cynR_3; LysR family transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D NCTC10697_02181 nodD2; LysR family transcriptional regulator K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D NCTC10697_02731 dmlR_10; LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D NCTC10697_03749 dmlR_18; transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D NCTC10697_03125 dmlR_14; LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D NCTC10697_02259 cynR_4; LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D NCTC10697_02158 qseD_1; LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D NCTC10697_04435 qseD_2; regulatory protein LysR K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D NCTC10697_03929 allS_3; LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D NCTC10697_00250 cmpR1; HTH-type transcriptional activator CmpR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D NCTC10697_04450 cmpR_3; LysR family transcriptional regulator K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator
D NCTC10697_01900 catR; transcriptional activator CatR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D NCTC10697_02613 abgR_2; LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D NCTC10697_00189 gcvA_3; HTH-type transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator
C DeoR family
D NCTC10697_00979 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D NCTC10697_01968 dna-binding protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NCTC10697_01969 gntR_1; putative LacI family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NCTC10697_02834 rbsR_2; LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NCTC10697_02404 rbsR_1; LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D NCTC10697_00787 fruR; fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D NCTC10697_03343 gntR_2; LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D NCTC10697_01852 yvoA_1; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D NCTC10697_04232 yvoA_3; histidine utilization transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D NCTC10697_02470 yvoA_2; GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D NCTC10697_01495 lutR_1; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NCTC10697_02691 lutR_5; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NCTC10697_03823 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NCTC10697_03880 lutR_8; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D NCTC10697_01888 glcC; Glc operon transcriptional activator K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D NCTC10697_02722 mocR2; putative rhizopine catabolism regulatory protein MocR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D NCTC10697_04442 mocR4; putative rhizopine catabolism regulatory protein MocR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D NCTC10697_02509 mcbR; GntR family transcriptional regulator K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator
C TetR/AcrR family
D NCTC10697_00363 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D NCTC10697_01048 ttgR; HTH-type transcriptional regulator TtgR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D NCTC10697_01763 rutR4; HTH-type transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator
D NCTC10697_02920 rutR_3; regulatory protein, TetR K09017 rutR; TetR/AcrR family transcriptional regulator
D NCTC10697_03930 rutR1; HTH-type transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator
D NCTC10697_02747 acrR_2; transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D NCTC10697_03477 acrR_3; TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D NCTC10697_04031 fabR; TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D NCTC10697_01688 rutR_2; TetR family transcriptional regulator K22294 nicS; TetR/AcrR family transcriptional regulator, upper aerobic nicotinate degradation pathway regulator
C Lrp/AsnC family
D NCTC10697_00081 lrp_1; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NCTC10697_00650 lrp_3; regulatory proteins, AsnC/Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NCTC10697_01755 lrp_5; AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NCTC10697_02843 lrp_6; MarR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D NCTC10697_00680 lrp_4; AsnC family transcriptional regulator K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
D NCTC10697_03145 lrp_7; AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D NCTC10697_04326 lrp_8; AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
C MarR family
D NCTC10697_03018 slyA_1; MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D NCTC10697_04397 slyA_2; transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D NCTC10697_01685 marR_1; putative MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
C MerR family
D NCTC10697_03941 hmrR; MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D NCTC10697_02454 merR1; merR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D NCTC10697_03605 ycgE_2; MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D NCTC10697_03672 ycgE_3; merR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D NCTC10697_03817 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NCTC10697_00146 zur; zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D NCTC10697_01037 pobR_1; PcaR family Pca regulon regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D NCTC10697_01941 pobR_2; putative IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D NCTC10697_01845 pcaR2; Pca regulon regulatory protein PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D NCTC10697_00481 vfr; Crp family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NCTC10697_01604 fnr; Crp/FNR family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D NCTC10697_00914 iscR; BadM/Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D NCTC10697_02784 arsR; arsenic resistance transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D NCTC10697_03361 hexR; transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D NCTC10697_04452 ybbH; RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D NCTC10697_00499 birA; bifunctional protein biotin operon repressor/biotin-[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NCTC10697_03984 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NCTC10697_03559 mqsA; XRE family transcriptional regulator K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D NCTC10697_02979 ntrC_1; transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D NCTC10697_00604 acoR2; acetoin catabolism regulatory protein AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NCTC10697_01706 acoR_1; transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NCTC10697_01926 acoR_2; fis family GAF modulated sigma54 specific transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NCTC10697_02642 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D NCTC10697_00587 zraR_1; Fis family transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D NCTC10697_00874 norR_2; anaerobic nitric oxide reductase transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D NCTC10697_02235 cdaR; CdaR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D NCTC10697_00420 modE; ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
D NCTC10697_01964 nikR; nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D NCTC10697_04134 putA; bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D NCTC10697_01549 bolA; protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D NCTC10697_04482 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NCTC10697_01571 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D NCTC10697_02992 tyrR_1; transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D NCTC10697_03386 tyrR_2; putative regulatory protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D NCTC10697_01354 gcvR; protein GcvR K03567 gcvR; glycine cleavage system transcriptional repressor
D NCTC10697_00051 rnk_1; regulator of nucleoside diphosphate kinase Rnk K06140 rnk; regulator of nucleoside diphosphate kinase
D NCTC10697_04469 rnk_2; acetyltransferase, GNAT family K06140 rnk; regulator of nucleoside diphosphate kinase
D NCTC10697_00303 pyrR; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D NCTC10697_03833 prophage CP4-57 regulatory K07733 alpA; prophage regulatory protein
D NCTC10697_04443 paiB; negative transcriptional regulator K07734 paiB; transcriptional regulator
D NCTC10697_00305 algH; protein AlgH K07735 algH; putative transcriptional regulator
D NCTC10697_01809 dksA1; transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D NCTC10697_03777 dksA2; DnaK suppressor protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D NCTC10697_00566 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D NCTC10697_00852 mraZ; cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0