+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Puntigrus tetrazona (Sumatra barb)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 122323966 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 122324536 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 122344756 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 122329024 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 122349761 cmtr2; LOW QUALITY PROTEIN: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
D Cap binding complex
E 122357822 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 122327650 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 122362458 nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 122343489 cpsf6; LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 122357296 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 122357305 polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 122326259 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 122323616 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 122325430 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 122324795 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 122341265 cpsf4; cleavage and polyadenylation specificity factor subunit 4 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 122325198 fip1l1a; pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 122350446 fip1l1b; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 122327555 wdr33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 122347394 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 122361931 ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 122355425 ppp1cab; protein phosphatase 1, catalytic subunit, alpha isozyme b K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 122348866 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 122341604 ppp1caa; protein phosphatase 1, catalytic subunit, alpha isozyme a K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 122344697 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit A K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 122327998 ssu72; LOW QUALITY PROTEIN: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 122354686 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 122357906 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 122362925 cstf3; cleavage stimulation factor subunit 3 isoform X1 K14408 CSTF3; cleavage stimulation factor subunit 3
E 122345977 sympk; symplekin isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 122334287 snrpb; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 122326664 snrpd3l; small nuclear ribonucleoprotein D3 polypeptide, like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 122350316 snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 122353656 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 122349361 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 122329237 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 122323434 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 122357627 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 122325430 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 122324795 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 122357906 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 122345977 sympk; symplekin isoform X1 K06100 SYMPK; symplekin
E 122326856 slbp2; stem-loop binding protein 2 isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 122358281 histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 122324931 casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 122344844 transcription elongation factor SPT4 isoform X1 K15171 SUPT4H1; transcription elongation factor SPT4
E 122358752 supt5h; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 122348480 mettl3; N6-adenosine-methyltransferase subunit METTL3 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 122342516 mettl14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 122347866 mettl4; N(6)-adenine-specific methyltransferase METTL4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 122326836 RNA N6-adenosine-methyltransferase mettl16 isoform X1 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 122324754 pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 122360542 virma; protein virilizer homolog K22910 VIRMA; protein virilizer
E 122327692 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 122350154 rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 122350548 zc3h13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 122330341 E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
E 122343499 cbll1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Hakai K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 122324715 papola; poly(A) polymerase alpha isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 122356800 papolg; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 122345671 tent2; poly(A) RNA polymerase GLD2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 122355091 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase isoform X1 K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 122351380 bard1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 122346776 rbm26; RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26
E 122349454 fto; alpha-ketoglutarate-dependent dioxygenase FTO isoform X1 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 122347062 alkbh5; LOW QUALITY PROTEIN: RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 122328732 tardbpa; TAR DNA binding protein, like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 122347318 tardbpb; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 122358392 dhx40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 122342512 kin; DNA/RNA-binding protein KIN17 isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17
D 122332284 mettl8; LOW QUALITY PROTEIN: mRNA N(3)-methylcytidine methyltransferase METTL8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 122341698 mettl22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 122332855 tent5ab; terminal nucleotidyltransferase 5Ab K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 122359952 tent5aa; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 122360658 tent5ba; terminal nucleotidyltransferase 5ba K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 122351425 tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 122324461 zc3h14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 122345157 srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 122361139 rbm8a; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 122350021 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 122341110 alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 122323601 ddx39b; DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 122354527 eif4a3; LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 122347190 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 122339939 casc3; protein CASC3 isoform X1 K14323 CASC3; protein CASC3
E 122351991 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 122362157 pnn; pinin K13114 PNN; pinin
E 122362217 pinin-like K13114 PNN; pinin
E 122348727 acin1b; apoptotic chromatin condensation inducer 1b isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 122358013 acin1a; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 122340995 RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 122361684 srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 122362730 thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 122357944 thoc2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 122357900 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 122341110 alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 122330634 thoc5; THO complex subunit 5 homolog isoform X1 K13174 THOC5; THO complex subunit 5
E 122341734 thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 122353678 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 122342263 pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 122323387 sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 122360617 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 122358257 cetn2; caltractin isoform X1 K10840 CETN2; centrin-2
E 122333713 cetn3; centrin-3 K16466 CETN3; centrin-3
E 122351791 germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 122324505 tprb; LOW QUALITY PROTEIN: translocated promoter region b, nuclear basket protein K09291 TPR; nucleoprotein TPR
E 122360460 tpra; LOW QUALITY PROTEIN: nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 122347425 rae1; mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 122327691 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 122343227 nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 122341571 nup85; nuclear pore complex protein Nup85 isoform X1 K14304 NUP85; nuclear pore complex protein Nup85
E 122324311 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 122342610 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 122340996 nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 122358130 nup62l; nucleoporin 62 like isoform X1 K14306 NUP62; nuclear pore complex protein Nup62
E 122345649 nup88; nucleoporin 88 isoform X1 K14318 NUP88; nuclear pore complex protein Nup88
E 122322939 nup93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 122326241 nup98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 122343456 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 122343519 nup133; nuclear pore complex protein Nup133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133
E 122332555 nup188; nucleoporin NUP188 isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 122323864 nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 122333893 nup155; nuclear pore complex protein Nup155 isoform X1 K14312 NUP155; nuclear pore complex protein Nup155
E 122337954 nup160; nuclear pore complex protein Nup160 isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 122351167 nup35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 122362451 nup205; LOW QUALITY PROTEIN: nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 122328945 nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 122329156 nuclear pore membrane glycoprotein 210-like K14314 NUP210; nuclear pore complex protein Nup210
E 122345403 nup214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 122353184 pom121; nuclear envelope pore membrane protein POM 121 K14316 POM121; nuclear pore complex protein Nup121
E 122329658 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 122335215 nup42; nucleoporin NUP42 K14321 NUPL2; nucleoporin-like protein 2
E 122326548 ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 122324079 seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 122360025 nucleoporin SEH1-like K14299 SEH1; nucleoporin SEH1
E 122351648 LOW QUALITY PROTEIN: E3 SUMO-protein ligase RanBP2-like K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 122351650 LOW QUALITY PROTEIN: E3 SUMO-protein ligase RanBP2-like K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 122347130 senp2; sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 122340426 aaas; aladin K14320 AAAS; aladin
E 122333713 cetn3; centrin-3 K16466 CETN3; centrin-3
E 122350839 gle1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 122326501 nxf1b; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 122357369 nxf1a; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 122357438 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 122358030 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 122348441 anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 122352138 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 122335065 LOW QUALITY PROTEIN: tumor necrosis factor ligand superfamily member 13-like K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 122335067 LOW QUALITY PROTEIN: tumor necrosis factor ligand superfamily member 13-like K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 122353707 elavl1b; ELAV-like protein 1b isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 122360921 elavl1a; ELAV-like protein 1a isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 122327177 elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 122341494 elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 122350556 elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 122358065 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 122344114 zgc:136908 K13525 VCP; transitional endoplasmic reticulum ATPase
E 122345300 transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 122361897 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 122353654 transportin-2 K18727 TNPO2; transportin-2
E 122361667 xpo1b; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 122346463 xpo1a; exportin-1 K14290 XPO1; exportin-1
E 122353236 xpo7; exportin-7 isoform X1 K18460 XPO7; exportin-7
E 122329910 rangap1a; ran GTPase-activating protein 1a K14319 RANGAP1; Ran GTPase-activating protein 1
E 122355721 rangap1b; ran GTPase-activating protein 1b K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 122324438 eif4e1b; eukaryotic translation initiation factor 4E-1B K03259 EIF4E; translation initiation factor 4E
E 122328135 eif4e2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 122332170 eukaryotic translation initiation factor 4E-1A-like isoform X1 K03259 EIF4E; translation initiation factor 4E
E 122334610 eif4e2rs1; eukaryotic translation initiation factor 4E family member 2 related sequence 1 K03259 EIF4E; translation initiation factor 4E
E 122356545 eif4e1c; eukaryotic translation initiation factor 4E family member 1c isoform X1 K03259 EIF4E; translation initiation factor 4E
E 122357575 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 122348939 eif4a1a; eukaryotic translation initiation factor 4A1A K03257 EIF4A; translation initiation factor 4A
E 122356735 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 122345537 eif4a1b; eukaryotic translation initiation factor 4A1B K03257 EIF4A; translation initiation factor 4A
E 122324296 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X1 K03260 EIF4G; translation initiation factor 4G
E 122328729 eif4g3b; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 122332969 wu:fb16f03; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 122348000 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 122362891 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b K03260 EIF4G; translation initiation factor 4G
E 122353541 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 122328980 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 122347272 eif4bb; eukaryotic translation initiation factor 4Bb isoform X1 K03258 EIF4B; translation initiation factor 4B
E 122358583 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 122326256 eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 isoform X1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 122356584 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 122326892 eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 122357800 eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 122357801 eif4ebp3l; eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 122347562 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 122324995 angel2; LOW QUALITY PROTEIN: protein angel homolog 2 K18729 ANGEL; protein angel
E 122361534 angel1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 122334057 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 122349077 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 122357877 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 122357876 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 122346609 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 122326910 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 122356386 LOW QUALITY PROTEIN: transforming acidic coiled-coil-containing protein 3-like K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 122356826 LOW QUALITY PROTEIN: transforming acidic coiled-coil-containing protein 3-like K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 122326136 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122328853 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122331069 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122348094 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122356691 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122357866 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122334313 ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 122351264 ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 122323375 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 122348554 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 122352736 gigyf1b; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 122324211 pabpc1b; polyadenylate-binding protein 1b K13126 PABPC; polyadenylate-binding protein
E 122361689 pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 122350686 pabpc1l; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 122357970 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 122357982 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 122345063 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 122345268 paip2b; polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 122323911 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 122330650 deaf1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 122357301 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 122333734 denr; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 122355451 a1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 122350524 pym1; partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago
E 122328715 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 122352179 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 122353635 hnrnpa1a; heterogeneous nuclear ribonucleoprotein A1a isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 122331819 msi2a; RNA-binding protein Musashi homolog 2a isoform X1 K14411 MSI; RNA-binding protein Musashi
E 122349921 msi1b; RNA-binding protein Musashi homolog 1b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 122358870 msi2b; RNA-binding protein Musashi homolog 2b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 122359261 LOW QUALITY PROTEIN: RNA-binding protein Musashi homolog 1-like K14411 MSI; RNA-binding protein Musashi
E 122345937 RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 122354058 dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 122328663 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 122355424 pelo; protein pelota homolog K06965 PELO; protein pelota
E 122329628 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 122349551 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 122329189 ddx19a; ATP-dependent RNA helicase DDX19A isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 122354033 ddx19b; ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 122342076 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 122353575 SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 122359889 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 122362901 larp6a; la-related protein 6a K18733 LARP6; la-related protein 6
E 122353911 la-related protein 6-like K18733 LARP6; la-related protein 6
E 122326063 puraa; purine-rich element binding protein Aa K21772 PURA; transcriptional activator protein Pur-alpha
E 122357757 purab; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 122333741 purbb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 122345383 purba; purine-rich element binding protein Ba K21799 PURB; transcriptional activator protein Pur-beta
E 122341995 poldip3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 122353930 zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 122360445 leng8; LOW QUALITY PROTEIN: leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3
E 122355140 patl2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 122358123 etf1a; eukaryotic peptide chain release factor subunit 1-like K03265 ETF1; peptide chain release factor subunit 1
E 122352576 eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 122341508 gspt1l; G1 to S phase transition 1, like K03267 ERF3; peptide chain release factor subunit 3
E 122355511 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 122335602 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 122333230 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 122357713 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 122351316 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 122326636 ppp2cab; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 122357585 ppp2caa; protein phosphatase 2 catalytic subunit alpha a K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 122352582 ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 122345322 ppp2r1ba; protein phosphatase 2, regulatory subunit A, beta a K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 122359079 ppp2r1bb; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 122326071 ppp2r2bb; protein phosphatase 2, regulatory subunit B, beta b isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 122355524 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 122357349 ppp2r2cb; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 122350756 ppp2r2aa; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 122358100 ppp2r2ba; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 122343266 ppp2r2ca; protein phosphatase 2, regulatory subunit B, gamma a K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 122352958 ppp2r2ab; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 122362079 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 122351695 ppp2r3b; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 122360837 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 122324743 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 122325303 ppp2r5cb; protein phosphatase 2, regulatory subunit B', gamma b isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 122334492 ppp2r5ca; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 122348167 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 122356067 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 122356508 ppp2r5eb; protein phosphatase 2, regulatory subunit B', epsilon isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 122343285 ppp2r5ea; protein phosphatase 2, regulatory subunit B', epsilon K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 122332758 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 122360499 smg5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 122352653 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 122358798 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 122352969 smg8; protein SMG8 K18734 SMG8; protein SMG8
E 122359816 smg9; protein SMG9 K18735 SMG9; protein SMG9
E 122323375 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 122348554 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 122352736 gigyf1b; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 122344682 selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 122362986 secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 122363141 dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 122327070 gtpbp1l; GTP binding protein 1, like isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 122341643 gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 122353175 pum3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 122326412 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 122327707 si:dkey-110c1.10; unconventional myosin-Vb K10357 MYO5; myosin V
E 122330546 myo5ab; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 122330620 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 122363015 LOW QUALITY PROTEIN: unconventional myosin-Va-like K10357 MYO5; myosin V
E 122335504 zgc:171572; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 122363119 bicd1a; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 122342829 protein bicaudal D homolog 1-like isoform X1 K18739 BICD; protein bicaudal D
E 122350744 zgc:162200; protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 122353735 bicd2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 122362115 exd1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 122334390 actb2; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 122347056 actb1; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 122359849 myelin basic protein-like K17269 MBP; myelin basic protein
E 122330157 vim; vimentin K07606 VIM; vimentin
E 122340981 vimentin isoform X1 K07606 VIM; vimentin
E 122362984 viml; vimentin like K07606 VIM; vimentin
E 122348190 mtbl; metallothionein-B-like K14739 MT1_2; metallothionein 1/2
E 122363167 mt2; metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 122325413 mycb; transcriptional regulator Myc-B K04377 MYC; Myc proto-oncogene protein
E 122329955 myca; transcriptional regulator Myc-A K04377 MYC; Myc proto-oncogene protein
E 122333363 tbx6; LOW QUALITY PROTEIN: T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 122350425 tbx16; T-box transcription factor 16 isoform X1 K10180 TBX6; T-box protein 6
E 122357208 nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
E 122345265 nanos2; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 122332372 far upstream element-binding protein 3-like K13210 FUBP; far upstream element-binding protein
E 122350383 far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 122357769 fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 122346209 fubp3; LOW QUALITY PROTEIN: far upstream element-binding protein 3 K13210 FUBP; far upstream element-binding protein
E 122323413 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 122323414 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 122329418 si:dkey-37o8.1; elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 122329222 elongation factor 1-alpha 2-like K03231 EEF1A; elongation factor 1-alpha
E 122329284 eef1a2; LOW QUALITY PROTEIN: elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 122356607 eef1a1a; elongation factor 1-alpha 1a isoform X1 K03231 EEF1A; elongation factor 1-alpha
E 122346429 eef1a1b; elongation factor 1-alpha 1b K03231 EEF1A; elongation factor 1-alpha
E 122357934 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 122323591 hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 122328613 agfg1b; arf-GAP domain and FG repeat-containing protein 1b isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 122348632 agfg2; arf-GAP domain and FG repeat-containing protein 2 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 122358363 agfg1a; LOW QUALITY PROTEIN: arf-GAP domain and FG repeat-containing protein 1a K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 122329408 stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 122346444 stau1; LOW QUALITY PROTEIN: double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 122323965 igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 122324844 ptbp1a; polypyrimidine tract-binding protein 1a K13218 PTBP1; polypyrimidine tract-binding protein 1
E 122328470 LOW QUALITY PROTEIN: polypyrimidine tract-binding protein 1-like K13218 PTBP1; polypyrimidine tract-binding protein 1
E 122354216 ptbp1b; polypyrimidine tract-binding protein 1b isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 122326136 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122328853 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122331069 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122348094 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122356691 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122357866 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 122334057 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 122349077 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 122357877 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 122357876 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 122346609 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 122340440 pcbp2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 122327794 pcbp4; poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 122347322 LOW QUALITY PROTEIN: poly(rC)-binding protein 3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 122356085 zgc:110045; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 122351704 pcbp3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 122348528 caprin1a; caprin-1a isoform X1 K18743 CAPRIN1; caprin-1
E 122363082 caprin1b; caprin-1b isoform X1 K18743 CAPRIN1; caprin-1
E 122343467 caprin2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 122350143 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 122358240 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 122323566 ago4; protein argonaute-4 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 122323576 ago2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 122323689 ago3b; protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 122361084 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 122361085 ago1; protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 122324438 eif4e1b; eukaryotic translation initiation factor 4E-1B K03259 EIF4E; translation initiation factor 4E
E 122328135 eif4e2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 122332170 eukaryotic translation initiation factor 4E-1A-like isoform X1 K03259 EIF4E; translation initiation factor 4E
E 122334610 eif4e2rs1; eukaryotic translation initiation factor 4E family member 2 related sequence 1 K03259 EIF4E; translation initiation factor 4E
E 122356545 eif4e1c; eukaryotic translation initiation factor 4E family member 1c isoform X1 K03259 EIF4E; translation initiation factor 4E
E 122357575 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 122335602 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 122334313 ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 122351264 ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 122324173 probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 122362671 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 122360427 ddx61; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 122325295 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 122349799 mex3b; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 122361045 mex3a; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 122362623 fastk; fas-activated serine/threonine kinase isoform X1 K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 122330807 lsm14aa; LSM14A mRNA processing body assembly factor a isoform X1 K18749 LSM14; protein LSM14
E 122362667 lsm14ab; LOW QUALITY PROTEIN: LSM14A mRNA processing body assembly factor b K18749 LSM14; protein LSM14
E 122342453 lsm14b; protein LSM14 homolog B K18749 LSM14; protein LSM14
E 122340440 pcbp2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 122350143 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 122323000 Wilms tumor protein 1-interacting protein homolog K16682 AJUBA; LIM domain-containing protein
E 122348729 ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 122360568 limd1a; LIM domain-containing protein 1 isoform X1 K16682 AJUBA; LIM domain-containing protein
E 122347458 mov10a; putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 122350377 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 122350378 mov10b.2; LOW QUALITY PROTEIN: putative helicase mov-10-B.2 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 122360294 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 122345896 tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 122332758 smg1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 122360499 smg5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 122352653 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 122358798 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 122325117 zfp36l1b; mRNA decay activator protein ZFP36L1b K18753 ZFP36L; butyrate response factor
E 122361829 zfp36l1a; mRNA decay activator protein ZFP36L1a K18753 ZFP36L; butyrate response factor
E 122355610 zfp36l2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 122362559 mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 122357001 mRNA decay activator protein ZFP36L2-like K18753 ZFP36L; butyrate response factor
E 122358540 zgc:114130; LOW QUALITY PROTEIN: mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 122324935 lin28b; protein lin-28 homolog B isoform X1 K18754 LIN28; protein lin-28
E 122323468 lin28ab; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 122360356 protein lin-28 homolog A-like K18754 LIN28; protein lin-28
E 122360358 protein lin-28 homolog A-like K18754 LIN28; protein lin-28
E 122341945 htt; huntingtin isoform X1 K04533 HD; huntingtin
E 122343322 ipo8; importin-8 isoform X1 K18755 IPO8; importin-8
E 122355535 bicc1b; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 122362282 bicc1a; protein bicaudal C homolog 1-B isoform X1 K18756 BICC1; protein bicaudal C
E 122357417 bicc2; LOW QUALITY PROTEIN: bicaudal C homolog 2 K18756 BICC1; protein bicaudal C
E 122358212 LOW QUALITY PROTEIN: protein bicaudal C homolog 1-B-like K18756 BICC1; protein bicaudal C
E 122328715 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 122352179 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 122353635 hnrnpa1a; heterogeneous nuclear ribonucleoprotein A1a isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 122333172 cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 122341761 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 122344253 prkacab; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 122360276 prkacbb; protein kinase, cAMP-dependent, catalytic, beta b isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 122353933 prkacba; protein kinase, cAMP-dependent, catalytic, beta a K04345 PKA; protein kinase A [EC:2.7.11.11]
E 122326627 larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 122361928 larp1b; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 122341933 atxn2l; LOW QUALITY PROTEIN: ataxin-2-like protein K23625 ATXN2_2L; ataxin 2/2L
E 122345050 atxn2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 122352777 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 122335509 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 122342656 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 122343372 mRNA-decapping enzyme 1B-like K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 122350574 lsm1; U6 snRNA-associated Sm-like protein LSm1 isoform X1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 122346920 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 122328064 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 122354576 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 122355743 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 122330431 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 122330797 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 122327570 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 122343344 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 122327613 klc4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain
E 122348813 kinesin light chain 2-like K10407 KLC; kinesin light chain
E 122356573 klc1b; kinesin light chain 1b isoform X1 K10407 KLC; kinesin light chain
E 122356671 klc1a; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 122357058 kinesin light chain 1-like K10407 KLC; kinesin light chain
E 122359502 klc3; kinesin light chain 3 isoform X1 K10407 KLC; kinesin light chain
E 122326412 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 122327707 si:dkey-110c1.10; unconventional myosin-Vb K10357 MYO5; myosin V
E 122330546 myo5ab; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 122330620 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 122363015 LOW QUALITY PROTEIN: unconventional myosin-Va-like K10357 MYO5; myosin V
E 122328643 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 122328644 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 122328645 tubulin alpha-1C chain-like isoform X1 K07374 TUBA; tubulin alpha
E 122333754 tuba7l; tubulin, alpha 7 like K07374 TUBA; tubulin alpha
E 122347343 tuba8l4; tubulin, alpha 8 like 4 K07374 TUBA; tubulin alpha
E 122357121 tuba4l; LOW QUALITY PROTEIN: tubulin, alpha 4 like K07374 TUBA; tubulin alpha
E 122350646 tuba5; tubulin alpha 5 K07374 TUBA; tubulin alpha
E 122351230 tuba8l3; tubulin, alpha 8 like 3 K07374 TUBA; tubulin alpha
E 122352131 tubulin alpha-1D chain-like isoform X1 K07374 TUBA; tubulin alpha
E 122345986 tuba8l2; tubulin, alpha 8 like 2 K07374 TUBA; tubulin alpha
E 122354125 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 122326136 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122328853 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122331069 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122348094 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122356691 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122357866 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 122326910 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 122356386 LOW QUALITY PROTEIN: transforming acidic coiled-coil-containing protein 3-like K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 122356826 LOW QUALITY PROTEIN: transforming acidic coiled-coil-containing protein 3-like K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 122329660 tnrc6bb.1; LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 122339456 trinucleotide repeat-containing gene 6A protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 122341518 tnrc6c1; LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 122355165 tnrc6ba; trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 122346647 tnrc6c2; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 122330534 cnot1; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 122330718 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 122324066 cnot3b; CCR4-NOT transcription complex subunit 3b K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 122360361 cnot3a; CCR4-NOT transcription complex subunit 3a K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 122330884 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 122342878 cnot4b; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 122326715 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 122357838 cnot6b; CCR4-NOT transcription complex, subunit 6b K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 122345212 cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 122326915 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 122357947 cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 122362789 granule associated Rac and RHOG effector protein 1-like K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 122323023 dis3l2; DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 122328656 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 122329487 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 122327562 si:dkey-42i9.4; protein BTG1 K14443 TOB; protein Tob/BTG
E 122327975 btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 122328548 protein BTG1-like K14443 TOB; protein Tob/BTG
E 122330144 protein Tob2 K14443 TOB; protein Tob/BTG
E 122332646 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 122341526 tob1a; protein Tob1a K14443 TOB; protein Tob/BTG
E 122343528 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 122345348 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 122352516 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 122360186 si:dkey-79d12.5; maternal B9.15 protein K14443 TOB; protein Tob/BTG
E 122347562 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 122349124 patl1; LOW QUALITY PROTEIN: protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 122349710 LOW QUALITY PROTEIN: protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 122330957 edc3; enhancer of mRNA-decapping protein 3 isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 122323057 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 122346053 enhancer of mRNA-decapping protein 4-like K12616 EDC4; enhancer of mRNA-decapping protein 4
E 122328503 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 122333230 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 122357713 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 122351316 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 122360463 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 122357274 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 122356246 eif2ak2; interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 122324523 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 122352568 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 122329836 ythdf3; LOW QUALITY PROTEIN: YTH domain-containing family protein 3 K20102 YTHDF; YTH domain-containing family protein
E 122361749 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 122350172 ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 122356141 tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 122345338 tia1; nucleolysin TIA-1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 122345740 tia1l; cytotoxic granule-associated RNA binding protein 1, like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 122324211 pabpc1b; polyadenylate-binding protein 1b K13126 PABPC; polyadenylate-binding protein
E 122361689 pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 122350686 pabpc1l; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 122357970 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 122357982 LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 122329408 stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 122346444 stau1; LOW QUALITY PROTEIN: double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 122334057 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 122349077 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 122357877 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 122353707 elavl1b; ELAV-like protein 1b isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 122360921 elavl1a; ELAV-like protein 1a isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 122358047 g3bp1; ras GTPase-activating protein-binding protein 1 isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 122334615 g3bp2b; ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 122351692 g3bp2a; ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 122323184 eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 122341694 eif3ba; eukaryotic translation initiation factor 3, subunit Ba K03253 EIF3B; translation initiation factor 3 subunit B
E 122350276 eukaryotic translation initiation factor 3 subunit B isoform X1 K03253 EIF3B; translation initiation factor 3 subunit B
E 122348939 eif4a1a; eukaryotic translation initiation factor 4A1A K03257 EIF4A; translation initiation factor 4A
E 122356735 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 122345537 eif4a1b; eukaryotic translation initiation factor 4A1B K03257 EIF4A; translation initiation factor 4A
E 122354527 eif4a3; LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 122328980 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 122347272 eif4bb; eukaryotic translation initiation factor 4Bb isoform X1 K03258 EIF4B; translation initiation factor 4B
E 122324296 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X1 K03260 EIF4G; translation initiation factor 4G
E 122328729 eif4g3b; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 122332969 wu:fb16f03; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 122348000 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 122362891 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b K03260 EIF4G; translation initiation factor 4G
E 122353541 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 122329795 rps6ka3b; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 122361892 rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 122357074 rps6ka2; ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 122357385 rps6kal; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 122344743 rps6ka3a; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 122345427 ribosomal protein S6 kinase alpha-1-like K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 122332568 guanine nucleotide-binding protein subunit beta-2-like 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 122357790 rack1; guanine nucleotide-binding protein subunit beta-2-like 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 122345294 traf2b; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 122345455 TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 122345572 traf2a; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 122326501 nxf1b; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 122357369 nxf1a; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 122350987 hdac6; histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 122353846 tdrd3; tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
E 122328789 la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 122347379 larp4ab; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 122335509 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 122342656 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 122343372 mRNA-decapping enzyme 1B-like K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 122352777 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 122324173 probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 122362671 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 122360427 ddx61; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 122330957 edc3; enhancer of mRNA-decapping protein 3 isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 122323057 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 122346053 enhancer of mRNA-decapping protein 4-like K12616 EDC4; enhancer of mRNA-decapping protein 4
E 122349124 patl1; LOW QUALITY PROTEIN: protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 122349710 LOW QUALITY PROTEIN: protein PAT1 homolog 1-like K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 122350574 lsm1; U6 snRNA-associated Sm-like protein LSm1 isoform X1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 122346920 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 122328064 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 122354576 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 122355743 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 122330431 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 122330797 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 122327570 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 122343344 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 122358240 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 122324843 xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 122328442 zgc:103759; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 122331748 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 122333394 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 122345460 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 122343087 exosc2; exosome complex component RRP4 isoform X1 K03679 RRP4; exosome complex component RRP4
E 122357345 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 122328505 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 122362589 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 122348192 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 122323709 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 122352829 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 122348732 exosc9; exosome complex component RRP45 isoform X1 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 122351232 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 122349676 dis3l; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 122328370 exosc10; exosome component 10 isoform X1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 122356319 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 122330829 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 122324088 tent4a; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 122349411 tent4b; terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 122361022 terminal nucleotidyltransferase 4A-like K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 122348350 zcchc7; LOW QUALITY PROTEIN: zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 122353110 mtrex; LOW QUALITY PROTEIN: exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 122323911 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 122346109 ttc37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 122330993 wdr61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 122326715 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 122357838 cnot6b; CCR4-NOT transcription complex, subunit 6b K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 122345212 cnot6l; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 122330534 cnot1; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 122330718 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 122324066 cnot3b; CCR4-NOT transcription complex subunit 3b K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 122360361 cnot3a; CCR4-NOT transcription complex subunit 3a K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 122330884 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 122342878 cnot4b; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 122326915 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 122357947 cnot7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 122327617 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 122361006 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 122328656 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 122329487 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 122358623 parn; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 122362678 dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 122327562 si:dkey-42i9.4; protein BTG1 K14443 TOB; protein Tob/BTG
E 122327975 btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 122328548 protein BTG1-like K14443 TOB; protein Tob/BTG
E 122330144 protein Tob2 K14443 TOB; protein Tob/BTG
E 122332646 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 122341526 tob1a; protein Tob1a K14443 TOB; protein Tob/BTG
E 122343528 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 122345348 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 122352516 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 122360186 si:dkey-79d12.5; maternal B9.15 protein K14443 TOB; protein Tob/BTG
E 122357557 nocta; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 122352499 noctb; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 122326917 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 122360638 eri2; ERI1 exoribonuclease 2 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 122331748 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 122353853 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 122330708 ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 122333394 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 122326137 helz2b; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 122334315 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 122334316 helz2a; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 122348071 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 122348376 helz2c; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 122361731 nrde2; nuclear exosome regulator NRDE2 isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 122361414 samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 122332916 protein Smaug homolog 2 K27396 SMG; protein Smaug
E 122348772 focad; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 122323899 zc3h12ab; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 122348301 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 122345083 zc3h12b; probable ribonuclease ZC3H12B isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 122360611 endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 122355731 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 122331757 smfn; small fragment nuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
E 122357299 oligoribonuclease, mitochondrial-like K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 122323919 eno2; gamma-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 122328940 eno1a; enolase 1a, (alpha) isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 122334603 eno3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 122347192 eno1b; enolase 1b, (alpha) isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 122356447 polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 122326497 ATP-dependent 6-phosphofructokinase, platelet type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 122329322 pfkma; phosphofructokinase, muscle a isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 122329735 pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 122333104 pfkla; ATP-dependent 6-phosphofructokinase, liver type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 122347133 pfkmb; phosphofructokinase, muscle b isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 122362652 pfkpb; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 122354143 ATP-dependent 6-phosphofructokinase, liver type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 122357690 hspa9; stress-70 protein, mitochondrial isoform X1 K04043 dnaK; molecular chaperone DnaK
E 122351385 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 122343087 exosc2; exosome complex component RRP4 isoform X1 K03679 RRP4; exosome complex component RRP4
E 122345460 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 122328505 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 122323709 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024