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Transcription Machinery - Phaeodactylum tricornutum
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E PHATRDRAFT_15555 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E PHATRDRAFT_11441 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E PHATRDRAFT_13566 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E PHATRDRAFT_47430 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E PHATR_46699 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E PHATRDRAFT_35680 RNAP-II_3; hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E PHATRDRAFT_24922 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E PHATRDRAFT_25420 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PHATRDRAFT_10148 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E PHATRDRAFT_22597 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PHATRDRAFT_10821 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
E PHATR_10199 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E PHATRDRAFT_42944 hypothetical protein K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
E PHATRDRAFT_45009 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E PHATRDRAFT_45779 hypothetical protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E PHATRDRAFT_47054 hypothetical protein K03126 TAF12; transcription initiation factor TFIID subunit 12
D TFIIE
D TFIIF
E PHATRDRAFT_46429 hypothetical protein K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E PHATR_43960 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E PHATRDRAFT_54326 TFIIH-p44; suppressor of stem-loop protein 1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E PHATR_44108 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E PHATRDRAFT_20574 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E PHATRDRAFT_54072 ERCC2; xeroderma pigmentosum group D complementing protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E PHATR_36847 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E PHATRDRAFT_10160 CDKD1; hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E PHATRDRAFT_47392 MAT1; hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E PHATRDRAFT_48763 hypothetical protein K06634 CCNH; cyclin H
C Mediator complex
D Head
D Middle
E PHATRDRAFT_47149 hypothetical protein K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E PHATRDRAFT_38312 hypothetical protein K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
E PHATR_2957 hypothetical protein K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E PHATRDRAFT_42892 hypothetical protein K08874 TRRAP; transformation/transcription domain-associated protein
E PHATRDRAFT_1785 hypothetical protein K11314 TADA2A; transcriptional adapter 2-alpha
E PHATRDRAFT_45009 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E PHATRDRAFT_45779 hypothetical protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E PHATRDRAFT_47054 hypothetical protein K03126 TAF12; transcription initiation factor TFIID subunit 12
E PHATRDRAFT_47951 hypothetical protein K11364 SGF29; SAGA-associated factor 29
E PHATR_33504 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E PHATRDRAFT_44745 hypothetical protein K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E PHATRDRAFT_17408 hypothetical protein K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E PHATRDRAFT_54092 chromatin remodeling-related protein K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E PHATRDRAFT_45153 hypothetical protein K11652 ACTL6B; actin-like protein 6B
D SWI/SNF complex
E PHATRDRAFT_54139 hBRM; hypothetical protein K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
D RSC complex
E PHATRDRAFT_54139 hBRM; hypothetical protein K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
D Others
E PHATRDRAFT_37144 hypothetical protein K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
C Other transcription-related factors
D Transcription elongation factors
E PHATRDRAFT_36634 hypothetical protein K03145 TFIIS; transcription elongation factor S-II
E PHATRDRAFT_27082 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E PHATRDRAFT_47388 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
E PHATRDRAFT_47879 hypothetical protein K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E PHATRDRAFT_47180 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E PHATRDRAFT_42753 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E PHATRDRAFT_28482 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E PHATRDRAFT_50624 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E PHATRDRAFT_45542 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E PHATRDRAFT_50645 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E PHATRDRAFT_18899 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E PHATRDRAFT_11777 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E PHATRDRAFT_43779 hypothetical protein K06100 SYMPK; symplekin
E PHATRDRAFT_13834 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E PHATRDRAFT_15233 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E PHATR_43802 hypothetical protein K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
E PHATRDRAFT_28730 hypothetical protein K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
E PHATRDRAFT_27286 hypothetical protein K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E PHATRDRAFT_43639 hypothetical protein K15174 PAF1; RNA polymerase II-associated factor 1
E PHATRDRAFT_46600 hypothetical protein K15175 CDC73; parafibromin
E PHATRDRAFT_42758 hypothetical protein K15176 CTR9; RNA polymerase-associated protein CTR9
E PHATRDRAFT_44561 hypothetical protein K15177 LEO1; RNA polymerase-associated protein LEO1
E PHATRDRAFT_38931 hypothetical protein K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
E PHATRDRAFT_11009 hypothetical protein K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E PHATRDRAFT_42478 hypothetical protein K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E PHATRDRAFT_8658 hypothetical protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E PHATRDRAFT_45278 hypothetical protein K17498 SPN1; transcription factor SPN1
E PHATRDRAFT_12963 hypothetical protein K24104 GPN; GPN-loop GTPase
E PHATRDRAFT_20034 hypothetical protein K24104 GPN; GPN-loop GTPase
E PHATRDRAFT_31068 hypothetical protein K24104 GPN; GPN-loop GTPase
E PHATRDRAFT_13119 hypothetical protein K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E PHATRDRAFT_42100 RPC157; rna polymerase C 157 kDa K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E PHATRDRAFT_54289 RNAP-II_2; hypothetical protein K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E PHATR_52094 RNAP-II_1; hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E PHATRDRAFT_12779 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E PHATRDRAFT_47116 hypothetical protein K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E PHATR_54175 hypothetical protein K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E PHATRDRAFT_19835 hypothetical protein K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E PHATR_51630 RPC17; RNA polymerase C subunit 17 KDa K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E PHATR_13326 RPC11; RNA polymerase C subunit 11 kDa K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E PHATRDRAFT_25420 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PHATRDRAFT_10148 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E PHATRDRAFT_22597 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PHATRDRAFT_10821 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
D TFIIIB
E PHATR_10199 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E PHATRDRAFT_30925 hypothetical protein K15196 BRF1; transcription factor IIIB 90 kDa subunit
E PHATRDRAFT_42928 hypothetical protein K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E PHATRDRAFT_43092 hypothetical protein K15210 SNAPC3; snRNA-activating protein complex subunit 3
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E PHATRDRAFT_bd955 hypothetical protein K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E PHATRDRAFT_9235 hypothetical protein K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E PHATR_52094 RNAP-II_1; hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E PHATRDRAFT_12779 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E PHATR_46740 hypothetical protein K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
E PHATR_10310 hypothetical protein K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12
D Pol I, II, III common subunits
E PHATRDRAFT_25420 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PHATRDRAFT_10148 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E PHATRDRAFT_22597 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PHATRDRAFT_10821 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E PHATR_10199 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C Other transcription-related factors
D UBF
D Transcription initiation factors
E PHATRDRAFT_35171 hypothetical protein K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
E PHATRDRAFT_50221 hypothetical protein K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
E PHATRDRAFT_32255 hypothetical protein K15223 UAF30; upstream activation factor subunit UAF30
D Transcription elongation factors
E PHATRDRAFT_27082 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E PHATRDRAFT_47388 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E PHATRDRAFT_28551 NURF-140; imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024