+E Ribosome biogenesis KO
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Ribosome Biogenesis - Pelotomaculum thermopropionicum
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D PTH_1738 Rnc; dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C PTH_0895 Era; GTPase K03595 era; GTPase
C PTH_0833 Obg; predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C PTH_1266 NusA; transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
C PTH_1179 NusB; transcription termination factor K03625 nusB; transcription antitermination protein NusB
C PTH_0305 NusG; transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D PTH_1634 RsuA; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PTH_0080 KsgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PTH_1788 Sun; tRNA and rRNA cytosine-C5-methylases K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PTH_1754 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PTH_0881 Uncharacterized protein conserved in bacteria K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PTH_2915 GidB; predicted S-adenosylmethionine-dependent methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PTH_1869 predicted S-adenosylmethionine-dependent methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PTH_0066 predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PTH_1343 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D PTH_1197 predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D PTH_0299 SpoU; rRNA methylases K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PTH_2857 uncharacterized conserved protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PTH_1787 predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PTH_1197 predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D PTH_1518 TrmA; SAM-dependent methyltransferases K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D PTH_1818 RluA; pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C PTH_0743 RimI; acetyltransferases K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C PTH_1720 RimM; RimM protein, required for 16S rRNA processing K02860 rimM; 16S rRNA processing protein RimM
C PTH_1296 MiaB; 2-methylthioadenine synthetase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C PTH_2329 uncharacterized conserved protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C PTH_0880 PrmA; ribosomal protein L11 methylase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C PTH_1738 Rnc; dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
C PTH_0829 CafA; ribonucleases G and E K08301 rng; ribonuclease G [EC:3.1.26.-]
C PTH_1065 predicted endonuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C PTH_0296 Uncharacterized protein conserved in bacteria K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
B GTPases
C PTH_0895 Era; GTPase K03595 era; GTPase
C PTH_1780 predicted GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C PTH_1609 predicted GTPase K03977 engA; GTPase
C PTH_0833 Obg; predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
C PTH_1716 predicted GTPase K14540 rbgA; ribosome biogenesis GTPase A
C PTH_2120 HflX; GTPase K03665 hflX; GTPase
B Other maturation factors
C PTH_2828 SUA5; putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C PTH_1045 SpoT; guanosine polyphosphate pyrophosphohydrolases/synthetases K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C PTH_1270 RbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C PTH_1265 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C PTH_0837 Uncharacterized homolog of plant Iojap protein K09710 ybeB; ribosome-associated protein
C PTH_0892 predicted metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C PTH_2754 ribosome-associated protein Y K05808 hpf; ribosome hibernation promoting factor
C PTH_0927 predicted GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase
C PTH_1748 predicted metal-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024